RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 WASHC3Q9Y3C0 194 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 TRAV1-1A0A0B4J248 108 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 A0A0G2JMM0 328 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 A0A1W2PPB8 328 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 A0A1W2PRS3 328 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 C17orf98A8MV24 154 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 KIR3DP1A8MWS1 328 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 B4E171 279 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 RAMP3O60896 148 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 IGHEP01854 428 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 GZMHP20718 246 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 CRYBB3P26998 211 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 EPHA8P29322 1005 aaPredicted RBP9.66□□□□□ -0.86
CLN3-238ENST00000569430 TSPAN7P41732 249 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 SMIM21Q3B7S5 101 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 SLC25A53Q5H9E4 307 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 C6orf15Q6UXA7 325 aaPredicted RBP9.66□□□□□ -0.86
CLN3-238ENST00000569430 GBGT1Q8N5D6 347 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 OR2D3Q8NGH3 330 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 C22orf15Q8WYQ4 148 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 MIEN1Q9BRT3 115 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 UQCR10Q9UDW1 63 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 TOX3O15405 576 aaPredicted RBP9.66□□□□□ -0.86
CLN3-238ENST00000569430 DLEU1O43261 78 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 PFN1P07737 140 aaKnown RBP9.66□□□□□ -0.86
CLN3-238ENST00000569430 CRYGSP22914 178 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 IL11RAQ14626 422 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 SSBP3Q9BWW4 388 aaPredicted RBP9.66□□□□□ -0.86
CLN3-238ENST00000569430 PHF7Q9BWX1 381 aaPredicted RBP9.66□□□□□ -0.86
CLN3-238ENST00000569430 COMMD5Q9GZQ3 224 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 ZNF835Q9Y2P0 537 aa9.66□□□□□ -0.86
CLN3-238ENST00000569430 TBL2Q9Y4P3 447 aaKnown RBP9.66□□□□□ -0.86
CLN3-238ENST00000569430 RIF1Q5UIP0 2472 aaKnown RBP9.66□□□□□ -0.86
CLN3-238ENST00000569430 MARCH11A6NNE9 402 aa9.65□□□□□ -0.86
CLN3-238ENST00000569430 PCOLCEQ15113 449 aa9.65□□□□□ -0.86
CLN3-238ENST00000569430 OR1C1Q15619 314 aa9.65□□□□□ -0.86
CLN3-238ENST00000569430 MDP1Q86V88 176 aa9.65□□□□□ -0.86
CLN3-238ENST00000569430 ZNF738Q8NE65 137 aa9.65□□□□□ -0.86
CLN3-238ENST00000569430 OR2Z1Q8NG97 314 aa9.65□□□□□ -0.86
CLN3-238ENST00000569430 BLNKQ8WV28 456 aa9.65□□□□□ -0.86
CLN3-238ENST00000569430 DCAF16Q9NXF7 216 aa9.65□□□□□ -0.86
CLN3-238ENST00000569430 MED13LQ71F56 2210 aa9.65□□□□□ -0.86
CLN3-238ENST00000569430 KLRC4-KLRK1H3BQV0 150 aa9.65□□□□□ -0.86
CLN3-238ENST00000569430 APCSP02743 223 aa9.65□□□□□ -0.86
CLN3-238ENST00000569430 TCTAP57738 103 aa9.65□□□□□ -0.86
CLN3-238ENST00000569430 UBE2L3P68036 154 aaKnown RBP9.65□□□□□ -0.86
CLN3-238ENST00000569430 RSPO1Q2MKA7 263 aaPredicted RBP9.65□□□□□ -0.86
CLN3-238ENST00000569430 C1orf194Q5T5A4 169 aa9.65□□□□□ -0.86
CLN3-238ENST00000569430 SPEM1Q8N4L4 309 aa9.65□□□□□ -0.86
CLN3-238ENST00000569430 SLC25A40Q8TBP6 338 aa9.65□□□□□ -0.86
CLN3-238ENST00000569430 SGK494Q96LW2 274 aa9.65□□□□□ -0.86
CLN3-238ENST00000569430 IL36GQ9NZH8 169 aa9.65□□□□□ -0.86
CLN3-238ENST00000569430 OOEPA6NGQ2 149 aa9.65□□□□□ -0.87
CLN3-238ENST00000569430 COX7A2P2O60397 106 aa9.65□□□□□ -0.87
CLN3-238ENST00000569430 IGKV1-5P01602 117 aa9.65□□□□□ -0.87
CLN3-238ENST00000569430 PAX9P55771 341 aa9.65□□□□□ -0.87
CLN3-238ENST00000569430 RIPPLY2Q5TAB7 128 aa9.65□□□□□ -0.87
CLN3-238ENST00000569430 TEPPQ6URK8 271 aa9.65□□□□□ -0.87
CLN3-238ENST00000569430 SCCPDHQ8NBX0 429 aa9.65□□□□□ -0.87
CLN3-238ENST00000569430 PRDM14Q9GZV8 571 aa9.65□□□□□ -0.87
CLN3-238ENST00000569430 CHRNA10Q9GZZ6 450 aa9.65□□□□□ -0.87
CLN3-238ENST00000569430 DEPPQ9NTK1 212 aa9.65□□□□□ -0.87
CLN3-238ENST00000569430 SSUH2Q9Y2M2 353 aa9.65□□□□□ -0.87
CLN3-238ENST00000569430 DNPH1O43598 174 aa9.64□□□□□ -0.87
CLN3-238ENST00000569430 MT-CO3P00414 261 aa9.64□□□□□ -0.87
CLN3-238ENST00000569430 NPY1RP25929 384 aa9.64□□□□□ -0.87
CLN3-238ENST00000569430 FOXG1P55316 489 aaPredicted RBP9.64□□□□□ -0.87
CLN3-238ENST00000569430 LRRC29Q8WV35 223 aa9.64□□□□□ -0.87
CLN3-238ENST00000569430 FAM173AQ9BQD7 235 aa9.64□□□□□ -0.87
CLN3-238ENST00000569430 REPIN1Q9BWE0 567 aaKnown RBP9.64□□□□□ -0.87
CLN3-238ENST00000569430 IGHV1-45A0A0A0MS14 117 aa9.64□□□□□ -0.87
CLN3-238ENST00000569430 FAM90A26D6RGX4 464 aa9.64□□□□□ -0.87
CLN3-238ENST00000569430 CD99P14209 185 aa9.64□□□□□ -0.87
CLN3-238ENST00000569430 SSTR5P35346 364 aa9.64□□□□□ -0.87
CLN3-238ENST00000569430 ZNF726P1Q15940 193 aa9.64□□□□□ -0.87
CLN3-238ENST00000569430 OCC1Q8TAD7 63 aa9.64□□□□□ -0.87
CLN3-238ENST00000569430 ST6GALNAC6Q969X2 333 aa9.64□□□□□ -0.87
CLN3-238ENST00000569430 PPIAL4AQ9Y536 164 aa9.64□□□□□ -0.87
CLN3-238ENST00000569430 SPTAN1Q13813 2472 aaKnown RBP9.64□□□□□ -0.87
CLN3-238ENST00000569430 TRAV24A0A0B4J272 114 aa9.64□□□□□ -0.87
CLN3-238ENST00000569430 WNT9BO14905 357 aa9.64□□□□□ -0.87
CLN3-238ENST00000569430 TFF1P04155 84 aa9.64□□□□□ -0.87
CLN3-238ENST00000569430 NPSP0C0P6 89 aa9.64□□□□□ -0.87
CLN3-238ENST00000569430 SOX8P57073 446 aa9.64□□□□□ -0.87
CLN3-238ENST00000569430 C20orf204Q6ZNR8 217 aa9.64□□□□□ -0.87
CLN3-238ENST00000569430 FADS6Q8N9I5 356 aa9.64□□□□□ -0.87
CLN3-238ENST00000569430 PLPPR1Q8TBJ4 325 aa9.64□□□□□ -0.87
CLN3-238ENST00000569430 NPVFQ9HCQ7 196 aa9.64□□□□□ -0.87
CLN3-238ENST00000569430 PRR14LQ5THK1 2151 aa9.64□□□□□ -0.87
CLN3-238ENST00000569430 RRHO14718 337 aa9.63□□□□□ -0.87
CLN3-238ENST00000569430 GALR2O43603 387 aaPredicted RBP9.63□□□□□ -0.87
CLN3-238ENST00000569430 S100A7P31151 101 aa9.63□□□□□ -0.87
CLN3-238ENST00000569430 PTGDSP41222 190 aa9.63□□□□□ -0.87
CLN3-238ENST00000569430 ZNF137PP52743 207 aa9.63□□□□□ -0.87
CLN3-238ENST00000569430 UCP2P55851 309 aa9.63□□□□□ -0.87
CLN3-238ENST00000569430 HES7Q9BYE0 225 aa9.63□□□□□ -0.87
CLN3-238ENST00000569430 LTBP2Q14767 1821 aa9.63□□□□□ -0.87
CLN3-238ENST00000569430 DPRXA6NFQ7 191 aa9.63□□□□□ -0.87
CLN3-238ENST00000569430 MKRN2OSH3BPM6 223 aa9.63□□□□□ -0.87
CLN3-238ENST00000569430 ZNF718Q3SXZ3 478 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms