RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 ZNF146Q15072 292 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 ECSCRQ19T08 205 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 TMEM86BQ8N661 226 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 FLYWCH2Q96CP2 140 aaKnown RBP4.53□□□□□ -1.68
SCN1A-201ENST00000303395 PARLQ9H300 379 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 C5AR2Q9P296 337 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 JPT1Q9UK76 154 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 LOC101059915A0A1B0GWI6 518 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-201ENST00000303395 PSMB11A5LHX3 300 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 K7N7A8 449 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 ZNF56Q15929 161 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 LINC01590Q5TEZ4 76 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 ZNF385CQ66K41 422 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-201ENST00000303395 ZNF793Q6ZN11 406 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 ZNRF1Q8ND25 227 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 SLC25A40Q8TBP6 338 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 DUX5Q96PT3 197 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 FOXB1Q99853 325 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 MESP1Q9BRJ9 268 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 MAP1LC3AQ9H492 121 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 SIVA1O15304 175 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 CKS2P33552 79 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 BTCP35070 178 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 P2RY4P51582 365 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 PMP22Q01453 160 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 RBMY1FQ15415 496 aaKnown RBP4.53□□□□□ -1.68
SCN1A-201ENST00000303395 TNXAQ16473 311 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 TMEM215Q68D42 235 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 RDH5Q92781 318 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 MGST2Q99735 147 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 ABHD14AQ9BUJ0 271 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 WNT5BQ9H1J7 359 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 ZNF257Q9Y2Q1 563 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 TET2Q6N021 2002 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-201ENST00000303395 FNDC1Q4ZHG4 1894 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-201ENST00000303395 GGTLC3B5MD39 225 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 C21orf140B9A014 251 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 TM4SF5O14894 197 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 TDGF1P3P51864 188 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 ZNF415Q09FC8 603 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 TAL2Q16559 108 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 SLC25A48Q6ZT89 311 aaKnown RBP4.53□□□□□ -1.68
SCN1A-201ENST00000303395 MS4A4AQ96JQ5 239 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 IL36BQ9NZH7 164 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 CACNA1HO95180 2353 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 LOC102723996A0A087X1L8 192 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 SNURFLB1AK76 121 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 LHBP01229 141 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 SMIM10L1P0DMW3 83 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 LPAR6P43657 344 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 HBBP68871 147 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 POU2AF1Q16633 256 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 DCAF10Q5QP82 559 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 OR10S1Q8NGN2 331 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 SMIM10Q96HG1 83 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 ZNF703Q9H7S9 590 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-201ENST00000303395 PTPRFP10586 1907 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 HCRTO43612 131 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 ZNF708P17019 499 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 TMEM50BP56557 158 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 MGAT2Q10469 447 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 TMEM187Q14656 261 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 CEACAM21Q3KPI0 293 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 NUDT8Q8WV74 236 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 MALRD1Q5VYJ5 2156 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 LEPROTL1O95214 131 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 EML2O95834 649 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 FHL5Q5TD97 284 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 GTSCR1Q86UQ5 136 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 CLDND2Q8NHS1 167 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 OSR1Q8TAX0 266 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-201ENST00000303395 SP7Q8TDD2 431 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-201ENST00000303395 FMC1Q96HJ9 113 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 FOXJ2Q9P0K8 574 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 INSIG2Q9Y5U4 225 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 DLEU1O43261 78 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 SRSF6Q13247 344 aaKnown RBP4.52□□□□□ -1.69
SCN1A-201ENST00000303395 FAM78BQ5VT40 261 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 OR11H4Q8NGC9 324 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 ZMAT3Q9HA38 289 aaKnown RBP4.52□□□□□ -1.69
SCN1A-201ENST00000303395 SEPSECSQ9HD40 501 aaKnown RBP4.52□□□□□ -1.69
SCN1A-201ENST00000303395 A0A1B0GTL3 188 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 LDLRAD4O15165 306 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 B3GALT4O96024 378 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 TMEM258P61165 79 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 RPL8P62917 257 aaKnown RBP4.52□□□□□ -1.69
SCN1A-201ENST00000303395 PSG6Q00889 435 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 ZNF750Q32MQ0 723 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 OR5P3Q8WZ94 311 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 RNF5Q99942 180 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 MS4A5Q9H3V2 200 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 FSCN3Q9NQT6 498 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 CYSLTR1Q9Y271 337 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 MGST3O14880 152 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 LILRA1O75019 489 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 CA1P00915 261 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-201ENST00000303395 CISD3P0C7P0 127 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 CTLA4P16410 223 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 FCGR2BP31994 310 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-201ENST00000303395 ID3Q02535 119 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms