RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 H3BMQ9 156 aa12.54□□□□□ -0.4
TRIM28-213ENST00000598355 BRI3O95415 125 aa12.54□□□□□ -0.4
TRIM28-213ENST00000598355 DUS4LO95620 317 aaKnown RBP12.54□□□□□ -0.4
TRIM28-213ENST00000598355 GNRHRP30968 328 aa12.54□□□□□ -0.4
TRIM28-213ENST00000598355 KIR2DS2P43631 304 aa12.54□□□□□ -0.4
TRIM28-213ENST00000598355 ACTBL2Q562R1 376 aa12.54□□□□□ -0.4
TRIM28-213ENST00000598355 UNQ5815/PRO19632Q6UWF5 114 aa12.54□□□□□ -0.4
TRIM28-213ENST00000598355 ZNF818PQ6ZRF7 136 aa12.54□□□□□ -0.4
TRIM28-213ENST00000598355 TMEM17Q86X19 198 aa12.54□□□□□ -0.4
TRIM28-213ENST00000598355 LAX1Q8IWV1 398 aa12.54□□□□□ -0.4
TRIM28-213ENST00000598355 PUSL1Q8N0Z8 303 aaKnown RBP12.54□□□□□ -0.4
TRIM28-213ENST00000598355 LFNGQ8NES3 379 aa12.54□□□□□ -0.4
TRIM28-213ENST00000598355 BORCS5Q969J3 196 aa12.54□□□□□ -0.4
TRIM28-213ENST00000598355 ISOC1Q96CN7 298 aa12.54□□□□□ -0.4
TRIM28-213ENST00000598355 GPHA2Q96T91 129 aa12.54□□□□□ -0.4
TRIM28-213ENST00000598355 GNB4Q9HAV0 340 aa12.54□□□□□ -0.4
TRIM28-213ENST00000598355 EXTL2Q9UBQ6 330 aa12.54□□□□□ -0.4
TRIM28-213ENST00000598355 FAM25AB3EWG3 89 aa12.53□□□□□ -0.4
TRIM28-213ENST00000598355 FAM25CB3EWG5 89 aa12.53□□□□□ -0.4
TRIM28-213ENST00000598355 FAM25GB3EWG6 89 aa12.53□□□□□ -0.4
TRIM28-213ENST00000598355 H3BUA1 57 aa12.53□□□□□ -0.4
TRIM28-213ENST00000598355 CCL24O00175 119 aa12.53□□□□□ -0.4
TRIM28-213ENST00000598355 PMP2P02689 132 aa12.53□□□□□ -0.4
TRIM28-213ENST00000598355 IGLL1P15814 213 aa12.53□□□□□ -0.4
TRIM28-213ENST00000598355 FXYD4P59646 89 aa12.53□□□□□ -0.4
TRIM28-213ENST00000598355 HERV-K104P61576 105 aa12.53□□□□□ -0.4
TRIM28-213ENST00000598355 DEFB136Q30KP8 78 aa12.53□□□□□ -0.4
TRIM28-213ENST00000598355 PDLIM3Q53GG5 364 aaPredicted RBP12.53□□□□□ -0.4
TRIM28-213ENST00000598355 OR2B11Q5JQS5 317 aa12.53□□□□□ -0.4
TRIM28-213ENST00000598355 VAX1Q5SQQ9 334 aa12.53□□□□□ -0.4
TRIM28-213ENST00000598355 IDO2Q6ZQW0 420 aa12.53□□□□□ -0.4
TRIM28-213ENST00000598355 GRPEL2Q8TAA5 225 aa12.53□□□□□ -0.4
TRIM28-213ENST00000598355 TMEM68Q96MH6 324 aa12.53□□□□□ -0.4
TRIM28-213ENST00000598355 ABHD1Q96SE0 405 aa12.53□□□□□ -0.4
TRIM28-213ENST00000598355 ZNF2Q9BSG1 426 aaPredicted RBP12.53□□□□□ -0.4
TRIM28-213ENST00000598355 SLIRPQ9GZT3 109 aaKnown RBP12.53□□□□□ -0.4
TRIM28-213ENST00000598355 ZNF430Q9H8G1 570 aaPredicted RBP12.53□□□□□ -0.4
TRIM28-213ENST00000598355 VSIG4Q9Y279 399 aa12.53□□□□□ -0.4
TRIM28-213ENST00000598355 A3GALT2U3KPV4 340 aa12.53□□□□□ -0.4
TRIM28-213ENST00000598355 CTDSP2O14595 271 aa12.52□□□□□ -0.41
TRIM28-213ENST00000598355 TNFSF12O43508 249 aa12.52□□□□□ -0.41
TRIM28-213ENST00000598355 CREBL2O60519 120 aaPredicted RBP12.52□□□□□ -0.41
TRIM28-213ENST00000598355 HLA-DMAP28067 261 aa12.52□□□□□ -0.41
TRIM28-213ENST00000598355 CATR1Q13166 79 aa12.52□□□□□ -0.41
TRIM28-213ENST00000598355 POU2AF1Q16633 256 aa12.52□□□□□ -0.41
TRIM28-213ENST00000598355 TMEM65Q6PI78 240 aa12.52□□□□□ -0.41
TRIM28-213ENST00000598355 TMEM167AQ8TBQ9 72 aa12.52□□□□□ -0.41
TRIM28-213ENST00000598355 ABHD5Q8WTS1 349 aa12.52□□□□□ -0.41
TRIM28-213ENST00000598355 C15orf40Q8WUR7 153 aa12.52□□□□□ -0.41
TRIM28-213ENST00000598355 DUX3Q96PT4 197 aa12.52□□□□□ -0.41
TRIM28-213ENST00000598355 RBM38Q9H0Z9 239 aaKnown RBP12.52□□□□□ -0.41
TRIM28-213ENST00000598355 SLA2Q9H6Q3 261 aa12.52□□□□□ -0.41
TRIM28-213ENST00000598355 MTFP1Q9UDX5 166 aa12.52□□□□□ -0.41
TRIM28-213ENST00000598355 CEPT1Q9Y6K0 416 aa12.52□□□□□ -0.41
TRIM28-213ENST00000598355 RAMP3O60896 148 aa12.51□□□□□ -0.41
TRIM28-213ENST00000598355 KBTBD11O94819 623 aa12.51□□□□□ -0.41
TRIM28-213ENST00000598355 GNB1P62873 340 aa12.51□□□□□ -0.41
TRIM28-213ENST00000598355 MMD2Q8IY49 270 aa12.51□□□□□ -0.41
TRIM28-213ENST00000598355 POC5Q8NA72 575 aa12.51□□□□□ -0.41
TRIM28-213ENST00000598355 OR6F1Q8NGZ6 308 aa12.51□□□□□ -0.41
TRIM28-213ENST00000598355 OR52I2Q8NH67 350 aa12.51□□□□□ -0.41
TRIM28-213ENST00000598355 VSTM2AQ8TAG5 236 aa12.51□□□□□ -0.41
TRIM28-213ENST00000598355 SRSF12Q8WXF0 261 aaKnown RBP12.51□□□□□ -0.41
TRIM28-213ENST00000598355 RHOVQ96L33 236 aa12.51□□□□□ -0.41
TRIM28-213ENST00000598355 NXF2Q9GZY0 626 aaKnown RBP12.51□□□□□ -0.41
TRIM28-213ENST00000598355 KLK11Q9UBX7 282 aa12.51□□□□□ -0.41
TRIM28-213ENST00000598355 SCOCQ9UIL1 159 aa12.51□□□□□ -0.41
TRIM28-213ENST00000598355 CNIH1O95406 144 aa12.5□□□□□ -0.41
TRIM28-213ENST00000598355 IL6RP08887 468 aaPredicted RBP12.5□□□□□ -0.41
TRIM28-213ENST00000598355 FGF2P09038 288 aa12.5□□□□□ -0.41
TRIM28-213ENST00000598355 TBPP20226 339 aa12.5□□□□□ -0.41
TRIM28-213ENST00000598355 EGFEM1PQ0D2K5 195 aa12.5□□□□□ -0.41
TRIM28-213ENST00000598355 TNXAQ16473 311 aa12.5□□□□□ -0.41
TRIM28-213ENST00000598355 FOXB2Q5VYV0 432 aa12.5□□□□□ -0.41
TRIM28-213ENST00000598355 VKORC1L1Q8N0U8 176 aa12.5□□□□□ -0.41
TRIM28-213ENST00000598355 SPAG16Q8N0X2 631 aa12.5□□□□□ -0.41
TRIM28-213ENST00000598355 CASTOR1Q8WTX7 329 aa12.5□□□□□ -0.41
TRIM28-213ENST00000598355 BET1LQ9NYM9 111 aa12.5□□□□□ -0.41
TRIM28-213ENST00000598355 GABARAPH6UMI1 98 aa12.49□□□□□ -0.41
TRIM28-213ENST00000598355 RGS5O15539 181 aa12.49□□□□□ -0.41
TRIM28-213ENST00000598355 NOL3O60936 208 aaKnown RBP12.49□□□□□ -0.41
TRIM28-213ENST00000598355 OR2A4O95047 310 aa12.49□□□□□ -0.41
TRIM28-213ENST00000598355 HRASP01112 189 aa12.49□□□□□ -0.41
TRIM28-213ENST00000598355 CD74P04233 296 aa12.49□□□□□ -0.41
TRIM28-213ENST00000598355 LGALS1P09382 135 aaKnown RBP12.49□□□□□ -0.41
TRIM28-213ENST00000598355 UCP3P55916 312 aa12.49□□□□□ -0.41
TRIM28-213ENST00000598355 TAS2R31P59538 309 aa12.49□□□□□ -0.41
TRIM28-213ENST00000598355 MRPS10P82664 201 aaKnown RBP12.49□□□□□ -0.41
TRIM28-213ENST00000598355 SSBP1Q04837 148 aaKnown RBP12.49□□□□□ -0.41
TRIM28-213ENST00000598355 AADACL3Q5VUY0 350 aa12.49□□□□□ -0.41
TRIM28-213ENST00000598355 LHFPL1Q86WI0 220 aa12.49□□□□□ -0.41
TRIM28-213ENST00000598355 ADAD2Q8NCV1 583 aaKnown RBP12.49□□□□□ -0.41
TRIM28-213ENST00000598355 OR11H1Q8NG94 326 aa12.49□□□□□ -0.41
TRIM28-213ENST00000598355 CD300LFQ8TDQ1 290 aa12.49□□□□□ -0.41
TRIM28-213ENST00000598355 SMIM4Q8WVI0 70 aa12.49□□□□□ -0.41
TRIM28-213ENST00000598355 OR2A7Q96R45 310 aa12.49□□□□□ -0.41
TRIM28-213ENST00000598355 DCUN1D5Q9BTE7 237 aa12.49□□□□□ -0.41
TRIM28-213ENST00000598355 MCRIP2Q9BUT9 160 aaKnown RBP12.49□□□□□ -0.41
TRIM28-213ENST00000598355 GPR61Q9BZJ8 451 aa12.49□□□□□ -0.41
TRIM28-213ENST00000598355 PLEKHA2Q9HB19 425 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms