RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 TMEM170AQ8WVE7 144 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 NAT6Q93015 286 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 C18orf12Q96KH6 178 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 SPSB2Q99619 263 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 IGHV3-21A0A0B4J1V1 117 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 A0A0J9YW62 118 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 CLPSL1A2RUU4 121 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 FAM90A9PA6NNJ1 464 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 ATXN7O15265 892 aaPredicted RBP5.51□□□□□ -1.53
VPS35-201ENST00000299138 SUPT4H1P63272 117 aaKnown RBP5.51□□□□□ -1.53
VPS35-201ENST00000299138 POU2AF1Q16633 256 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 SLC25A40Q8TBP6 338 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 TMEM186Q96B77 213 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 ZNF414Q96IQ9 312 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 EPDR1Q9UM22 224 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 KBTBD11-OT1A0A1B0GTJ5 212 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 RBMY1BA6NDE4 496 aaKnown RBP5.5□□□□□ -1.53
VPS35-201ENST00000299138 RBMY1EA6NEQ0 496 aaKnown RBP5.5□□□□□ -1.53
VPS35-201ENST00000299138 PRR32B1ATL7 298 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 RBMY1DP0C7P1 496 aaKnown RBP5.5□□□□□ -1.53
VPS35-201ENST00000299138 RBMY1A1P0DJD3 496 aaKnown RBP5.5□□□□□ -1.53
VPS35-201ENST00000299138 RBMY1CP0DJD4 496 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 GPR183P32249 361 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 GVQW1Q8N7I0 195 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 ADAD2Q8NCV1 583 aaKnown RBP5.5□□□□□ -1.53
VPS35-201ENST00000299138 ZNF721Q8TF20 911 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 SDF2L1Q9HCN8 221 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 IGKV3D-20A0A0C4DH25 116 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 M0R1B8 84 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 PCM1Q15154 2024 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 DEFB133Q30KQ1 61 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 OR8B12Q8NGG6 310 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 HSPB7Q9UBY9 170 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 SERGEFQ9UGK8 458 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 INSIG2Q9Y5U4 225 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 NUP214P35658 2090 aaPredicted RBP5.5□□□□□ -1.53
VPS35-201ENST00000299138 FRMPD3Q5JV73 1810 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 PGPEP1LA6NFU8 196 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 MSGN1A6NI15 193 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 ATP5LO75964 103 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 S1PR2O95136 353 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 HSPE1P61604 102 aaKnown RBP5.5□□□□□ -1.53
VPS35-201ENST00000299138 SPATA46Q5T0L3 261 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 ORAOV1Q8WV07 137 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 RNF138Q8WVD3 245 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 AMELYQ99218 206 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 C19orf24Q9BVV8 132 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 SLC25A15Q9Y619 301 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 GREB1Q4ZG55 1949 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 TRGV10A0A0A0MS01 117 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 LMO7DNF2Z398 122 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 HOXA3O43365 443 aaPredicted RBP5.5□□□□□ -1.53
VPS35-201ENST00000299138 CD46P15529 392 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 LMO1P25800 156 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 GLRXP35754 106 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 TMEM196Q5HYL7 178 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 OR10J3Q5JRS4 329 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 TIMM23BQ5SRD1 257 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 Q8NFD4 153 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 RFESDQ8TAC1 157 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 C20orf144Q9BQM9 153 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 IGHV3OR16-12A0A075B7B8 117 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 IGHV3-15A0A0B4J1V0 119 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 A0A1W2PRS3 328 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 MPZL1O95297 269 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 TMEM50BP56557 158 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 RPS20P60866 119 aaKnown RBP5.5□□□□□ -1.53
VPS35-201ENST00000299138 TNXAQ16473 311 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 FAM71F2Q6NXP2 309 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 DUSP23Q9BVJ7 150 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 SLC25A2Q9BXI2 301 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 FOXD3Q9UJU5 478 aaPredicted RBP5.5□□□□□ -1.53
VPS35-201ENST00000299138 IGLV3-12A0A075B6K2 115 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 A8MWL6 223 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 HIST1H2BKO60814 126 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 HIST1H2BJP06899 126 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 HIST1H2BOP23527 126 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 HIST1H2BBP33778 126 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 HIST1H2BDP58876 126 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 HIST1H2BCP62807 126 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 PRB3Q04118 309 aaPredicted RBP5.5□□□□□ -1.53
VPS35-201ENST00000299138 HIST2H2BEQ16778 126 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.5□□□□□ -1.53
VPS35-201ENST00000299138 SAMD5Q5TGI4 173 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 C1QL3Q5VWW1 255 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 TMEM52Q8NDY8 209 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 CLDND2Q8NHS1 167 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 SSC4DQ8WTU2 575 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 HIST1H2BHQ93079 126 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 C1orf147Q96MC9 270 aaPredicted RBP5.5□□□□□ -1.53
VPS35-201ENST00000299138 HIST1H2BNQ99877 126 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 HIST1H2BMQ99879 126 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 TMEM106BQ9NUM4 274 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 RABAC1Q9UI14 185 aa5.5□□□□□ -1.53
VPS35-201ENST00000299138 TRAV41A0A0B4J266 112 aa5.49□□□□□ -1.53
VPS35-201ENST00000299138 FOXI3A8MTJ6 420 aaPredicted RBP5.49□□□□□ -1.53
VPS35-201ENST00000299138 NTN1O95631 604 aa5.49□□□□□ -1.53
VPS35-201ENST00000299138 TRACP01848 142 aa5.49□□□□□ -1.53
VPS35-201ENST00000299138 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.49□□□□□ -1.53
VPS35-201ENST00000299138 NXT2Q9NPJ8 142 aaKnown RBP5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms