RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 TIMD4Q96H15 378 aa11.68□□□□□ -0.54
C9orf3-202ENST00000297979 UBTD1Q9HAC8 227 aa11.68□□□□□ -0.54
C9orf3-202ENST00000297979 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.68□□□□□ -0.54
C9orf3-202ENST00000297979 RALYQ9UKM9 306 aaKnown RBP11.68□□□□□ -0.54
C9orf3-202ENST00000297979 ZNF841Q6ZN19 808 aa11.68□□□□□ -0.54
C9orf3-202ENST00000297979 LINC00052Q96N35 136 aa11.68□□□□□ -0.54
C9orf3-202ENST00000297979 SPTBN1Q01082 2364 aaKnown RBP11.68□□□□□ -0.54
C9orf3-202ENST00000297979 A0A1W2PRV1 198 aa11.68□□□□□ -0.54
C9orf3-202ENST00000297979 IAPPP10997 89 aa11.68□□□□□ -0.54
C9orf3-202ENST00000297979 RNF141Q8WVD5 230 aa11.68□□□□□ -0.54
C9orf3-202ENST00000297979 RAB1CQ92928 201 aa11.68□□□□□ -0.54
C9orf3-202ENST00000297979 ARV1Q9H2C2 271 aa11.68□□□□□ -0.54
C9orf3-202ENST00000297979 HSPB7Q9UBY9 170 aa11.68□□□□□ -0.54
C9orf3-202ENST00000297979 DNASE2O00115 360 aaPredicted RBP11.67□□□□□ -0.54
C9orf3-202ENST00000297979 ZNF25P17030 456 aaPredicted RBP11.67□□□□□ -0.54
C9orf3-202ENST00000297979 UBE2KP61086 200 aa11.67□□□□□ -0.54
C9orf3-202ENST00000297979 ERVK-16P61578 105 aa11.67□□□□□ -0.54
C9orf3-202ENST00000297979 CHODLQ9H9P2 273 aa11.67□□□□□ -0.54
C9orf3-202ENST00000297979 ZNRD1Q9P1U0 126 aa11.67□□□□□ -0.54
C9orf3-202ENST00000297979 A6NNC1 897 aa11.67□□□□□ -0.54
C9orf3-202ENST00000297979 H3BP45 60 aa11.67□□□□□ -0.54
C9orf3-202ENST00000297979 PPIHO43447 177 aaKnown RBP11.67□□□□□ -0.54
C9orf3-202ENST00000297979 CST7O76096 145 aa11.67□□□□□ -0.54
C9orf3-202ENST00000297979 TAS2R30P59541 319 aa11.67□□□□□ -0.54
C9orf3-202ENST00000297979 ZNF383Q8NA42 475 aa11.67□□□□□ -0.54
C9orf3-202ENST00000297979 OR8B3Q8NGG8 313 aa11.67□□□□□ -0.54
C9orf3-202ENST00000297979 SMIM8Q96KF7 97 aa11.67□□□□□ -0.54
C9orf3-202ENST00000297979 OR8B2Q96RD0 313 aa11.67□□□□□ -0.54
C9orf3-202ENST00000297979 PSENENQ9NZ42 101 aa11.67□□□□□ -0.54
C9orf3-202ENST00000297979 A0A1W2PPQ1 181 aa11.66□□□□□ -0.54
C9orf3-202ENST00000297979 FGF16O43320 207 aa11.66□□□□□ -0.54
C9orf3-202ENST00000297979 NPSP0C0P6 89 aa11.66□□□□□ -0.54
C9orf3-202ENST00000297979 ZNF266Q14584 549 aa11.66□□□□□ -0.54
C9orf3-202ENST00000297979 CLINT1Q14677 625 aa11.66□□□□□ -0.54
C9orf3-202ENST00000297979 PRSS57Q6UWY2 283 aa11.66□□□□□ -0.54
C9orf3-202ENST00000297979 SPNS3Q6ZMD2 512 aa11.66□□□□□ -0.54
C9orf3-202ENST00000297979 C8orf31Q8N9H6 132 aa11.66□□□□□ -0.54
C9orf3-202ENST00000297979 RBKSQ9H477 322 aa11.66□□□□□ -0.54
C9orf3-202ENST00000297979 BARX1Q9HBU1 254 aaPredicted RBP11.66□□□□□ -0.54
C9orf3-202ENST00000297979 TMEM140Q9NV12 185 aa11.66□□□□□ -0.54
C9orf3-202ENST00000297979 FAM90A9PA6NNJ1 464 aa11.66□□□□□ -0.54
C9orf3-202ENST00000297979 FBXO24O75426 580 aa11.66□□□□□ -0.54
C9orf3-202ENST00000297979 RBMXL2O75526 392 aaKnown RBP11.66□□□□□ -0.54
C9orf3-202ENST00000297979 NQO2P16083 231 aa11.66□□□□□ -0.54
C9orf3-202ENST00000297979 ZNF833PQ6ZTB9 187 aa11.66□□□□□ -0.54
C9orf3-202ENST00000297979 OR5C1Q8NGR4 320 aa11.66□□□□□ -0.54
C9orf3-202ENST00000297979 NEIL1Q96FI4 390 aaPredicted RBP11.66□□□□□ -0.54
C9orf3-202ENST00000297979 GINS3Q9BRX5 216 aa11.66□□□□□ -0.54
C9orf3-202ENST00000297979 IGHV1-8P0DP01 117 aa11.65□□□□□ -0.54
C9orf3-202ENST00000297979 SULT1A1P50225 295 aa11.65□□□□□ -0.54
C9orf3-202ENST00000297979 DYNLT3P51808 116 aa11.65□□□□□ -0.54
C9orf3-202ENST00000297979 RNF212Q495C1 297 aa11.65□□□□□ -0.54
C9orf3-202ENST00000297979 TMEM217Q8N7C4 229 aa11.65□□□□□ -0.54
C9orf3-202ENST00000297979 ANAPC16Q96DE5 110 aa11.65□□□□□ -0.54
C9orf3-202ENST00000297979 NUDT11Q96G61 164 aa11.65□□□□□ -0.54
C9orf3-202ENST00000297979 IGSF10Q6WRI0 2623 aa11.65□□□□□ -0.54
C9orf3-202ENST00000297979 OR9G9P0C7N8 305 aa11.65□□□□□ -0.54
C9orf3-202ENST00000297979 FAM157CP0CG43 387 aa11.65□□□□□ -0.54
C9orf3-202ENST00000297979 CDKN1AP38936 164 aa11.65□□□□□ -0.54
C9orf3-202ENST00000297979 TMEM267Q0VDI3 215 aaPredicted RBP11.65□□□□□ -0.54
C9orf3-202ENST00000297979 LINC00311Q8N616 119 aa11.65□□□□□ -0.54
C9orf3-202ENST00000297979 REG4Q9BYZ8 158 aa11.65□□□□□ -0.54
C9orf3-202ENST00000297979 USP24Q9UPU5 2620 aa11.64□□□□□ -0.55
C9orf3-202ENST00000297979 J3QR06 171 aa11.64□□□□□ -0.55
C9orf3-202ENST00000297979 DLEU1O43261 78 aa11.64□□□□□ -0.55
C9orf3-202ENST00000297979 CRYGCP07315 174 aa11.64□□□□□ -0.55
C9orf3-202ENST00000297979 CT45A6P0DMU7 189 aa11.64□□□□□ -0.55
C9orf3-202ENST00000297979 CT45A5P0DMU8 189 aa11.64□□□□□ -0.55
C9orf3-202ENST00000297979 CT45A7P0DMV0 189 aa11.64□□□□□ -0.55
C9orf3-202ENST00000297979 WDR25Q64LD2 544 aaPredicted RBP11.64□□□□□ -0.55
C9orf3-202ENST00000297979 OR1S2Q8NGQ3 325 aa11.64□□□□□ -0.55
C9orf3-202ENST00000297979 OR10X1Q8NGY0 326 aa11.64□□□□□ -0.55
C9orf3-202ENST00000297979 RNASE8Q8TDE3 154 aaKnown RBP11.64□□□□□ -0.55
C9orf3-202ENST00000297979 HRNRQ86YZ3 2850 aaPredicted RBP11.64□□□□□ -0.55
C9orf3-202ENST00000297979 CACNA1BQ00975 2339 aa11.64□□□□□ -0.55
C9orf3-202ENST00000297979 TEX46H3BTG2 121 aa11.64□□□□□ -0.55
C9orf3-202ENST00000297979 PRB1P04280 392 aa11.64□□□□□ -0.55
C9orf3-202ENST00000297979 VKORC1L1Q8N0U8 176 aa11.64□□□□□ -0.55
C9orf3-202ENST00000297979 C11orf42Q8N5U0 333 aa11.64□□□□□ -0.55
C9orf3-202ENST00000297979 OR9G1Q8NH87 305 aa11.64□□□□□ -0.55
C9orf3-202ENST00000297979 BBC3Q96PG8 261 aaPredicted RBP11.64□□□□□ -0.55
C9orf3-202ENST00000297979 H2AFB1P0C5Y9 115 aa11.64□□□□□ -0.55
C9orf3-202ENST00000297979 SEC11BP0C7V7 166 aa11.64□□□□□ -0.55
C9orf3-202ENST00000297979 SULT1A2P50226 295 aa11.64□□□□□ -0.55
C9orf3-202ENST00000297979 RTL8BQ17RB0 113 aa11.64□□□□□ -0.55
C9orf3-202ENST00000297979 FAM71F2Q6NXP2 309 aa11.64□□□□□ -0.55
C9orf3-202ENST00000297979 C8orf46Q8TAG6 207 aa11.64□□□□□ -0.55
C9orf3-202ENST00000297979 RCC1LQ96I51 464 aaKnown RBP11.64□□□□□ -0.55
C9orf3-202ENST00000297979 ZNF705EA8MWA4 302 aaPredicted RBP11.63□□□□□ -0.55
C9orf3-202ENST00000297979 SPP1P10451 314 aa11.63□□□□□ -0.55
C9orf3-202ENST00000297979 FGF8P55075 233 aaPredicted RBP11.63□□□□□ -0.55
C9orf3-202ENST00000297979 OR2B8PP59922 312 aa11.63□□□□□ -0.55
C9orf3-202ENST00000297979 SPANXN5Q5MJ07 72 aa11.63□□□□□ -0.55
C9orf3-202ENST00000297979 DHRS7BQ6IAN0 325 aaPredicted RBP11.63□□□□□ -0.55
C9orf3-202ENST00000297979 HSD17B11Q8NBQ5 300 aa11.63□□□□□ -0.55
C9orf3-202ENST00000297979 OR4A16Q8NH70 328 aa11.63□□□□□ -0.55
C9orf3-202ENST00000297979 ZNF48Q96MX3 618 aaPredicted RBP11.63□□□□□ -0.55
C9orf3-202ENST00000297979 ATP5SQ99766 215 aa11.63□□□□□ -0.55
C9orf3-202ENST00000297979 ATG101Q9BSB4 218 aa11.63□□□□□ -0.55
C9orf3-202ENST00000297979 QTRT1Q9BXR0 403 aaKnown RBP11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms