RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 PATE1Q8WXA2 126 aa11.49□□□□□ -0.57
COL6A3-202ENST00000347401 ELOVL5Q9NYP7 299 aa11.49□□□□□ -0.57
COL6A3-202ENST00000347401 ZNF257Q9Y2Q1 563 aa11.49□□□□□ -0.57
COL6A3-202ENST00000347401 KBTBD11-OT1A0A1B0GTJ5 212 aa11.49□□□□□ -0.57
COL6A3-202ENST00000347401 RBMY1BA6NDE4 496 aaKnown RBP11.49□□□□□ -0.57
COL6A3-202ENST00000347401 RBMY1EA6NEQ0 496 aaKnown RBP11.49□□□□□ -0.57
COL6A3-202ENST00000347401 F12P00748 615 aaPredicted RBP11.49□□□□□ -0.57
COL6A3-202ENST00000347401 RBMY1DP0C7P1 496 aaKnown RBP11.49□□□□□ -0.57
COL6A3-202ENST00000347401 RBMY1A1P0DJD3 496 aaKnown RBP11.49□□□□□ -0.57
COL6A3-202ENST00000347401 RBMY1CP0DJD4 496 aa11.49□□□□□ -0.57
COL6A3-202ENST00000347401 FTH1P19P0C7X4 201 aa11.48□□□□□ -0.57
COL6A3-202ENST00000347401 KLK2P20151 261 aa11.48□□□□□ -0.57
COL6A3-202ENST00000347401 SNRPD3P62318 126 aaKnown RBP11.48□□□□□ -0.57
COL6A3-202ENST00000347401 SRSF4Q08170 494 aaKnown RBP11.48□□□□□ -0.57
COL6A3-202ENST00000347401 CENPWQ5EE01 88 aa11.48□□□□□ -0.57
COL6A3-202ENST00000347401 TBR1Q16650 682 aa11.48□□□□□ -0.57
COL6A3-202ENST00000347401 PLNP26678 52 aa11.48□□□□□ -0.57
COL6A3-202ENST00000347401 ZNF324BQ6AW86 544 aaPredicted RBP11.48□□□□□ -0.57
COL6A3-202ENST00000347401 G6PC2Q9NQR9 355 aa11.48□□□□□ -0.57
COL6A3-202ENST00000347401 H0YL77 283 aa11.48□□□□□ -0.57
COL6A3-202ENST00000347401 LIFP15018 202 aa11.48□□□□□ -0.57
COL6A3-202ENST00000347401 WIPI1Q5MNZ9 446 aaPredicted RBP11.48□□□□□ -0.57
COL6A3-202ENST00000347401 PHLDA1Q8WV24 401 aaPredicted RBP11.48□□□□□ -0.57
COL6A3-202ENST00000347401 GPR146Q96CH1 333 aa11.48□□□□□ -0.57
COL6A3-202ENST00000347401 CRISPLD2Q9H0B8 497 aa11.48□□□□□ -0.57
COL6A3-202ENST00000347401 C7orf71A4D174 169 aa11.48□□□□□ -0.57
COL6A3-202ENST00000347401 IFITM2Q01629 132 aa11.48□□□□□ -0.57
COL6A3-202ENST00000347401 OR1K1Q8NGR3 316 aa11.48□□□□□ -0.57
COL6A3-202ENST00000347401 FGFRL1Q8N441 504 aa11.48□□□□□ -0.57
COL6A3-202ENST00000347401 NXT2Q9NPJ8 142 aaKnown RBP11.48□□□□□ -0.57
COL6A3-202ENST00000347401 PGLYRP4Q96LB8 373 aa11.47□□□□□ -0.57
COL6A3-202ENST00000347401 CXCL16Q9H2A7 254 aa11.47□□□□□ -0.57
COL6A3-202ENST00000347401 TMEM196Q5HYL7 178 aa11.47□□□□□ -0.57
COL6A3-202ENST00000347401 VN1R4Q7Z5H5 301 aa11.47□□□□□ -0.57
COL6A3-202ENST00000347401 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.47□□□□□ -0.57
COL6A3-202ENST00000347401 TSPAN7P41732 249 aa11.47□□□□□ -0.57
COL6A3-202ENST00000347401 DLK2Q6UY11 383 aa11.47□□□□□ -0.57
COL6A3-202ENST00000347401 TRAV8-2A0A0B4J237 113 aa11.47□□□□□ -0.57
COL6A3-202ENST00000347401 WISP3O95389 354 aaPredicted RBP11.47□□□□□ -0.57
COL6A3-202ENST00000347401 CKS1BP61024 79 aa11.47□□□□□ -0.57
COL6A3-202ENST00000347401 MMDQ15546 238 aa11.47□□□□□ -0.57
COL6A3-202ENST00000347401 TMEM95Q3KNT9 176 aa11.47□□□□□ -0.57
COL6A3-202ENST00000347401 NRN1LQ496H8 165 aa11.47□□□□□ -0.57
COL6A3-202ENST00000347401 IGHV1OR21-1A0A087WYE8 117 aa11.47□□□□□ -0.57
COL6A3-202ENST00000347401 TSPAN2O60636 221 aa11.47□□□□□ -0.57
COL6A3-202ENST00000347401 CCL4L1Q8NHW4 92 aa11.47□□□□□ -0.57
COL6A3-202ENST00000347401 TRAV39A0A0B4J263 110 aa11.46□□□□□ -0.57
COL6A3-202ENST00000347401 PAX1P15863 534 aa11.46□□□□□ -0.57
COL6A3-202ENST00000347401 Q5PR19 223 aa11.46□□□□□ -0.57
COL6A3-202ENST00000347401 CBLN3Q6UW01 205 aa11.46□□□□□ -0.57
COL6A3-202ENST00000347401 KIF26AQ9ULI4 1882 aaPredicted RBP11.46□□□□□ -0.57
COL6A3-202ENST00000347401 TRAV9-2A0A087WT02 112 aa11.46□□□□□ -0.57
COL6A3-202ENST00000347401 PGPEP1LA6NFU8 196 aa11.46□□□□□ -0.57
COL6A3-202ENST00000347401 GCSAMLQ5JQS6 135 aa11.46□□□□□ -0.57
COL6A3-202ENST00000347401 ZNF576Q9H609 170 aa11.46□□□□□ -0.57
COL6A3-202ENST00000347401 JPT1Q9UK76 154 aa11.46□□□□□ -0.57
COL6A3-202ENST00000347401 CYSLTR1Q9Y271 337 aa11.46□□□□□ -0.57
COL6A3-202ENST00000347401 CCL7P80098 99 aa11.46□□□□□ -0.57
COL6A3-202ENST00000347401 LPAL2Q16609 132 aa11.46□□□□□ -0.57
COL6A3-202ENST00000347401 SELENOHQ8IZQ5 122 aaKnown RBP11.46□□□□□ -0.57
COL6A3-202ENST00000347401 RNASEH2CQ8TDP1 164 aaKnown RBP11.46□□□□□ -0.57
COL6A3-202ENST00000347401 ORAOV1Q8WV07 137 aa11.46□□□□□ -0.57
COL6A3-202ENST00000347401 A0A1B0GW64 132 aa11.46□□□□□ -0.57
COL6A3-202ENST00000347401 FAM90A9PA6NNJ1 464 aa11.46□□□□□ -0.57
COL6A3-202ENST00000347401 MALRD1Q5VYJ5 2156 aa11.46□□□□□ -0.57
COL6A3-202ENST00000347401 TMEM170AQ8WVE7 144 aa11.46□□□□□ -0.57
COL6A3-202ENST00000347401 Q96M66 194 aa11.46□□□□□ -0.57
COL6A3-202ENST00000347401 BEX4Q9NWD9 120 aaPredicted RBP11.46□□□□□ -0.57
COL6A3-202ENST00000347401 IGHV3-64DA0A0J9YX35 117 aa11.46□□□□□ -0.58
COL6A3-202ENST00000347401 IZUMO1RA6ND01 250 aa11.46□□□□□ -0.58
COL6A3-202ENST00000347401 TM4SF5O14894 197 aa11.46□□□□□ -0.58
COL6A3-202ENST00000347401 NANOS3P60323 173 aaKnown RBP11.46□□□□□ -0.58
COL6A3-202ENST00000347401 FBLN7Q53RD9 439 aa11.46□□□□□ -0.58
COL6A3-202ENST00000347401 PRSS27Q9BQR3 290 aa11.46□□□□□ -0.58
COL6A3-202ENST00000347401 MBD1Q9UIS9 605 aaPredicted RBP11.46□□□□□ -0.58
COL6A3-202ENST00000347401 F11RQ9Y624 299 aaKnown RBP11.46□□□□□ -0.58
COL6A3-202ENST00000347401 IGHV3-43A0A0B4J1X8 118 aa11.46□□□□□ -0.58
COL6A3-202ENST00000347401 IGHV3-43DP0DP04 118 aa11.46□□□□□ -0.58
COL6A3-202ENST00000347401 WNT5AP41221 380 aa11.46□□□□□ -0.58
COL6A3-202ENST00000347401 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.45□□□□□ -0.58
COL6A3-202ENST00000347401 MDP1Q86V88 176 aa11.45□□□□□ -0.58
COL6A3-202ENST00000347401 DDB2Q92466 427 aa11.45□□□□□ -0.58
COL6A3-202ENST00000347401 TMEM106BQ9NUM4 274 aa11.45□□□□□ -0.58
COL6A3-202ENST00000347401 IGHV5-51A0A0C4DH38 117 aa11.45□□□□□ -0.58
COL6A3-202ENST00000347401 GPR183P32249 361 aa11.45□□□□□ -0.58
COL6A3-202ENST00000347401 CX3CL1P78423 397 aa11.45□□□□□ -0.58
COL6A3-202ENST00000347401 FNDC1Q4ZHG4 1894 aaPredicted RBP11.45□□□□□ -0.58
COL6A3-202ENST00000347401 APOMO95445 188 aa11.45□□□□□ -0.58
COL6A3-202ENST00000347401 SFTPCP11686 197 aa11.45□□□□□ -0.58
COL6A3-202ENST00000347401 LURAP1LQ8IV03 231 aa11.45□□□□□ -0.58
COL6A3-202ENST00000347401 RCC1LQ96I51 464 aaKnown RBP11.45□□□□□ -0.58
COL6A3-202ENST00000347401 MPV17P39210 176 aa11.45□□□□□ -0.58
COL6A3-202ENST00000347401 HDHD3Q9BSH5 251 aaPredicted RBP11.45□□□□□ -0.58
COL6A3-202ENST00000347401 GP6Q9HCN6 339 aa11.45□□□□□ -0.58
COL6A3-202ENST00000347401 TMEM186Q96B77 213 aa11.45□□□□□ -0.58
COL6A3-202ENST00000347401 ZNF488Q96MN9 340 aa11.45□□□□□ -0.58
COL6A3-202ENST00000347401 LINC00587B1AMM8 73 aa11.44□□□□□ -0.58
COL6A3-202ENST00000347401 PGLYRP1O75594 196 aaPredicted RBP11.44□□□□□ -0.58
COL6A3-202ENST00000347401 ERVK11-1P61568 191 aa11.44□□□□□ -0.58
COL6A3-202ENST00000347401 HSD52Q0P140 79 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms