RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 CD300LBA8K4G0 201 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 A8MWP4 228 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 EEF1E1-BLOC1S5C9J1V9 151 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 PPP5D1E7EU14 171 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 TSTD3H0UI37 97 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 K7EPK0 472 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 GPR31O00270 319 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 FAAHO00519 579 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 BHLHE40O14503 412 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 COPEO14579 308 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 EEF1E1O43324 174 aaKnown RBP0.78□□□□□ -2.28
VPS35-207ENST00000568191 TCF21O43680 179 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 COX7A2P2O60397 106 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 OR7C1O76099 320 aaPredicted RBP0.78□□□□□ -2.28
VPS35-207ENST00000568191 S1PR2O95136 353 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 SOD3P08294 240 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 CECR9P0C854 216 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 OR13C7P0DN81 318 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 OR12D1P0DN82 309 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 CGB3P0DN86 165 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 CGB7P0DN87 165 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 FAM236CP0DP71 79 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 HIST1H1TP22492 207 aaPredicted RBP0.78□□□□□ -2.28
VPS35-207ENST00000568191 ELK4P28324 431 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 IMPA1P29218 277 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 DDTP30046 118 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 MAP2K4P45985 399 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 MP68P56378 58 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 SNAP25P60880 206 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 RAB2AP61019 212 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 DAD1P61803 113 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 RPS24P62847 133 aaKnown RBP0.78□□□□□ -2.28
VPS35-207ENST00000568191 HLA-DRB3P79483 266 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 HPCAP84074 193 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 FABP5Q01469 135 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 TMEM267Q0VDI3 215 aaPredicted RBP0.78□□□□□ -2.28
VPS35-207ENST00000568191 PRDX4Q13162 271 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 APOFQ13790 326 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 PMAIP1Q13794 54 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 SMCO1Q147U7 214 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 TSNQ15631 228 aaKnown RBP0.78□□□□□ -2.28
VPS35-207ENST00000568191 SSX1Q16384 188 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 BATFQ16520 125 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 TMEM241Q24JQ0 296 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 MESTQ5EB52 335 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 CENPWQ5EE01 88 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 UBE2NLQ5JXB2 153 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 FAM201AQ5SY85 155 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 HENMT1Q5T8I9 393 aaKnown RBP0.78□□□□□ -2.28
VPS35-207ENST00000568191 FAM78BQ5VT40 261 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 NXNL2Q5VZ03 156 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 TEX36Q5VZQ5 186 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 LCN8Q6JVE9 175 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 LPCAT3Q6P1A2 487 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 ZNF773Q6PK81 442 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 Q6ZRU5 148 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 GRINAQ7Z429 371 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 ATP5L2Q7Z4Y8 100 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 FAM19A3Q7Z5A8 133 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 DOLPP1Q86YN1 238 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 ZNF567Q8N184 647 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 SLC35F6Q8N357 371 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 DEFB125Q8N687 156 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 UBL4BQ8N7F7 174 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 C12orf29Q8N999 325 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 TMEM35BQ8NCS4 154 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 OR52L1Q8NGH7 329 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 OR51A2Q8NGJ7 313 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 OR9I1Q8NGQ6 314 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 OR10K1Q8NGX5 313 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 OR10A6Q8NH74 314 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 OR13C6PQ8NH95 151 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 OR5K1Q8NHB7 308 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 OR10J5Q8NHC4 309 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 ZNRF2Q8NHG8 242 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 MCFD2Q8NI22 146 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 JOSD2Q8TAC2 188 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 TWIST2Q8WVJ9 160 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 BORCS7Q96B45 105 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 ZHX1-C8orf76Q96EF9 292 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 ACY3Q96HD9 319 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 DIRAS2Q96HU8 199 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 ANKRD36BP1Q96IX9 119 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 SLC35G5Q96KT7 338 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 YPEL4Q96NS1 127 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 OR7D2Q96RA2 312 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 OR52B2Q96RD2 323 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 OR52E6Q96RD3 313 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 TBX5Q99593 518 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 GINS3Q9BRX5 216 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 ZNF436Q9C0F3 470 aaPredicted RBP0.78□□□□□ -2.28
VPS35-207ENST00000568191 MIXL1Q9H2W2 232 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 BIN3Q9NQY0 253 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 CMTM6Q9NX76 183 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 MRPL27Q9P0M9 148 aaKnown RBP0.78□□□□□ -2.28
VPS35-207ENST00000568191 GINS2Q9Y248 185 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 ANGPT4Q9Y264 503 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 ERGIC3Q9Y282 383 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 PKIGQ9Y2B9 76 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 SLC35A3Q9Y2D2 325 aa0.78□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms