RNA–Protein interactions for RNA: ENST00000315544.6

CNOT4-201, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 3,783 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-201ENST00000315544 GAFA1Q96PS6 74 aa6.32□□□□□ -1.4
CNOT4-201ENST00000315544 NIPSNAP3BQ9BS92 247 aa6.32□□□□□ -1.4
CNOT4-201ENST00000315544 QTRT1Q9BXR0 403 aaKnown RBP6.32□□□□□ -1.4
CNOT4-201ENST00000315544 MRPL36Q9P0J6 103 aaKnown RBP6.32□□□□□ -1.4
CNOT4-201ENST00000315544 REC114Q7Z4M0 266 aa6.32□□□□□ -1.4
CNOT4-201ENST00000315544 ZNF610Q8N9Z0 462 aa6.32□□□□□ -1.4
CNOT4-201ENST00000315544 C20orf24Q9BUV8 137 aa6.32□□□□□ -1.4
CNOT4-201ENST00000315544 IDI2-AS1Q9NZ38 188 aa6.32□□□□□ -1.4
CNOT4-201ENST00000315544 TRBV6-1A0A0K0K1D8 114 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 C19orf71A6NCJ1 209 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 C22orf46C9J442 243 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 FOXH1O75593 365 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 NDUFB8O95169 186 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 GCGP01275 180 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 OR5G3P0C626 314 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 S100PP25815 95 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 CYB561P49447 251 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 TGFBR3Q03167 851 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 EIF5AL1Q6IS14 154 aaKnown RBP6.31□□□□□ -1.4
CNOT4-201ENST00000315544 SLC25A48Q6ZT89 311 aaKnown RBP6.31□□□□□ -1.4
CNOT4-201ENST00000315544 NIT1Q86X76 327 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 HSD17B11Q8NBQ5 300 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 MISP3Q96FF7 219 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 SLC25A2Q9BXI2 301 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 OR2J1Q9GZK6 312 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 HEYLQ9NQ87 328 aaPredicted RBP6.31□□□□□ -1.4
CNOT4-201ENST00000315544 INTS1Q8N201 2190 aaKnown RBP6.31□□□□□ -1.4
CNOT4-201ENST00000315544 TRAV9-1A0A075B6T8 112 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 A0A1B0GUS0 222 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 C15orf61A6NNL5 157 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 IGHG4P01861 327 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 HBZP02008 142 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 SRP14P37108 136 aaKnown RBP6.31□□□□□ -1.4
CNOT4-201ENST00000315544 FOXE3Q13461 319 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 CDSNQ15517 529 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 C3AR1Q16581 482 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 ZNF672Q499Z4 452 aaPredicted RBP6.31□□□□□ -1.4
CNOT4-201ENST00000315544 ACY3Q96HD9 319 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 NPFFR1Q9GZQ6 430 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 OR2S2Q9NQN1 319 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 FUT9Q9Y231 359 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 OR5H1A6NKK0 313 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 GGTLC3B5MD39 225 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 CECR9P0C854 216 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 RPL35P42766 123 aaKnown RBP6.31□□□□□ -1.4
CNOT4-201ENST00000315544 FOXA3P55318 350 aaPredicted RBP6.31□□□□□ -1.4
CNOT4-201ENST00000315544 ARFRP1Q13795 201 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 PRR30Q53SZ7 412 aaPredicted RBP6.31□□□□□ -1.4
CNOT4-201ENST00000315544 TMEM37Q8WXS4 190 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 NDUFA4L2Q9NRX3 87 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 ZNF257Q9Y2Q1 563 aa6.31□□□□□ -1.4
CNOT4-201ENST00000315544 PTPRZ1P23471 2315 aaPredicted RBP6.3□□□□□ -1.4
CNOT4-201ENST00000315544 MAP1BP46821 2468 aaKnown RBP6.3□□□□□ -1.4
CNOT4-201ENST00000315544 AGPAT2O15120 278 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 TSPAN15O95858 294 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 HAND1O96004 215 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 TK1P04183 234 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 OR4A8P0C604 315 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 SSTR5P35346 364 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 PLP1P60201 277 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 KLF5Q13887 457 aaPredicted RBP6.3□□□□□ -1.4
CNOT4-201ENST00000315544 DEFB109BQ30KR1 87 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 C16orf82Q7Z2V1 217 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 OR52L2PQ8NGH6 319 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 VKORC1Q9BQB6 163 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 OPN3Q9H1Y3 402 aaPredicted RBP6.3□□□□□ -1.4
CNOT4-201ENST00000315544 SEPSECSQ9HD40 501 aaKnown RBP6.3□□□□□ -1.4
CNOT4-201ENST00000315544 ABCA2Q9BZC7 2435 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 CTXND1A0A1B0GTU2 59 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 SMCO3A2RU48 225 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 J3QKU1 62 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 OPN1MWP04001 364 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 CT45A6P0DMU7 189 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 CT45A5P0DMU8 189 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 CT45A7P0DMV0 189 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 OPN1MW2P0DN77 364 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 OPN1MW3P0DN78 364 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 S100A10P60903 97 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 ATP6V1FQ16864 119 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 C1orf194Q5T5A4 169 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 TCF24Q7RTU0 167 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 PIGCQ92535 297 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 C20orf144Q9BQM9 153 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 SNHG12Q9BXW3 62 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 TREM1Q9NP99 234 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 GSKIPQ9P0R6 139 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 NAT8Q9UHE5 227 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 A0A096LNT2 108 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 A0A096LPE4 126 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 TRAV39A0A0B4J263 110 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 TRAV17A0A0B4J275 112 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 A0A1W2PPZ6 126 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 RPL29P47914 159 aaKnown RBP6.3□□□□□ -1.4
CNOT4-201ENST00000315544 MEOX1P50221 254 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 ARG2P78540 354 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 C19orf54Q5BKX5 351 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 ADAM5Q6NVV9 412 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 ZNF788Q6ZQV5 615 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 TMEM136Q6ZRR5 245 aa6.3□□□□□ -1.4
CNOT4-201ENST00000315544 LRP11Q86VZ4 500 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms