RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 SERPINE2P07093 398 aa8.04□□□□□ -1.12
CLIP1-212ENST00000540304 CA7P43166 264 aa8.04□□□□□ -1.12
CLIP1-212ENST00000540304 RIPPLY3P57055 190 aa8.04□□□□□ -1.12
CLIP1-212ENST00000540304 ERVFC1-1P60608 527 aa8.04□□□□□ -1.12
CLIP1-212ENST00000540304 EDDM3AQ14507 147 aa8.04□□□□□ -1.12
CLIP1-212ENST00000540304 ADIPOQQ15848 244 aa8.04□□□□□ -1.12
CLIP1-212ENST00000540304 C1QL4Q86Z23 238 aa8.04□□□□□ -1.12
CLIP1-212ENST00000540304 TPRX1Q8N7U7 411 aa8.04□□□□□ -1.12
CLIP1-212ENST00000540304 CLEC18CQ8NCF0 446 aa8.04□□□□□ -1.12
CLIP1-212ENST00000540304 OR13A1Q8NGR1 328 aa8.04□□□□□ -1.12
CLIP1-212ENST00000540304 ZCCHC14Q8WYQ9 949 aaKnown RBP8.04□□□□□ -1.12
CLIP1-212ENST00000540304 NINJ1Q92982 152 aa8.04□□□□□ -1.12
CLIP1-212ENST00000540304 SMIM8Q96KF7 97 aa8.04□□□□□ -1.12
CLIP1-212ENST00000540304 NGBQ9NPG2 151 aa8.04□□□□□ -1.12
CLIP1-212ENST00000540304 LIN7CQ9NUP9 197 aaKnown RBP8.04□□□□□ -1.12
CLIP1-212ENST00000540304 RNF7Q9UBF6 113 aa8.04□□□□□ -1.12
CLIP1-212ENST00000540304 NXPH3O95157 252 aa8.04□□□□□ -1.12
CLIP1-212ENST00000540304 CRYGCP07315 174 aa8.04□□□□□ -1.12
CLIP1-212ENST00000540304 OR4A8P0C604 315 aa8.04□□□□□ -1.12
CLIP1-212ENST00000540304 SSTR5P35346 364 aa8.04□□□□□ -1.12
CLIP1-212ENST00000540304 ASCL1P50553 236 aa8.04□□□□□ -1.12
CLIP1-212ENST00000540304 CEBPGP53567 150 aa8.04□□□□□ -1.12
CLIP1-212ENST00000540304 EIF5AP63241 154 aaKnown RBP8.04□□□□□ -1.12
CLIP1-212ENST00000540304 DRAM1Q8N682 238 aa8.04□□□□□ -1.12
CLIP1-212ENST00000540304 OR52L2PQ8NGH6 319 aa8.04□□□□□ -1.12
CLIP1-212ENST00000540304 Q8TCH9 128 aa8.04□□□□□ -1.12
CLIP1-212ENST00000540304 FAM222BQ8WU58 562 aa8.04□□□□□ -1.12
CLIP1-212ENST00000540304 ABHD14BQ96IU4 210 aa8.04□□□□□ -1.12
CLIP1-212ENST00000540304 PCGF1Q9BSM1 259 aa8.04□□□□□ -1.12
CLIP1-212ENST00000540304 ODAMA1E959 279 aa8.03□□□□□ -1.12
CLIP1-212ENST00000540304 RNF212BA8MTL3 300 aa8.03□□□□□ -1.12
CLIP1-212ENST00000540304 SPINT2O43291 252 aa8.03□□□□□ -1.12
CLIP1-212ENST00000540304 CD80P33681 288 aa8.03□□□□□ -1.12
CLIP1-212ENST00000540304 NKX2-1P43699 371 aaPredicted RBP8.03□□□□□ -1.12
CLIP1-212ENST00000540304 P2RY1P47900 373 aa8.03□□□□□ -1.12
CLIP1-212ENST00000540304 RAB7AP51149 207 aa8.03□□□□□ -1.12
CLIP1-212ENST00000540304 GNMTQ14749 295 aa8.03□□□□□ -1.12
CLIP1-212ENST00000540304 ZNF645Q8N7E2 425 aa8.03□□□□□ -1.12
CLIP1-212ENST00000540304 ZBTB34Q8NCN2 500 aa8.03□□□□□ -1.12
CLIP1-212ENST00000540304 ARL11Q969Q4 196 aa8.03□□□□□ -1.12
CLIP1-212ENST00000540304 PLEKHF2Q9H8W4 249 aa8.03□□□□□ -1.12
CLIP1-212ENST00000540304 HIF1ANQ9NWT6 349 aa8.03□□□□□ -1.12
CLIP1-212ENST00000540304 RCL1Q9Y2P8 373 aaKnown RBP8.03□□□□□ -1.12
CLIP1-212ENST00000540304 USF3Q68DE3 2245 aa8.03□□□□□ -1.12
CLIP1-212ENST00000540304 TPRP12270 2363 aaKnown RBP8.03□□□□□ -1.12
CLIP1-212ENST00000540304 C15orf65H3BRN8 121 aa8.03□□□□□ -1.12
CLIP1-212ENST00000540304 K7N7A8 449 aa8.03□□□□□ -1.12
CLIP1-212ENST00000540304 GPR137BO60478 399 aa8.03□□□□□ -1.12
CLIP1-212ENST00000540304 CD55P08174 381 aa8.03□□□□□ -1.12
CLIP1-212ENST00000540304 ADH4P08319 380 aa8.03□□□□□ -1.12
CLIP1-212ENST00000540304 RPS10P46783 165 aaKnown RBP8.03□□□□□ -1.12
CLIP1-212ENST00000540304 GPR157Q5UAW9 335 aa8.03□□□□□ -1.12
CLIP1-212ENST00000540304 TEX38Q6PEX7 206 aa8.03□□□□□ -1.12
CLIP1-212ENST00000540304 OR2D2Q9H210 308 aa8.03□□□□□ -1.12
CLIP1-212ENST00000540304 OR2S2Q9NQN1 319 aa8.03□□□□□ -1.12
CLIP1-212ENST00000540304 FBXL17Q9UF56 701 aa8.03□□□□□ -1.12
CLIP1-212ENST00000540304 C17orf100A8MU93 164 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 GAPDHP04406 335 aaKnown RBP8.02□□□□□ -1.13
CLIP1-212ENST00000540304 SLC25A6P12236 298 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 CHRNB4P30926 498 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 PPP1CCP36873 323 aaKnown RBP8.02□□□□□ -1.13
CLIP1-212ENST00000540304 MSMO1Q15800 293 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 GUK1Q16774 197 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 HAGHQ16775 308 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 CR1LQ2VPA4 569 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 ZNF705AQ6ZN79 300 aaPredicted RBP8.02□□□□□ -1.13
CLIP1-212ENST00000540304 ZNRF1Q8ND25 227 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 OR2D3Q8NGH3 330 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 HIST1H2BLQ99880 126 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 DCTN5Q9BTE1 182 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 DCHS2Q6V1P9 2916 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 ELOA3CA0A087WX78 387 aaPredicted RBP8.02□□□□□ -1.13
CLIP1-212ENST00000540304 A0A0U1RQK1 487 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 ZNF320A2RRD8 509 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 HIST1H2BKO60814 126 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 HIST1H2BJP06899 126 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 C1QTNF9P0C862 333 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 TNFRSF1AP19438 455 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 HIST1H2BOP23527 126 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 HIST1H2BBP33778 126 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 CRYBA4P53673 196 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 HIST1H2BDP58876 126 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 HIST1H2BCP62807 126 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 HIST2H2BEQ16778 126 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.02□□□□□ -1.13
CLIP1-212ENST00000540304 FAM201AQ5SY85 155 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 LDLRAD2Q5SZI1 272 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 STUMQ69YW2 141 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 RPL7L1Q6DKI1 246 aaKnown RBP8.02□□□□□ -1.13
CLIP1-212ENST00000540304 TMED6Q8WW62 240 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 HIST1H2BHQ93079 126 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 LSM10Q969L4 123 aaKnown RBP8.02□□□□□ -1.13
CLIP1-212ENST00000540304 SDSLQ96GA7 329 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 ATP6V0BQ99437 205 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 HIST1H2BNQ99877 126 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 HIST1H2BMQ99879 126 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 SMIM3Q9BZL3 60 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 C11orf1Q9H5F2 150 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 RNF150Q9ULK6 438 aa8.02□□□□□ -1.13
CLIP1-212ENST00000540304 RAI1Q7Z5J4 1906 aaPredicted RBP8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms