RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 NRN1Q9NPD7 142 aa5.35□□□□□ -1.55
CSMD1-201ENST00000335551 SLC25A15Q9Y619 301 aa5.35□□□□□ -1.55
CSMD1-201ENST00000335551 CACNA1AO00555 2505 aa5.35□□□□□ -1.55
CSMD1-201ENST00000335551 HLA-DQB1P01920 261 aa5.35□□□□□ -1.55
CSMD1-201ENST00000335551 GPX1P07203 203 aa5.35□□□□□ -1.55
CSMD1-201ENST00000335551 DDB2Q92466 427 aa5.35□□□□□ -1.55
CSMD1-201ENST00000335551 RPP21Q9H633 154 aaKnown RBP5.35□□□□□ -1.55
CSMD1-201ENST00000335551 HCFC2Q9Y5Z7 792 aa5.35□□□□□ -1.55
CSMD1-201ENST00000335551 NHSL1Q5SYE7 1610 aa5.35□□□□□ -1.55
CSMD1-201ENST00000335551 RTN4RQ9BZR6 473 aa5.35□□□□□ -1.55
CSMD1-201ENST00000335551 HOXA3O43365 443 aaPredicted RBP5.35□□□□□ -1.55
CSMD1-201ENST00000335551 APOHP02749 345 aaPredicted RBP5.35□□□□□ -1.55
CSMD1-201ENST00000335551 KLKB1P03952 638 aa5.35□□□□□ -1.55
CSMD1-201ENST00000335551 C8orf88P0DMB2 117 aa5.35□□□□□ -1.55
CSMD1-201ENST00000335551 AQP3Q92482 292 aa5.35□□□□□ -1.55
CSMD1-201ENST00000335551 NHP2Q9NX24 153 aaKnown RBP5.35□□□□□ -1.55
CSMD1-201ENST00000335551 IL36BQ9NZH7 164 aa5.35□□□□□ -1.55
CSMD1-201ENST00000335551 BRCA1P38398 1863 aaKnown RBP5.35□□□□□ -1.55
CSMD1-201ENST00000335551 TNFSF14O43557 240 aa5.35□□□□□ -1.55
CSMD1-201ENST00000335551 MIC13Q5XKP0 118 aa5.35□□□□□ -1.55
CSMD1-201ENST00000335551 KCNE1BA0A087WTH5 132 aa5.35□□□□□ -1.55
CSMD1-201ENST00000335551 RPL34P49207 117 aaKnown RBP5.35□□□□□ -1.55
CSMD1-201ENST00000335551 TMEM30BQ3MIR4 351 aa5.35□□□□□ -1.55
CSMD1-201ENST00000335551 ST6GALNAC6Q969X2 333 aa5.35□□□□□ -1.55
CSMD1-201ENST00000335551 RSPO3Q9BXY4 272 aaPredicted RBP5.35□□□□□ -1.55
CSMD1-201ENST00000335551 HEXA-AS1Q9H8Q6 139 aa5.35□□□□□ -1.55
CSMD1-201ENST00000335551 MARF1Q9Y4F3 1742 aaKnown RBP5.34□□□□□ -1.55
CSMD1-201ENST00000335551 SNRPD3P62318 126 aaKnown RBP5.34□□□□□ -1.55
CSMD1-201ENST00000335551 FAM74A4Q5TZK3 123 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 TMEM252Q8N6L7 170 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 KLHDC9Q8NEP7 349 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 TMEM106BQ9NUM4 274 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 SERGEFQ9UGK8 458 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 PLXNA3P51805 1871 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 VWA8A3KMH1 1905 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 TRAV5A0A0B4J249 113 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 TRAV12-3A0A0B4J271 114 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 IGHV3-13P01766 116 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 IGHV3-7P01780 117 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 MARS2Q96GW9 593 aaKnown RBP5.34□□□□□ -1.55
CSMD1-201ENST00000335551 LY75O60449 1722 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 IZUMO1RA6ND01 250 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 CADM4Q8NFZ8 388 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 SH3BGRL3Q9H299 93 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 PPP1R3EQ9H7J1 279 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 MARCH11A6NNE9 402 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 HYAL3O43820 417 aaPredicted RBP5.34□□□□□ -1.55
CSMD1-201ENST00000335551 VSIG8P0DPA2 414 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 ZNF479Q96JC4 524 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 FAM90A10PA6NDY2 464 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 FAM90A18PA6NE21 464 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 FAM90A16PA6NEW6 464 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 FAM90A20PA6NIJ5 464 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 FAM90A8PA6NJQ4 464 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 FAM90A7PA6NKC0 464 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 FAM90A22PA8MWA6 464 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 FAM90A12PA8MX19 464 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 FAM90A5PA8MXJ8 464 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 FAM90A23PA8MXZ1 464 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 NDUFA3O95167 84 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 FAM90A15PP0C7V4 464 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 FAM90A13PP0C7W8 464 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 FAM90A14PP0C7W9 464 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 FAM90A24PP0C7X0 464 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 KIAA1644Q3SXP7 199 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 GFRALQ6UXV0 394 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 CYP2G1PQ6ZSU1 146 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 ELSPBP1Q96BH3 223 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 C2CD3Q4AC94 2353 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 CRPP02741 224 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 LEPP41159 167 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 P2RY6Q15077 328 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 SPEM1Q8N4L4 309 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 TNFRSF19Q9NS68 423 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 TRAV2A0A0B4J234 112 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 PSMB11A5LHX3 300 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 COX6B1P14854 86 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 GCHFRP30047 84 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 EDA2RQ9HAV5 297 aa5.34□□□□□ -1.55
CSMD1-201ENST00000335551 LIPT2A6NK58 231 aa5.34□□□□□ -1.56
CSMD1-201ENST00000335551 LMO7DNF2Z398 122 aa5.34□□□□□ -1.56
CSMD1-201ENST00000335551 DPM2O94777 84 aa5.34□□□□□ -1.56
CSMD1-201ENST00000335551 CIARTQ8N365 385 aaPredicted RBP5.34□□□□□ -1.56
CSMD1-201ENST00000335551 SLC25A10Q9UBX3 287 aaPredicted RBP5.34□□□□□ -1.56
CSMD1-201ENST00000335551 CEACAM4O75871 244 aa5.34□□□□□ -1.56
CSMD1-201ENST00000335551 IGLV3-27P01718 113 aa5.34□□□□□ -1.56
CSMD1-201ENST00000335551 NUTF2P61970 127 aaKnown RBP5.34□□□□□ -1.56
CSMD1-201ENST00000335551 RCC1LQ96I51 464 aaKnown RBP5.34□□□□□ -1.56
CSMD1-201ENST00000335551 CHODLQ9H9P2 273 aa5.34□□□□□ -1.56
CSMD1-201ENST00000335551 CT83Q5H943 113 aa5.33□□□□□ -1.56
CSMD1-201ENST00000335551 HILPDAQ9Y5L2 63 aa5.33□□□□□ -1.56
CSMD1-201ENST00000335551 A0A1B0GTL3 188 aa5.33□□□□□ -1.56
CSMD1-201ENST00000335551 TMEM238C9JI98 176 aa5.33□□□□□ -1.56
CSMD1-201ENST00000335551 OR52E5Q8NH55 327 aa5.33□□□□□ -1.56
CSMD1-201ENST00000335551 ZNF576Q9H609 170 aa5.33□□□□□ -1.56
CSMD1-201ENST00000335551 PEX7O00628 323 aa5.33□□□□□ -1.56
CSMD1-201ENST00000335551 TPTE2P1Q5T6R2 138 aa5.33□□□□□ -1.56
CSMD1-201ENST00000335551 NPCDR1Q9BY65 106 aa5.33□□□□□ -1.56
CSMD1-201ENST00000335551 DENND4CQ5VZ89 1909 aa5.33□□□□□ -1.56
CSMD1-201ENST00000335551 LDLRAD4O15165 306 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms