RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 NPIPB5A8MRT5 1133 aa9.41□□□□□ -0.9
CCDC40-208ENST00000572270 E9PI62 339 aa9.41□□□□□ -0.9
CCDC40-208ENST00000572270 FKBP6O75344 327 aa9.41□□□□□ -0.9
CCDC40-208ENST00000572270 GPR183P32249 361 aa9.41□□□□□ -0.9
CCDC40-208ENST00000572270 TPBGQ13641 420 aa9.41□□□□□ -0.9
CCDC40-208ENST00000572270 RNF212Q495C1 297 aa9.41□□□□□ -0.9
CCDC40-208ENST00000572270 C10orf55Q5SWW7 151 aa9.41□□□□□ -0.9
CCDC40-208ENST00000572270 LIPKQ5VXJ0 399 aa9.41□□□□□ -0.9
CCDC40-208ENST00000572270 C19orf35Q6ZS72 473 aa9.41□□□□□ -0.9
CCDC40-208ENST00000572270 CEACAM19Q7Z692 300 aa9.41□□□□□ -0.9
CCDC40-208ENST00000572270 SPATA12Q7Z6I5 190 aa9.41□□□□□ -0.9
CCDC40-208ENST00000572270 MMD2Q8IY49 270 aa9.41□□□□□ -0.9
CCDC40-208ENST00000572270 TMEM190Q8WZ59 177 aa9.41□□□□□ -0.9
CCDC40-208ENST00000572270 CXorf58Q96LI9 332 aa9.41□□□□□ -0.9
CCDC40-208ENST00000572270 ELOA3CA0A087WX78 387 aaPredicted RBP9.4□□□□□ -0.9
CCDC40-208ENST00000572270 CRYZL1O95825 349 aa9.4□□□□□ -0.9
CCDC40-208ENST00000572270 HIST1H1BP16401 226 aaKnown RBP9.4□□□□□ -0.9
CCDC40-208ENST00000572270 NPY1RP25929 384 aa9.4□□□□□ -0.9
CCDC40-208ENST00000572270 TFPI2P48307 235 aa9.4□□□□□ -0.9
CCDC40-208ENST00000572270 HLA-DRB3P79483 266 aa9.4□□□□□ -0.9
CCDC40-208ENST00000572270 C12orf74Q32Q52 190 aa9.4□□□□□ -0.9
CCDC40-208ENST00000572270 ZNF880Q6PDB4 577 aa9.4□□□□□ -0.9
CCDC40-208ENST00000572270 ORAI1Q96D31 301 aa9.4□□□□□ -0.9
CCDC40-208ENST00000572270 FANCD2OSQ96PS1 177 aa9.4□□□□□ -0.9
CCDC40-208ENST00000572270 FYTTD1Q96QD9 318 aaKnown RBP9.4□□□□□ -0.9
CCDC40-208ENST00000572270 FAAP24Q9BTP7 215 aa9.4□□□□□ -0.9
CCDC40-208ENST00000572270 ZNF436Q9C0F3 470 aaPredicted RBP9.4□□□□□ -0.9
CCDC40-208ENST00000572270 RNF167Q9H6Y7 350 aa9.4□□□□□ -0.9
CCDC40-208ENST00000572270 CELA1Q9UNI1 258 aa9.4□□□□□ -0.9
CCDC40-208ENST00000572270 MFSD2BA6NFX1 497 aa9.39□□□□□ -0.91
CCDC40-208ENST00000572270 NAPSAO96009 420 aa9.39□□□□□ -0.91
CCDC40-208ENST00000572270 DEFA4P12838 97 aa9.39□□□□□ -0.91
CCDC40-208ENST00000572270 RPA2P15927 270 aa9.39□□□□□ -0.91
CCDC40-208ENST00000572270 CDK10Q15131 360 aa9.39□□□□□ -0.91
CCDC40-208ENST00000572270 TMEM41BQ5BJD5 291 aa9.39□□□□□ -0.91
CCDC40-208ENST00000572270 KDM4DQ6B0I6 523 aa9.39□□□□□ -0.91
CCDC40-208ENST00000572270 C6orf201Q7Z4U5 140 aa9.39□□□□□ -0.91
CCDC40-208ENST00000572270 C6orf223Q8N319 242 aa9.39□□□□□ -0.91
CCDC40-208ENST00000572270 NICN1Q9BSH3 213 aa9.39□□□□□ -0.91
CCDC40-208ENST00000572270 SCRT1Q9BWW7 348 aa9.39□□□□□ -0.91
CCDC40-208ENST00000572270 OR2D2Q9H210 308 aa9.39□□□□□ -0.91
CCDC40-208ENST00000572270 MGAT4AQ9UM21 535 aa9.39□□□□□ -0.91
CCDC40-208ENST00000572270 AGRNO00468 2067 aa9.38□□□□□ -0.91
CCDC40-208ENST00000572270 SNTNA6NMZ2 147 aa9.38□□□□□ -0.91
CCDC40-208ENST00000572270 TEX22C9J3V5 150 aa9.38□□□□□ -0.91
CCDC40-208ENST00000572270 G3V2T6 193 aa9.38□□□□□ -0.91
CCDC40-208ENST00000572270 J3QL48 77 aa9.38□□□□□ -0.91
CCDC40-208ENST00000572270 SAA1P0DJI8 122 aaPredicted RBP9.38□□□□□ -0.91
CCDC40-208ENST00000572270 IGFBP3P17936 291 aaPredicted RBP9.38□□□□□ -0.91
CCDC40-208ENST00000572270 SPATA24Q86W54 205 aa9.38□□□□□ -0.91
CCDC40-208ENST00000572270 OSR1Q8TAX0 266 aaPredicted RBP9.38□□□□□ -0.91
CCDC40-208ENST00000572270 SDHAF2Q9NX18 166 aa9.38□□□□□ -0.91
CCDC40-208ENST00000572270 RDH8Q9NYR8 311 aa9.38□□□□□ -0.91
CCDC40-208ENST00000572270 EXOGQ9Y2C4 368 aaKnown RBP9.38□□□□□ -0.91
CCDC40-208ENST00000572270 NACAE9PAV3 2078 aa9.38□□□□□ -0.91
CCDC40-208ENST00000572270 ZNF705EA8MWA4 302 aaPredicted RBP9.37□□□□□ -0.91
CCDC40-208ENST00000572270 TGOLN2O43493 480 aa9.37□□□□□ -0.91
CCDC40-208ENST00000572270 DCTN3O75935 186 aa9.37□□□□□ -0.91
CCDC40-208ENST00000572270 RPL27AP46776 148 aaKnown RBP9.37□□□□□ -0.91
CCDC40-208ENST00000572270 GTF2A1P52655 376 aaPredicted RBP9.37□□□□□ -0.91
CCDC40-208ENST00000572270 Q5VSD8 79 aa9.37□□□□□ -0.91
CCDC40-208ENST00000572270 STHQ8IWL8 128 aa9.37□□□□□ -0.91
CCDC40-208ENST00000572270 TRUB1Q8WWH5 349 aaKnown RBP9.37□□□□□ -0.91
CCDC40-208ENST00000572270 FRZBQ92765 325 aa9.37□□□□□ -0.91
CCDC40-208ENST00000572270 LGALS12Q96DT0 336 aa9.37□□□□□ -0.91
CCDC40-208ENST00000572270 FAM210BQ96KR6 192 aa9.37□□□□□ -0.91
CCDC40-208ENST00000572270 CMTM3Q96MX0 182 aa9.37□□□□□ -0.91
CCDC40-208ENST00000572270 OR2A7Q96R45 310 aa9.37□□□□□ -0.91
CCDC40-208ENST00000572270 CIB1Q99828 191 aa9.37□□□□□ -0.91
CCDC40-208ENST00000572270 C20orf24Q9BUV8 137 aa9.37□□□□□ -0.91
CCDC40-208ENST00000572270 FAM107BQ9H098 131 aa9.37□□□□□ -0.91
CCDC40-208ENST00000572270 RIMS4Q9H426 269 aaPredicted RBP9.37□□□□□ -0.91
CCDC40-208ENST00000572270 SLC2A9Q9NRM0 540 aa9.37□□□□□ -0.91
CCDC40-208ENST00000572270 IGKV3-7A0A075B6H7 116 aa9.36□□□□□ -0.91
CCDC40-208ENST00000572270 CRYGCP07315 174 aa9.36□□□□□ -0.91
CCDC40-208ENST00000572270 POLR2IP36954 125 aaKnown RBP9.36□□□□□ -0.91
CCDC40-208ENST00000572270 MEDAGQ5VYS4 303 aa9.36□□□□□ -0.91
CCDC40-208ENST00000572270 RPL22L1Q6P5R6 122 aaKnown RBP9.36□□□□□ -0.91
CCDC40-208ENST00000572270 SSX9Q7RTT3 188 aa9.36□□□□□ -0.91
CCDC40-208ENST00000572270 ZNF502Q8TBZ5 544 aa9.36□□□□□ -0.91
CCDC40-208ENST00000572270 ADTRPQ96IZ2 230 aa9.36□□□□□ -0.91
CCDC40-208ENST00000572270 DCUN1D5Q9BTE7 237 aa9.36□□□□□ -0.91
CCDC40-208ENST00000572270 ERVK13-1Q9NX77 482 aa9.36□□□□□ -0.91
CCDC40-208ENST00000572270 SMPD3Q9NY59 655 aaPredicted RBP9.36□□□□□ -0.91
CCDC40-208ENST00000572270 ETV7Q9Y603 341 aa9.36□□□□□ -0.91
CCDC40-208ENST00000572270 SRRM2Q9UQ35 2752 aaKnown RBP9.36□□□□□ -0.91
CCDC40-208ENST00000572270 TRAV8-7A0A075B6U6 113 aa9.35□□□□□ -0.91
CCDC40-208ENST00000572270 ZNF207O43670 478 aaKnown RBP9.35□□□□□ -0.91
CCDC40-208ENST00000572270 AREGP15514 252 aa9.35□□□□□ -0.91
CCDC40-208ENST00000572270 PSMD7P51665 324 aa9.35□□□□□ -0.91
CCDC40-208ENST00000572270 PAFAH1B2P68402 229 aa9.35□□□□□ -0.91
CCDC40-208ENST00000572270 CDH26Q8IXH8 852 aa9.35□□□□□ -0.91
CCDC40-208ENST00000572270 RNF2Q99496 336 aa9.35□□□□□ -0.91
CCDC40-208ENST00000572270 GABARAPL3Q9BY60 117 aa9.35□□□□□ -0.91
CCDC40-208ENST00000572270 GABARAPL1Q9H0R8 117 aa9.35□□□□□ -0.91
CCDC40-208ENST00000572270 PLEKHJ1Q9NW61 149 aa9.35□□□□□ -0.91
CCDC40-208ENST00000572270 GHRLQ9UBU3 117 aa9.35□□□□□ -0.91
CCDC40-208ENST00000572270 TBC1D24Q9ULP9 559 aa9.35□□□□□ -0.91
CCDC40-208ENST00000572270 X6R8D5 127 aa9.35□□□□□ -0.91
CCDC40-208ENST00000572270 IGLV11-55A0A075B6I3 123 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms