RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 OR8B12Q8NGG6 310 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 BTF3L4Q96K17 158 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 ALKBH3Q96Q83 286 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-216ENST00000552909 ALKBH7Q9BT30 221 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-216ENST00000552909 RNF150Q9ULK6 438 aa6.44□□□□□ -1.38
LIMA1-216ENST00000552909 ZANQ9Y493 2812 aa6.43□□□□□ -1.38
LIMA1-216ENST00000552909 TRAV39A0A0B4J263 110 aa6.43□□□□□ -1.38
LIMA1-216ENST00000552909 C3orf85A0A1B0GTC6 90 aa6.43□□□□□ -1.38
LIMA1-216ENST00000552909 RER1O15258 196 aa6.43□□□□□ -1.38
LIMA1-216ENST00000552909 NUPR1O60356 82 aa6.43□□□□□ -1.38
LIMA1-216ENST00000552909 CNOT4O95628 575 aaKnown RBP6.43□□□□□ -1.38
LIMA1-216ENST00000552909 HLA-HP01893 362 aa6.43□□□□□ -1.38
LIMA1-216ENST00000552909 MSR1P21757 451 aa6.43□□□□□ -1.38
LIMA1-216ENST00000552909 UCP3P55916 312 aa6.43□□□□□ -1.38
LIMA1-216ENST00000552909 UBE2V1Q13404 147 aa6.43□□□□□ -1.38
LIMA1-216ENST00000552909 MMDQ15546 238 aa6.43□□□□□ -1.38
LIMA1-216ENST00000552909 GABRA6Q16445 453 aa6.43□□□□□ -1.38
LIMA1-216ENST00000552909 CEACAM16Q2WEN9 425 aa6.43□□□□□ -1.38
LIMA1-216ENST00000552909 CXorf66Q5JRM2 361 aaPredicted RBP6.43□□□□□ -1.38
LIMA1-216ENST00000552909 Q6ZWC4 215 aa6.43□□□□□ -1.38
LIMA1-216ENST00000552909 DOK3Q7L591 496 aa6.43□□□□□ -1.38
LIMA1-216ENST00000552909 ZNF695Q8IW36 515 aa6.43□□□□□ -1.38
LIMA1-216ENST00000552909 OR1L6Q8NGR2 347 aa6.43□□□□□ -1.38
LIMA1-216ENST00000552909 SCGB1C1Q8TD33 95 aa6.43□□□□□ -1.38
LIMA1-216ENST00000552909 RPUSD4Q96CM3 377 aaKnown RBP6.43□□□□□ -1.38
LIMA1-216ENST00000552909 MANBALQ9NQG1 85 aa6.43□□□□□ -1.38
LIMA1-216ENST00000552909 ZNF581Q9P0T4 197 aa6.43□□□□□ -1.38
LIMA1-216ENST00000552909 LHFPL6Q9Y693 200 aa6.43□□□□□ -1.38
LIMA1-216ENST00000552909 DSCAMO60469 2012 aa6.43□□□□□ -1.38
LIMA1-216ENST00000552909 F8P00451 2351 aa6.43□□□□□ -1.38
LIMA1-216ENST00000552909 A0A1B0GUS0 222 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 DUXBA0A1W2PPF3 345 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 ADAM20O43506 726 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 ZNF737O75373 536 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 CD33P20138 364 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 DTYMKP23919 212 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 GCH1P30793 250 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 ZNF121P58317 390 aaPredicted RBP6.42□□□□□ -1.38
LIMA1-216ENST00000552909 RPL15P61313 204 aaKnown RBP6.42□□□□□ -1.38
LIMA1-216ENST00000552909 HERV-K104P61576 105 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 MEF2BQ02080 365 aaPredicted RBP6.42□□□□□ -1.38
LIMA1-216ENST00000552909 ZNF726P1Q15940 193 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 DMRTC1Q5HYR2 192 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 OR8G2PQ6IF36 304 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 VN1R17PQ8TDU5 208 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 NABP1Q96AH0 204 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 PLPPR2Q96GM1 343 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 TMEM222Q9H0R3 208 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 ZNF286AQ9HBT8 521 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 UBE2J1Q9Y385 318 aaPredicted RBP6.42□□□□□ -1.38
LIMA1-216ENST00000552909 MTORP42345 2549 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 FLNAP21333 2647 aaKnown RBP6.42□□□□□ -1.38
LIMA1-216ENST00000552909 DPRXA6NFQ7 191 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 TMEM250H0YL14 139 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 MPPED1O15442 326 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 CHST1O43916 411 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 TMEM50AO95807 157 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 GYPAP02724 150 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 PPBPP02775 128 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 CCL1P22362 96 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 IL3RAP26951 378 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 TIMM23BQ5SRD1 257 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 FAM27BQ5VT28 67 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 STPG4Q8N801 248 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 WDR31Q8NA23 367 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 SLC24A4Q8NFF2 622 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 OR4B1Q8NGF8 309 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 OR2D3Q8NGH3 330 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 FOXB1Q99853 325 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 RSG1Q9BU20 258 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 VSIRQ9H7M9 311 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 TMEM38BQ9NVV0 291 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 ZNF319Q9P2F9 582 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 WIPI2Q9Y4P8 454 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 PXMP4Q9Y6I8 212 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 SVEP1Q4LDE5 3571 aa6.42□□□□□ -1.38
LIMA1-216ENST00000552909 A0A096LPE4 126 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 A0A0U1RQK1 487 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 A0A1W2PPZ6 126 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 ZNF320A2RRD8 509 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 CBY3A6NI87 242 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 SLC33A1O00400 549 aaPredicted RBP6.41□□□□□ -1.38
LIMA1-216ENST00000552909 TNFSF12O43508 249 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 TOMM40O96008 361 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 PATE4P0C8F1 98 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 B4GALT1P15291 398 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 CDKN1AP38936 164 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 MDH2P40926 338 aaKnown RBP6.41□□□□□ -1.38
LIMA1-216ENST00000552909 ARF1P84077 181 aaKnown RBP6.41□□□□□ -1.38
LIMA1-216ENST00000552909 ID3Q02535 119 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 FAM78BQ5VT40 261 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 FOXL2NBQ6ZUU3 175 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 LYG1Q8N1E2 194 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 GJC3Q8NFK1 279 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 NEUROG1Q92886 237 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 Q96M66 194 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 TMEM56Q96MV1 263 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 HSPB9Q9BQS6 159 aa6.41□□□□□ -1.38
LIMA1-216ENST00000552909 PSMG3Q9BT73 122 aaPredicted RBP6.41□□□□□ -1.38
LIMA1-216ENST00000552909 LINC00470Q9BZP3 86 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms