RNA–Protein interactions for RNA: ENST00000261726.10

CUX2-201, Transcript of cut like homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CUX2, Length 6,844 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-201ENST00000261726 FOXA3P55318 350 aaPredicted RBP12.2□□□□□ -0.46
CUX2-201ENST00000261726 IFNL4K9M1U5 179 aa12.2□□□□□ -0.46
CUX2-201ENST00000261726 ERGP11308 486 aa12.2□□□□□ -0.46
CUX2-201ENST00000261726 RNASE4P34096 147 aaKnown RBP12.2□□□□□ -0.46
CUX2-201ENST00000261726 CENPWQ5EE01 88 aa12.2□□□□□ -0.46
CUX2-201ENST00000261726 WDR82Q6UXN9 313 aa12.2□□□□□ -0.46
CUX2-201ENST00000261726 SLC22A18ASQ8N1D0 253 aa12.2□□□□□ -0.46
CUX2-201ENST00000261726 DICER1Q9UPY3 1922 aaKnown RBP12.2□□□□□ -0.46
CUX2-201ENST00000261726 DNAJC13O75165 2243 aa12.2□□□□□ -0.46
CUX2-201ENST00000261726 PRR19A6NJB7 356 aa12.2□□□□□ -0.46
CUX2-201ENST00000261726 FSTP19883 344 aa12.2□□□□□ -0.46
CUX2-201ENST00000261726 RND3P61587 244 aa12.2□□□□□ -0.46
CUX2-201ENST00000261726 FAM209BQ5JX69 171 aa12.2□□□□□ -0.46
CUX2-201ENST00000261726 ZNF818PQ6ZRF7 136 aa12.2□□□□□ -0.46
CUX2-201ENST00000261726 DNM1P46Q6ZS02 220 aa12.2□□□□□ -0.46
CUX2-201ENST00000261726 TXNDC17Q9BRA2 123 aa12.2□□□□□ -0.46
CUX2-201ENST00000261726 ZNF638Q14966 1978 aaKnown RBP12.2□□□□□ -0.46
CUX2-201ENST00000261726 GPR132Q9UNW8 380 aa12.2□□□□□ -0.46
CUX2-201ENST00000261726 SAA1P0DJI8 122 aaPredicted RBP12.2□□□□□ -0.46
CUX2-201ENST00000261726 ARID2Q68CP9 1835 aa12.2□□□□□ -0.46
CUX2-201ENST00000261726 OR5AN1Q8NGI8 311 aa12.2□□□□□ -0.46
CUX2-201ENST00000261726 SRXN1Q9BYN0 137 aa12.2□□□□□ -0.46
CUX2-201ENST00000261726 TCF19Q9Y242 345 aa12.2□□□□□ -0.46
CUX2-201ENST00000261726 IGHV3OR16-8A0A075B7F1 116 aa12.19□□□□□ -0.46
CUX2-201ENST00000261726 A0A1W2PQF6 199 aa12.19□□□□□ -0.46
CUX2-201ENST00000261726 ASIPP42127 132 aa12.19□□□□□ -0.46
CUX2-201ENST00000261726 LEMD1Q68G75 181 aa12.19□□□□□ -0.46
CUX2-201ENST00000261726 CFAP161Q6P656 301 aa12.19□□□□□ -0.46
CUX2-201ENST00000261726 NDUFA3O95167 84 aa12.19□□□□□ -0.46
CUX2-201ENST00000261726 HBBP68871 147 aa12.19□□□□□ -0.46
CUX2-201ENST00000261726 SLC25A47Q6Q0C1 308 aa12.19□□□□□ -0.46
CUX2-201ENST00000261726 RNASEH2CQ8TDP1 164 aaKnown RBP12.19□□□□□ -0.46
CUX2-201ENST00000261726 DDTP30046 118 aa12.19□□□□□ -0.46
CUX2-201ENST00000261726 RPL39P5Q59GN2 51 aa12.19□□□□□ -0.46
CUX2-201ENST00000261726 FAM169BQ8N8A8 192 aa12.19□□□□□ -0.46
CUX2-201ENST00000261726 ST6GALNAC6Q969X2 333 aa12.19□□□□□ -0.46
CUX2-201ENST00000261726 WNT10AQ9GZT5 417 aa12.19□□□□□ -0.46
CUX2-201ENST00000261726 JPT1Q9UK76 154 aa12.19□□□□□ -0.46
CUX2-201ENST00000261726 TRIP12Q14669 1992 aaPredicted RBP12.19□□□□□ -0.46
CUX2-201ENST00000261726 LINC01587Q99440 93 aa12.19□□□□□ -0.46
CUX2-201ENST00000261726 KIAA0100Q14667 2235 aaKnown RBP12.19□□□□□ -0.46
CUX2-201ENST00000261726 TRAV12-3A0A0B4J271 114 aa12.19□□□□□ -0.46
CUX2-201ENST00000261726 MALP21145 153 aa12.19□□□□□ -0.46
CUX2-201ENST00000261726 TMEM186Q96B77 213 aa12.19□□□□□ -0.46
CUX2-201ENST00000261726 PMCHL2Q9BQD1 86 aa12.19□□□□□ -0.46
CUX2-201ENST00000261726 ALX4Q9H161 411 aaPredicted RBP12.19□□□□□ -0.46
CUX2-201ENST00000261726 CFDP00746 253 aaPredicted RBP12.18□□□□□ -0.46
CUX2-201ENST00000261726 CBLN1P23435 193 aa12.18□□□□□ -0.46
CUX2-201ENST00000261726 SCGB3A1Q96QR1 104 aa12.18□□□□□ -0.46
CUX2-201ENST00000261726 TRPM6Q9BX84 2022 aa12.18□□□□□ -0.46
CUX2-201ENST00000261726 HLA-DQB1P01920 261 aa12.18□□□□□ -0.46
CUX2-201ENST00000261726 ZNF146Q15072 292 aa12.18□□□□□ -0.46
CUX2-201ENST00000261726 ZNF660Q6AZW8 331 aaPredicted RBP12.18□□□□□ -0.46
CUX2-201ENST00000261726 CLDND2Q8NHS1 167 aa12.18□□□□□ -0.46
CUX2-201ENST00000261726 CRYBA2P53672 197 aa12.18□□□□□ -0.46
CUX2-201ENST00000261726 TYMSP04818 313 aa12.18□□□□□ -0.46
CUX2-201ENST00000261726 MBD3L1Q8WWY6 194 aa12.18□□□□□ -0.46
CUX2-201ENST00000261726 FOXA2Q9Y261 457 aaPredicted RBP12.18□□□□□ -0.46
CUX2-201ENST00000261726 WDR90Q96KV7 1748 aa12.18□□□□□ -0.46
CUX2-201ENST00000261726 APOMO95445 188 aa12.18□□□□□ -0.46
CUX2-201ENST00000261726 GCHFRP30047 84 aa12.18□□□□□ -0.46
CUX2-201ENST00000261726 MRPL32Q9BYC8 188 aaKnown RBP12.18□□□□□ -0.46
CUX2-201ENST00000261726 CNTFRP26992 372 aa12.17□□□□□ -0.46
CUX2-201ENST00000261726 PKIBQ9C010 78 aa12.17□□□□□ -0.46
CUX2-201ENST00000261726 PARP14Q460N5 1801 aa12.17□□□□□ -0.46
CUX2-201ENST00000261726 H7C1H1 209 aa12.17□□□□□ -0.46
CUX2-201ENST00000261726 C1QAP02745 245 aa12.17□□□□□ -0.46
CUX2-201ENST00000261726 STAG3L3P0CL85 134 aa12.17□□□□□ -0.46
CUX2-201ENST00000261726 PCOLCEQ15113 449 aa12.17□□□□□ -0.46
CUX2-201ENST00000261726 CYP2G1PQ6ZSU1 146 aa12.17□□□□□ -0.46
CUX2-201ENST00000261726 ZNRF1Q8ND25 227 aa12.17□□□□□ -0.46
CUX2-201ENST00000261726 AQP3Q92482 292 aa12.17□□□□□ -0.46
CUX2-201ENST00000261726 KCNK17Q96T54 332 aa12.17□□□□□ -0.46
CUX2-201ENST00000261726 TMEM74BQ9NUR3 256 aa12.17□□□□□ -0.46
CUX2-201ENST00000261726 TRGV2A0A075B6R0 118 aa12.17□□□□□ -0.46
CUX2-201ENST00000261726 NPIPB4C9JG80 1138 aa12.17□□□□□ -0.46
CUX2-201ENST00000261726 SYNGR3O43761 229 aa12.17□□□□□ -0.46
CUX2-201ENST00000261726 C11orf68Q9H3H3 251 aaKnown RBP12.17□□□□□ -0.46
CUX2-201ENST00000261726 PLSCR2Q9NRY7 297 aa12.17□□□□□ -0.46
CUX2-201ENST00000261726 SEMA5BQ9P283 1151 aa12.17□□□□□ -0.46
CUX2-201ENST00000261726 LHFPL6Q9Y693 200 aa12.17□□□□□ -0.46
CUX2-201ENST00000261726 RBMY1BA6NDE4 496 aaKnown RBP12.17□□□□□ -0.46
CUX2-201ENST00000261726 RBMY1EA6NEQ0 496 aaKnown RBP12.17□□□□□ -0.46
CUX2-201ENST00000261726 RBMY1DP0C7P1 496 aaKnown RBP12.17□□□□□ -0.46
CUX2-201ENST00000261726 RBMY1A1P0DJD3 496 aaKnown RBP12.17□□□□□ -0.46
CUX2-201ENST00000261726 RBMY1CP0DJD4 496 aa12.17□□□□□ -0.46
CUX2-201ENST00000261726 FHITP49789 147 aa12.17□□□□□ -0.46
CUX2-201ENST00000261726 FOXH1O75593 365 aa12.17□□□□□ -0.46
CUX2-201ENST00000261726 CTAG1AP78358 180 aa12.17□□□□□ -0.46
CUX2-201ENST00000261726 REPIN1Q9BWE0 567 aaKnown RBP12.17□□□□□ -0.46
CUX2-201ENST00000261726 ZNF729A6NN14 1252 aaPredicted RBP12.17□□□□□ -0.46
CUX2-201ENST00000261726 HOXA5P20719 270 aa12.17□□□□□ -0.46
CUX2-201ENST00000261726 A0A1B0GWB2 263 aa12.16□□□□□ -0.46
CUX2-201ENST00000261726 H3BRM9 83 aa12.16□□□□□ -0.46
CUX2-201ENST00000261726 FAM209AQ5JX71 171 aa12.16□□□□□ -0.46
CUX2-201ENST00000261726 SCARF2Q96GP6 870 aaPredicted RBP12.16□□□□□ -0.46
CUX2-201ENST00000261726 C14orf144Q96I85 54 aa12.16□□□□□ -0.46
CUX2-201ENST00000261726 TMEM106BQ9NUM4 274 aa12.16□□□□□ -0.46
CUX2-201ENST00000261726 KNL1Q8NG31 2342 aa12.16□□□□□ -0.46
CUX2-201ENST00000261726 SBF1O95248 1867 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms