RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 IDI2-AS1Q9NZ38 188 aa8.17□□□□□ -1.1
SS18-205ENST00000542420 VAX2Q9UIW0 290 aa8.17□□□□□ -1.1
SS18-205ENST00000542420 COL6A3P12111 3177 aa8.17□□□□□ -1.1
SS18-205ENST00000542420 NXPH3O95157 252 aa8.17□□□□□ -1.1
SS18-205ENST00000542420 SNRPCP09234 159 aaKnown RBP8.17□□□□□ -1.1
SS18-205ENST00000542420 CCL20P78556 96 aa8.17□□□□□ -1.1
SS18-205ENST00000542420 EDDM3AQ14507 147 aa8.17□□□□□ -1.1
SS18-205ENST00000542420 ADAM5Q6NVV9 412 aa8.17□□□□□ -1.1
SS18-205ENST00000542420 C1orf87Q8N0U7 546 aa8.17□□□□□ -1.1
SS18-205ENST00000542420 ZNF439Q8NDP4 499 aa8.17□□□□□ -1.1
SS18-205ENST00000542420 RAB1CQ92928 201 aa8.17□□□□□ -1.1
SS18-205ENST00000542420 RCC1LQ96I51 464 aaKnown RBP8.17□□□□□ -1.1
SS18-205ENST00000542420 GAFA1Q96PS6 74 aa8.17□□□□□ -1.1
SS18-205ENST00000542420 NIPSNAP3BQ9BS92 247 aa8.17□□□□□ -1.1
SS18-205ENST00000542420 MANBALQ9NQG1 85 aa8.17□□□□□ -1.1
SS18-205ENST00000542420 A0A0G2JNJ9 132 aa8.16□□□□□ -1.1
SS18-205ENST00000542420 IGHV3-64DA0A0J9YX35 117 aa8.16□□□□□ -1.1
SS18-205ENST00000542420 hADV38S2A0JD32 116 aa8.16□□□□□ -1.1
SS18-205ENST00000542420 M0R036 132 aa8.16□□□□□ -1.1
SS18-205ENST00000542420 TGOLN2O43493 480 aa8.16□□□□□ -1.1
SS18-205ENST00000542420 SPRY3O43610 288 aa8.16□□□□□ -1.1
SS18-205ENST00000542420 CCKARP32238 428 aa8.16□□□□□ -1.1
SS18-205ENST00000542420 DLK1P80370 383 aa8.16□□□□□ -1.1
SS18-205ENST00000542420 NCR3LG1Q68D85 454 aa8.16□□□□□ -1.1
SS18-205ENST00000542420 RPRMLQ8N4K4 120 aa8.16□□□□□ -1.1
SS18-205ENST00000542420 RSG1Q9BU20 258 aa8.16□□□□□ -1.1
SS18-205ENST00000542420 PRO1933Q9H354 126 aa8.16□□□□□ -1.1
SS18-205ENST00000542420 Q9UFV3 132 aa8.16□□□□□ -1.1
SS18-205ENST00000542420 LINC00312Q9Y6C7 94 aa8.16□□□□□ -1.1
SS18-205ENST00000542420 CEBPZOSA8MTT3 80 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 K7ENP7 123 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 M0R1X1 148 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 PROP1O75360 226 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 FSTL3O95633 263 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 SNRNP70P08621 437 aaKnown RBP8.15□□□□□ -1.1
SS18-205ENST00000542420 PRAMEF5Q5TYX0 476 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 ASCL5Q7RTU5 278 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 FAM24BQ8N5W8 94 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 ZNF709Q8N972 641 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 OR4A16Q8NH70 328 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 RAB39BQ96DA2 213 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 ABHD17AQ96GS6 310 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 RARRES2Q99969 163 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 TXNDC17Q9BRA2 123 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 ACTR3CQ9C0K3 210 aaPredicted RBP8.15□□□□□ -1.1
SS18-205ENST00000542420 DOK5Q9P104 306 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 FOXA2Q9Y261 457 aaPredicted RBP8.15□□□□□ -1.1
SS18-205ENST00000542420 WDR83OSQ9Y284 106 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 CACNA1DQ01668 2161 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 IGHV3-43A0A0B4J1X8 118 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 TRAV38-1A0A0B4J264 116 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 UBE2L5PA0A1B0GUS4 154 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 MAP1LC3B2A6NCE7 125 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 C17orf100A8MU93 164 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 A8MWP6 167 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 SEC14L6B5MCN3 397 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 TMEM250H0YL14 139 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 H3BQ15 152 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 EREGO14944 169 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 HRASP01112 189 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 OR13C7P0DN81 318 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 IGHV3-43DP0DP04 118 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 DAOP14920 347 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 RAB4AP20338 218 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 VDAC2P45880 294 aaPredicted RBP8.15□□□□□ -1.1
SS18-205ENST00000542420 CD81P60033 236 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 FAM27E3Q08E93 113 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 ACOT6Q3I5F7 207 aaPredicted RBP8.15□□□□□ -1.1
SS18-205ENST00000542420 BTNL3Q6UXE8 466 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 HEPN1Q6WQI6 88 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 SPNS3Q6ZMD2 512 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 TPRX1Q8N7U7 411 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 OR10D4PQ8NGN7 298 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 RFESDQ8TAC1 157 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 LRFN3Q9BTN0 628 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 MAP1LC3BQ9GZQ8 125 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 GAL3ST2Q9H3Q3 398 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 SLC39A9Q9NUM3 307 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 ZNF257Q9Y2Q1 563 aa8.15□□□□□ -1.1
SS18-205ENST00000542420 TTC28Q96AY4 2481 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 SMCO3A2RU48 225 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 C15orf61A6NNL5 157 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 C15orf62A8K5M9 175 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 TSTD3H0UI37 97 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 K7EM74 188 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 CYB5BO43169 146 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 FCGR3BO75015 233 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 S100A2P29034 98 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 UCNP55089 124 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 RAB11AP62491 216 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 RELBQ01201 579 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 ZNF726P1Q15940 193 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 TBR1Q16650 682 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 GFRALQ6UXV0 394 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 SLC25A48Q6ZT89 311 aaKnown RBP8.14□□□□□ -1.11
SS18-205ENST00000542420 Q8NA96 180 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 ZNF596Q8TC21 504 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 NDUFAF3Q9BU61 184 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 CTDSP1Q9GZU7 261 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 RPUSD1Q9UJJ7 312 aaKnown RBP8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms