RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 ZNRF1Q8ND25 227 aa12.15□□□□□ -0.46
SHROOM1-208ENST00000617339 J3QT63 122 aa12.15□□□□□ -0.47
SHROOM1-208ENST00000617339 SH2D1BO14796 132 aa12.15□□□□□ -0.47
SHROOM1-208ENST00000617339 MLNRO43193 412 aa12.15□□□□□ -0.47
SHROOM1-208ENST00000617339 PGLYRP1O75594 196 aaPredicted RBP12.15□□□□□ -0.47
SHROOM1-208ENST00000617339 RNASEH2CQ8TDP1 164 aaKnown RBP12.15□□□□□ -0.47
SHROOM1-208ENST00000617339 LRRC29Q8WV35 223 aa12.15□□□□□ -0.47
SHROOM1-208ENST00000617339 CBY3A6NI87 242 aa12.14□□□□□ -0.47
SHROOM1-208ENST00000617339 KIAA1324LA8MWY0 1029 aaPredicted RBP12.14□□□□□ -0.47
SHROOM1-208ENST00000617339 HAND1O96004 215 aa12.14□□□□□ -0.47
SHROOM1-208ENST00000617339 RAC2P15153 192 aa12.14□□□□□ -0.47
SHROOM1-208ENST00000617339 LY6DQ14210 128 aa12.14□□□□□ -0.47
SHROOM1-208ENST00000617339 TMEM241Q24JQ0 296 aa12.14□□□□□ -0.47
SHROOM1-208ENST00000617339 TDRG1Q3Y452 100 aa12.14□□□□□ -0.47
SHROOM1-208ENST00000617339 ASCL4Q6XD76 172 aa12.14□□□□□ -0.47
SHROOM1-208ENST00000617339 C22orf34Q6ZV56 151 aa12.14□□□□□ -0.47
SHROOM1-208ENST00000617339 GATAD1Q8WUU5 269 aa12.14□□□□□ -0.47
SHROOM1-208ENST00000617339 MS4A10Q96PG2 267 aa12.14□□□□□ -0.47
SHROOM1-208ENST00000617339 SPOCK3Q9BQ16 436 aa12.14□□□□□ -0.47
SHROOM1-208ENST00000617339 CACNG5Q9UF02 275 aa12.14□□□□□ -0.47
SHROOM1-208ENST00000617339 TLN2Q9Y4G6 2542 aa12.14□□□□□ -0.47
SHROOM1-208ENST00000617339 ZNF737O75373 536 aa12.14□□□□□ -0.47
SHROOM1-208ENST00000617339 S100A7P31151 101 aa12.14□□□□□ -0.47
SHROOM1-208ENST00000617339 ZNF726P1Q15940 193 aa12.14□□□□□ -0.47
SHROOM1-208ENST00000617339 KRTAP27-1Q3LI81 207 aa12.14□□□□□ -0.47
SHROOM1-208ENST00000617339 SPANXN5Q5MJ07 72 aa12.14□□□□□ -0.47
SHROOM1-208ENST00000617339 MOGAT3Q86VF5 341 aa12.14□□□□□ -0.47
SHROOM1-208ENST00000617339 SELENOHQ8IZQ5 122 aaKnown RBP12.14□□□□□ -0.47
SHROOM1-208ENST00000617339 LHX4Q969G2 390 aa12.14□□□□□ -0.47
SHROOM1-208ENST00000617339 SPIN2AQ99865 258 aa12.14□□□□□ -0.47
SHROOM1-208ENST00000617339 SPIN2BQ9BPZ2 258 aa12.14□□□□□ -0.47
SHROOM1-208ENST00000617339 TAAR3PQ9P1P4 343 aa12.14□□□□□ -0.47
SHROOM1-208ENST00000617339 NAGKQ9UJ70 344 aa12.14□□□□□ -0.47
SHROOM1-208ENST00000617339 POLDIP2Q9Y2S7 368 aa12.14□□□□□ -0.47
SHROOM1-208ENST00000617339 OR5B21A6NL26 309 aa12.13□□□□□ -0.47
SHROOM1-208ENST00000617339 TMEM222Q9H0R3 208 aa12.13□□□□□ -0.47
SHROOM1-208ENST00000617339 MAP1LC3B2A6NCE7 125 aa12.13□□□□□ -0.47
SHROOM1-208ENST00000617339 CA11O75493 328 aa12.13□□□□□ -0.47
SHROOM1-208ENST00000617339 EGR1P18146 543 aa12.13□□□□□ -0.47
SHROOM1-208ENST00000617339 MAP1LC3BQ9GZQ8 125 aa12.13□□□□□ -0.47
SHROOM1-208ENST00000617339 OR2D2Q9H210 308 aa12.13□□□□□ -0.47
SHROOM1-208ENST00000617339 DECR2Q9NUI1 292 aa12.13□□□□□ -0.47
SHROOM1-208ENST00000617339 CISD1Q9NZ45 108 aaKnown RBP12.13□□□□□ -0.47
SHROOM1-208ENST00000617339 GRIFINA4D1Z8 144 aa12.13□□□□□ -0.47
SHROOM1-208ENST00000617339 NUPR1O60356 82 aa12.13□□□□□ -0.47
SHROOM1-208ENST00000617339 CDS2O95674 445 aa12.13□□□□□ -0.47
SHROOM1-208ENST00000617339 UCP3P55916 312 aa12.13□□□□□ -0.47
SHROOM1-208ENST00000617339 ACSF3Q4G176 576 aaPredicted RBP12.13□□□□□ -0.47
SHROOM1-208ENST00000617339 TGIF2LYQ8IUE0 185 aa12.13□□□□□ -0.47
SHROOM1-208ENST00000617339 LRTM2Q8N967 370 aa12.13□□□□□ -0.47
SHROOM1-208ENST00000617339 OR4F5Q8NH21 305 aa12.13□□□□□ -0.47
SHROOM1-208ENST00000617339 OR4F4Q96R69 305 aa12.13□□□□□ -0.47
SHROOM1-208ENST00000617339 SLC25A22Q9H936 323 aa12.13□□□□□ -0.47
SHROOM1-208ENST00000617339 OR2W1Q9Y3N9 320 aa12.13□□□□□ -0.47
SHROOM1-208ENST00000617339 NAPSAO96009 420 aa12.12□□□□□ -0.47
SHROOM1-208ENST00000617339 PFN1P07737 140 aaKnown RBP12.12□□□□□ -0.47
SHROOM1-208ENST00000617339 RAB4AP20338 218 aa12.12□□□□□ -0.47
SHROOM1-208ENST00000617339 PRB3Q04118 309 aaPredicted RBP12.12□□□□□ -0.47
SHROOM1-208ENST00000617339 Q6ZRM9 215 aa12.12□□□□□ -0.47
SHROOM1-208ENST00000617339 STARD4Q96DR4 205 aa12.12□□□□□ -0.47
SHROOM1-208ENST00000617339 RIMS4Q9H426 269 aaPredicted RBP12.12□□□□□ -0.47
SHROOM1-208ENST00000617339 CLCF1Q9UBD9 225 aa12.12□□□□□ -0.47
SHROOM1-208ENST00000617339 VAX2Q9UIW0 290 aa12.12□□□□□ -0.47
SHROOM1-208ENST00000617339 PSG11Q9UQ72 335 aa12.12□□□□□ -0.47
SHROOM1-208ENST00000617339 CENPEQ02224 2701 aa12.12□□□□□ -0.47
SHROOM1-208ENST00000617339 HPRT1P00492 218 aa12.12□□□□□ -0.47
SHROOM1-208ENST00000617339 HNF1AP20823 631 aa12.12□□□□□ -0.47
SHROOM1-208ENST00000617339 TNFSF4P23510 183 aa12.12□□□□□ -0.47
SHROOM1-208ENST00000617339 FAM78BQ5VT40 261 aa12.12□□□□□ -0.47
SHROOM1-208ENST00000617339 H1FOOQ8IZA3 346 aaPredicted RBP12.12□□□□□ -0.47
SHROOM1-208ENST00000617339 WDR31Q8NA23 367 aa12.12□□□□□ -0.47
SHROOM1-208ENST00000617339 OR8G5Q8NG78 346 aa12.12□□□□□ -0.47
SHROOM1-208ENST00000617339 SLC39A9Q9NUM3 307 aa12.12□□□□□ -0.47
SHROOM1-208ENST00000617339 NAT8Q9UHE5 227 aa12.12□□□□□ -0.47
SHROOM1-208ENST00000617339 TNCP24821 2201 aa12.12□□□□□ -0.47
SHROOM1-208ENST00000617339 DEFA4P12838 97 aa12.12□□□□□ -0.47
SHROOM1-208ENST00000617339 G6PCP35575 357 aa12.12□□□□□ -0.47
SHROOM1-208ENST00000617339 Q6ZR03 302 aa12.12□□□□□ -0.47
SHROOM1-208ENST00000617339 TECTBQ96PL2 329 aa12.12□□□□□ -0.47
SHROOM1-208ENST00000617339 PATZ1Q9HBE1 687 aaKnown RBP12.12□□□□□ -0.47
SHROOM1-208ENST00000617339 PPP1R14DQ9NXH3 145 aa12.12□□□□□ -0.47
SHROOM1-208ENST00000617339 MALRD1Q5VYJ5 2156 aa12.12□□□□□ -0.47
SHROOM1-208ENST00000617339 ZNF320A2RRD8 509 aa12.11□□□□□ -0.47
SHROOM1-208ENST00000617339 RAMP3O60896 148 aa12.11□□□□□ -0.47
SHROOM1-208ENST00000617339 PCSK4Q6UW60 755 aa12.11□□□□□ -0.47
SHROOM1-208ENST00000617339 VKORC1L1Q8N0U8 176 aa12.11□□□□□ -0.47
SHROOM1-208ENST00000617339 OR2T10Q8NGZ9 312 aa12.11□□□□□ -0.47
SHROOM1-208ENST00000617339 DKK4Q9UBT3 224 aa12.11□□□□□ -0.47
SHROOM1-208ENST00000617339 AHRRA9YTQ3 701 aa12.11□□□□□ -0.47
SHROOM1-208ENST00000617339 CCL21O00585 134 aa12.11□□□□□ -0.47
SHROOM1-208ENST00000617339 RPL23P62829 140 aaKnown RBP12.11□□□□□ -0.47
SHROOM1-208ENST00000617339 C1orf185Q5T7R7 199 aa12.11□□□□□ -0.47
SHROOM1-208ENST00000617339 OR51G1Q8NGK1 321 aa12.11□□□□□ -0.47
SHROOM1-208ENST00000617339 GPR146Q96CH1 333 aa12.11□□□□□ -0.47
SHROOM1-208ENST00000617339 IL36GQ9NZH8 169 aa12.11□□□□□ -0.47
SHROOM1-208ENST00000617339 LOC102724200A0A096LPH7 203 aaPredicted RBP12.11□□□□□ -0.47
SHROOM1-208ENST00000617339 CNN1P51911 297 aaKnown RBP12.11□□□□□ -0.47
SHROOM1-208ENST00000617339 MSMPQ1L6U9 139 aa12.11□□□□□ -0.47
SHROOM1-208ENST00000617339 CSMD1Q96PZ7 3565 aa12.1□□□□□ -0.47
SHROOM1-208ENST00000617339 IGHV1-18A0A0C4DH31 117 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms