RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 OR2W1Q9Y3N9 320 aa8.89□□□□□ -0.99
LIG1-220ENST00000601091 SHANK1Q9Y566 2161 aa8.89□□□□□ -0.99
LIG1-220ENST00000601091 FAM90A10PA6NDY2 464 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 FAM90A18PA6NE21 464 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 FAM90A16PA6NEW6 464 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 FAM90A20PA6NIJ5 464 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 FAM90A8PA6NJQ4 464 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 FAM90A7PA6NKC0 464 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 FAM90A22PA8MWA6 464 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 FAM90A12PA8MX19 464 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 FAM90A5PA8MXJ8 464 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 FAM90A23PA8MXZ1 464 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 F5H768 121 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 H7BYZ3 331 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 SYNGR2O43760 224 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 SYNGR3O43761 229 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 KRASP01116 189 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 SCTP09683 121 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 FAM90A15PP0C7V4 464 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 FAM90A13PP0C7W8 464 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 FAM90A14PP0C7W9 464 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 FAM90A24PP0C7X0 464 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 F2RP25116 425 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 FFAR4Q5NUL3 377 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 INO80CQ6PI98 192 aaPredicted RBP8.88□□□□□ -0.99
LIG1-220ENST00000601091 MAP1LC3B2A6NCE7 125 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 THBS3P49746 956 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 HIST1H3AP68431 136 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 H3F3AP84243 136 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 CXorf66Q5JRM2 361 aaPredicted RBP8.88□□□□□ -0.99
LIG1-220ENST00000601091 TCTEX1D1Q8N7M0 179 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 MAP1LC3BQ9GZQ8 125 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 PPDPFQ9H3Y8 114 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 HEYLQ9NQ87 328 aaPredicted RBP8.88□□□□□ -0.99
LIG1-220ENST00000601091 CYTL1Q9NRR1 136 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 TAAR3PQ9P1P4 343 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 PPP5D1E7EU14 171 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 PITX3O75364 302 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 TNFSF15O95150 251 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 SPINK2P20155 84 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 MDH2P40926 338 aaKnown RBP8.88□□□□□ -0.99
LIG1-220ENST00000601091 PTGDSP41222 190 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 EDDM3AQ14507 147 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 OR1P1Q8NH06 330 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 OR4A16Q8NH70 328 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 BTF3L4Q96K17 158 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 TMEM100Q9NV29 134 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 KIAA1456Q9P272 454 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 IGKV1D-8A0A087WSZ0 117 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 LOC102723996A0A087X1L8 192 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 H3BQ15 152 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 CLDN34H7C241 214 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 NGFP01138 241 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 MMP9P14780 707 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 GLRXP35754 106 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 NPBWR2P48146 333 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 TDRG1Q3Y452 100 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 DOLPP1Q86YN1 238 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 SSBP4Q9BWG4 385 aaPredicted RBP8.88□□□□□ -0.99
LIG1-220ENST00000601091 ARRDC1-AS1Q9H2J1 176 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 PNRC2Q9NPJ4 139 aaKnown RBP8.88□□□□□ -0.99
LIG1-220ENST00000601091 DUSP13Q9UII6 198 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 OR51B2Q9Y5P1 312 aa8.88□□□□□ -0.99
LIG1-220ENST00000601091 TRGV5A0A0B4J1U4 118 aa8.87□□□□□ -0.99
LIG1-220ENST00000601091 COX5AP20674 150 aa8.87□□□□□ -0.99
LIG1-220ENST00000601091 CDKN1AP38936 164 aa8.87□□□□□ -0.99
LIG1-220ENST00000601091 MAGEA5P43359 124 aa8.87□□□□□ -0.99
LIG1-220ENST00000601091 HLA-DRB3P79483 266 aa8.87□□□□□ -0.99
LIG1-220ENST00000601091 OXLD1Q5BKU9 147 aa8.87□□□□□ -0.99
LIG1-220ENST00000601091 C1QL4Q86Z23 238 aa8.87□□□□□ -0.99
LIG1-220ENST00000601091 C5orf17Q8NAS9 161 aa8.87□□□□□ -0.99
LIG1-220ENST00000601091 DOCK7Q96N67 2140 aa8.87□□□□□ -0.99
LIG1-220ENST00000601091 PRDM14Q9GZV8 571 aa8.87□□□□□ -0.99
LIG1-220ENST00000601091 LAMP3Q9UQV4 416 aa8.87□□□□□ -0.99
LIG1-220ENST00000601091 POLR3KQ9Y2Y1 108 aaPredicted RBP8.87□□□□□ -0.99
LIG1-220ENST00000601091 SUMO1P63165 101 aaKnown RBP8.87□□□□□ -0.99
LIG1-220ENST00000601091 ZNF343Q6P1L6 599 aa8.87□□□□□ -0.99
LIG1-220ENST00000601091 TMEM183AQ8IXX5 376 aa8.87□□□□□ -0.99
LIG1-220ENST00000601091 RNF183Q96D59 192 aa8.87□□□□□ -0.99
LIG1-220ENST00000601091 ABHD14BQ96IU4 210 aa8.87□□□□□ -0.99
LIG1-220ENST00000601091 UBE2L5PA0A1B0GUS4 154 aa8.87□□□□□ -0.99
LIG1-220ENST00000601091 TMEM30CPA0ZSE6 113 aa8.87□□□□□ -0.99
LIG1-220ENST00000601091 MMP23AO75900 390 aa8.87□□□□□ -0.99
LIG1-220ENST00000601091 NDUFB8O95169 186 aa8.87□□□□□ -0.99
LIG1-220ENST00000601091 PPIAL4GP0DN37 164 aa8.87□□□□□ -0.99
LIG1-220ENST00000601091 MEOX1P50221 254 aa8.87□□□□□ -0.99
LIG1-220ENST00000601091 SRSF1Q07955 248 aaKnown RBP eCLIP8.87□□□□□ -0.993e-6■■■■□ 20.3
LIG1-220ENST00000601091 C1orf210Q8IVY1 113 aa8.87□□□□□ -0.99
LIG1-220ENST00000601091 SH3BGRL3Q9H299 93 aa8.87□□□□□ -0.99
LIG1-220ENST00000601091 KIAA2026Q5HYC2 2103 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 EMP1P54849 157 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 ZNF816Q0VGE8 651 aaPredicted RBP8.86□□□□□ -0.99
LIG1-220ENST00000601091 ANXA2RQ3ZCQ2 193 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 FAM78BQ5VT40 261 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 BTNL8Q6UX41 500 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 OR1B1Q8NGR6 318 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 OR4F5Q8NH21 305 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 VN1R17PQ8TDU5 208 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 OR4F4Q96R69 305 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 ZNF407Q9C0G0 2248 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms