RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 RELBQ01201 579 aa13.58□□□□□ -0.23
HOXD3-201ENST00000249440 MSMPQ1L6U9 139 aa13.58□□□□□ -0.23
HOXD3-201ENST00000249440 FAM209BQ5JX69 171 aa13.58□□□□□ -0.23
HOXD3-201ENST00000249440 VKORC1L1Q8N0U8 176 aa13.58□□□□□ -0.23
HOXD3-201ENST00000249440 Q8TCH9 128 aa13.58□□□□□ -0.23
HOXD3-201ENST00000249440 TET2Q6N021 2002 aaPredicted RBP13.58□□□□□ -0.23
HOXD3-201ENST00000249440 RRHO14718 337 aa13.58□□□□□ -0.24
HOXD3-201ENST00000249440 CRYAAP02489 173 aa13.58□□□□□ -0.24
HOXD3-201ENST00000249440 HIST1H1BP16401 226 aaKnown RBP13.58□□□□□ -0.24
HOXD3-201ENST00000249440 RAB7AP51149 207 aa13.58□□□□□ -0.24
HOXD3-201ENST00000249440 DEFB109BQ30KR1 87 aa13.58□□□□□ -0.24
HOXD3-201ENST00000249440 GCSAMLQ5JQS6 135 aa13.58□□□□□ -0.24
HOXD3-201ENST00000249440 DNLZQ5SXM8 178 aa13.58□□□□□ -0.24
HOXD3-201ENST00000249440 ALKBH2Q6NS38 261 aa13.58□□□□□ -0.24
HOXD3-201ENST00000249440 MOGAT3Q86VF5 341 aa13.58□□□□□ -0.24
HOXD3-201ENST00000249440 TMEM183AQ8IXX5 376 aa13.58□□□□□ -0.24
HOXD3-201ENST00000249440 PACRGQ96M98 296 aaPredicted RBP13.58□□□□□ -0.24
HOXD3-201ENST00000249440 RAB9BQ9NP90 201 aa13.58□□□□□ -0.24
HOXD3-201ENST00000249440 TMEM140Q9NV12 185 aa13.58□□□□□ -0.24
HOXD3-201ENST00000249440 CALYQ9NYX4 217 aa13.58□□□□□ -0.24
HOXD3-201ENST00000249440 CADP27708 2225 aa13.58□□□□□ -0.24
HOXD3-201ENST00000249440 NBEAQ8NFP9 2946 aa13.58□□□□□ -0.24
HOXD3-201ENST00000249440 A0A1W2PPQ1 181 aa13.57□□□□□ -0.24
HOXD3-201ENST00000249440 M0R1B8 84 aa13.57□□□□□ -0.24
HOXD3-201ENST00000249440 IGHV3-7P01780 117 aa13.57□□□□□ -0.24
HOXD3-201ENST00000249440 SRP14P37108 136 aaKnown RBP13.57□□□□□ -0.24
HOXD3-201ENST00000249440 KLF3P57682 345 aaPredicted RBP13.57□□□□□ -0.24
HOXD3-201ENST00000249440 TIMM23BQ5SRD1 257 aa13.57□□□□□ -0.24
HOXD3-201ENST00000249440 CST9LP1Q5W188 147 aa13.57□□□□□ -0.24
HOXD3-201ENST00000249440 SEM1Q6ZVN7 128 aa13.57□□□□□ -0.24
HOXD3-201ENST00000249440 MEGF10Q96KG7 1140 aa13.57□□□□□ -0.24
HOXD3-201ENST00000249440 KCNIP2Q9NS61 270 aa13.57□□□□□ -0.24
HOXD3-201ENST00000249440 ITGB1BP1O14713 200 aa13.57□□□□□ -0.24
HOXD3-201ENST00000249440 LHBP01229 141 aa13.57□□□□□ -0.24
HOXD3-201ENST00000249440 NPPCP23582 126 aa13.57□□□□□ -0.24
HOXD3-201ENST00000249440 GLRXP35754 106 aa13.57□□□□□ -0.24
HOXD3-201ENST00000249440 KCNIP4Q6PIL6 250 aa13.57□□□□□ -0.24
HOXD3-201ENST00000249440 OR4S2Q8NH73 311 aa13.57□□□□□ -0.24
HOXD3-201ENST00000249440 HIST1H2BLQ99880 126 aa13.57□□□□□ -0.24
HOXD3-201ENST00000249440 TXNDC17Q9BRA2 123 aa13.57□□□□□ -0.24
HOXD3-201ENST00000249440 PCGF1Q9BSM1 259 aa13.57□□□□□ -0.24
HOXD3-201ENST00000249440 ELOVL1Q9BW60 279 aa13.57□□□□□ -0.24
HOXD3-201ENST00000249440 NCOR1P1Q9H4R4 102 aa13.57□□□□□ -0.24
HOXD3-201ENST00000249440 PIEZO1Q92508 2521 aa13.56□□□□□ -0.24
HOXD3-201ENST00000249440 PRSS46E5RG02 174 aa13.56□□□□□ -0.24
HOXD3-201ENST00000249440 RD3LP0DJH9 198 aa13.56□□□□□ -0.24
HOXD3-201ENST00000249440 CDPF1Q6NVV7 123 aa13.56□□□□□ -0.24
HOXD3-201ENST00000249440 LURAP1LQ8IV03 231 aa13.56□□□□□ -0.24
HOXD3-201ENST00000249440 ZADH2Q8N4Q0 377 aa13.56□□□□□ -0.24
HOXD3-201ENST00000249440 OR2T10Q8NGZ9 312 aa13.56□□□□□ -0.24
HOXD3-201ENST00000249440 DDB2Q92466 427 aa13.56□□□□□ -0.24
HOXD3-201ENST00000249440 PATZ1Q9HBE1 687 aaKnown RBP13.56□□□□□ -0.24
HOXD3-201ENST00000249440 GFOD1Q9NXC2 390 aa13.56□□□□□ -0.24
HOXD3-201ENST00000249440 DSCAML1Q8TD84 2053 aa13.56□□□□□ -0.24
HOXD3-201ENST00000249440 TRBV23-1A0A0A0MS06 115 aa13.56□□□□□ -0.24
HOXD3-201ENST00000249440 TRAV3A0A0B4J244 114 aa13.56□□□□□ -0.24
HOXD3-201ENST00000249440 TRGV8A0A0C4DH27 118 aa13.56□□□□□ -0.24
HOXD3-201ENST00000249440 F6UZH7 168 aa13.56□□□□□ -0.24
HOXD3-201ENST00000249440 TMPRSS2O15393 492 aa13.56□□□□□ -0.24
HOXD3-201ENST00000249440 SPRY3O43610 288 aa13.56□□□□□ -0.24
HOXD3-201ENST00000249440 UBE2G2P60604 165 aa13.56□□□□□ -0.24
HOXD3-201ENST00000249440 ABHD12Q8N2K0 398 aa13.56□□□□□ -0.24
HOXD3-201ENST00000249440 MS4A5Q9H3V2 200 aa13.56□□□□□ -0.24
HOXD3-201ENST00000249440 NPVFQ9HCQ7 196 aa13.56□□□□□ -0.24
HOXD3-201ENST00000249440 DSCAMO60469 2012 aa13.56□□□□□ -0.24
HOXD3-201ENST00000249440 GGCTO75223 188 aaKnown RBP13.55□□□□□ -0.24
HOXD3-201ENST00000249440 CD99P14209 185 aa13.55□□□□□ -0.24
HOXD3-201ENST00000249440 ATP5G3P48201 142 aa13.55□□□□□ -0.24
HOXD3-201ENST00000249440 GNB1P62873 340 aa13.55□□□□□ -0.24
HOXD3-201ENST00000249440 SPRNQ5BIV9 151 aa13.55□□□□□ -0.24
HOXD3-201ENST00000249440 LINC01551Q86U37 167 aa13.55□□□□□ -0.24
HOXD3-201ENST00000249440 MGST2Q99735 147 aa13.55□□□□□ -0.24
HOXD3-201ENST00000249440 TCF19Q9Y242 345 aa13.55□□□□□ -0.24
HOXD3-201ENST00000249440 PXMP4Q9Y6I8 212 aa13.55□□□□□ -0.24
HOXD3-201ENST00000249440 BSNQ9UPA5 3926 aa13.55□□□□□ -0.24
HOXD3-201ENST00000249440 SLC31A2O15432 143 aa13.55□□□□□ -0.24
HOXD3-201ENST00000249440 CEACAM4O75871 244 aa13.55□□□□□ -0.24
HOXD3-201ENST00000249440 STAG3L2P0CL84 134 aa13.55□□□□□ -0.24
HOXD3-201ENST00000249440 STAG3L3P0CL85 134 aa13.55□□□□□ -0.24
HOXD3-201ENST00000249440 CGB3P0DN86 165 aa13.55□□□□□ -0.24
HOXD3-201ENST00000249440 CGB7P0DN87 165 aa13.55□□□□□ -0.24
HOXD3-201ENST00000249440 CLEC12BQ2HXU8 276 aa13.55□□□□□ -0.24
HOXD3-201ENST00000249440 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.55□□□□□ -0.24
HOXD3-201ENST00000249440 OR5T1Q8NG75 326 aa13.55□□□□□ -0.24
HOXD3-201ENST00000249440 ITLN1Q8WWA0 313 aa13.55□□□□□ -0.24
HOXD3-201ENST00000249440 ACY3Q96HD9 319 aa13.55□□□□□ -0.24
HOXD3-201ENST00000249440 GGTLC1Q9BX51 225 aa13.55□□□□□ -0.24
HOXD3-201ENST00000249440 PRDM13Q9H4Q3 707 aa13.55□□□□□ -0.24
HOXD3-201ENST00000249440 TANC2Q9HCD6 1990 aa13.54□□□□□ -0.24
HOXD3-201ENST00000249440 C15orf61A6NNL5 157 aa13.54□□□□□ -0.24
HOXD3-201ENST00000249440 NDUFB4O95168 129 aa13.54□□□□□ -0.24
HOXD3-201ENST00000249440 CXorf1O96002 111 aa13.54□□□□□ -0.24
HOXD3-201ENST00000249440 TYMSP04818 313 aa13.54□□□□□ -0.24
HOXD3-201ENST00000249440 C17orf58Q2M2W7 97 aa13.54□□□□□ -0.24
HOXD3-201ENST00000249440 C3orf36Q3SXR2 165 aa13.54□□□□□ -0.24
HOXD3-201ENST00000249440 VHLLQ6RSH7 139 aa13.54□□□□□ -0.24
HOXD3-201ENST00000249440 ZNF474Q6S9Z5 364 aaPredicted RBP13.54□□□□□ -0.24
HOXD3-201ENST00000249440 CISD2Q8N5K1 135 aaKnown RBP13.54□□□□□ -0.24
HOXD3-201ENST00000249440 OR1P1Q8NH06 330 aa13.54□□□□□ -0.24
HOXD3-201ENST00000249440 TMEM170AQ8WVE7 144 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms