RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 STAG3L2P0CL84 134 aa10.45□□□□□ -0.74
USP3-203ENST00000538686 OR2T6Q8NHC8 308 aa10.45□□□□□ -0.74
USP3-203ENST00000538686 CT55Q8WUE5 264 aa10.45□□□□□ -0.74
USP3-203ENST00000538686 CHCHD1Q96BP2 118 aaKnown RBP10.45□□□□□ -0.74
USP3-203ENST00000538686 LYZL4Q96KX0 146 aa10.45□□□□□ -0.74
USP3-203ENST00000538686 WDR54Q9H977 334 aa10.45□□□□□ -0.74
USP3-203ENST00000538686 CCL28Q9NRJ3 127 aa10.45□□□□□ -0.74
USP3-203ENST00000538686 CRIM1Q9NZV1 1036 aa10.45□□□□□ -0.74
USP3-203ENST00000538686 C2orf72A6NCS6 295 aa10.44□□□□□ -0.74
USP3-203ENST00000538686 CLDN1O95832 211 aa10.44□□□□□ -0.74
USP3-203ENST00000538686 HNRNPA1P09651 372 aaKnown RBP eCLIP10.44□□□□□ -0.74
USP3-203ENST00000538686 CD38P28907 300 aa10.44□□□□□ -0.74
USP3-203ENST00000538686 BRICD5Q6PL45 260 aa10.44□□□□□ -0.74
USP3-203ENST00000538686 SLC25A47Q6Q0C1 308 aa10.44□□□□□ -0.74
USP3-203ENST00000538686 ZNF841Q6ZN19 808 aa10.44□□□□□ -0.74
USP3-203ENST00000538686 C2orf91Q6ZV80 131 aa10.44□□□□□ -0.74
USP3-203ENST00000538686 TSTD1Q8NFU3 115 aa10.44□□□□□ -0.74
USP3-203ENST00000538686 FLVCR1-AS1Q8TAF5 88 aa10.44□□□□□ -0.74
USP3-203ENST00000538686 ZNF391Q9UJN7 358 aa10.44□□□□□ -0.74
USP3-203ENST00000538686 THADAQ6YHU6 1953 aa10.44□□□□□ -0.74
USP3-203ENST00000538686 FAM90A10PA6NDY2 464 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 FAM90A18PA6NE21 464 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 FAM90A16PA6NEW6 464 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 FAM90A20PA6NIJ5 464 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 FAM90A8PA6NJQ4 464 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 FAM90A7PA6NKC0 464 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 LRRC30A6NM36 301 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 FAM90A22PA8MWA6 464 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 FAM90A12PA8MX19 464 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 FAM90A5PA8MXJ8 464 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 FAM90A23PA8MXZ1 464 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 OR2J3O76001 311 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 FAM90A15PP0C7V4 464 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 FAM90A13PP0C7W8 464 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 FAM90A14PP0C7W9 464 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 FAM90A24PP0C7X0 464 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 KIR3DS1Q14943 382 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 Q6ZRM9 215 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 ELSPBP1Q96BH3 223 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 MS4A5Q9H3V2 200 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 PRTFDC1Q9NRG1 225 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 SHANK1Q9Y566 2161 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 IGKV1D-13A0A0B4J2D9 117 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 FRG2CA6NGY1 282 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 F8W1H4 67 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 CLEC3BP05452 202 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 IGKV1-13P0DP09 117 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 PSG2P11465 335 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 CLRN1P58418 232 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 RPL31P62899 125 aaKnown RBP10.43□□□□□ -0.74
USP3-203ENST00000538686 CCL7P80098 99 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 TIMM23BQ5SRD1 257 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 LY6G5CQ5SRR4 150 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 SHISA6Q6ZSJ9 500 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 SPACA3Q8IXA5 215 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 TPRX1Q8N7U7 411 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 OR4A16Q8NH70 328 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 FAM131CQ96AQ9 280 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 GRAMD2BQ96HH9 432 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 GPR82Q96P67 336 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 MAP1LC3CQ9BXW4 147 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 SIGLEC8Q9NYZ4 499 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 HCSTQ9UBK5 93 aa10.43□□□□□ -0.74
USP3-203ENST00000538686 MPDU1O75352 247 aa10.42□□□□□ -0.74
USP3-203ENST00000538686 LEPROTL1O95214 131 aa10.42□□□□□ -0.74
USP3-203ENST00000538686 AREGP15514 252 aa10.42□□□□□ -0.74
USP3-203ENST00000538686 ZNF16P17020 682 aaPredicted RBP10.42□□□□□ -0.74
USP3-203ENST00000538686 MEF2CQ06413 473 aaPredicted RBP10.42□□□□□ -0.74
USP3-203ENST00000538686 ZNF718Q3SXZ3 478 aa10.42□□□□□ -0.74
USP3-203ENST00000538686 SLC35E4Q6ICL7 350 aa10.42□□□□□ -0.74
USP3-203ENST00000538686 HCFC1R1Q9NWW0 138 aa10.42□□□□□ -0.74
USP3-203ENST00000538686 MED29Q9NX70 200 aa10.42□□□□□ -0.74
USP3-203ENST00000538686 ARID1BQ8NFD5 2236 aaPredicted RBP10.42□□□□□ -0.74
USP3-203ENST00000538686 SPAARA0A1B0GVQ0 90 aa10.42□□□□□ -0.74
USP3-203ENST00000538686 RER1O15258 196 aa10.42□□□□□ -0.74
USP3-203ENST00000538686 SIVA1O15304 175 aa10.42□□□□□ -0.74
USP3-203ENST00000538686 OR7C1O76099 320 aaPredicted RBP10.42□□□□□ -0.74
USP3-203ENST00000538686 FKBP1BP68106 108 aa10.42□□□□□ -0.74
USP3-203ENST00000538686 PIGYQ3MUY2 71 aa10.42□□□□□ -0.74
USP3-203ENST00000538686 ZNF645Q8N7E2 425 aa10.42□□□□□ -0.74
USP3-203ENST00000538686 OR9G4Q8NGQ1 327 aa10.42□□□□□ -0.74
USP3-203ENST00000538686 LIN7CQ9NUP9 197 aaKnown RBP10.42□□□□□ -0.74
USP3-203ENST00000538686 TP73-AS1Q9UF72 201 aa10.42□□□□□ -0.74
USP3-203ENST00000538686 ERG28Q9UKR5 140 aa10.42□□□□□ -0.74
USP3-203ENST00000538686 SLC17A4Q9Y2C5 497 aa10.42□□□□□ -0.74
USP3-203ENST00000538686 TRBV7-9A0A0J9YWB2 115 aa10.41□□□□□ -0.74
USP3-203ENST00000538686 TGFBR3LH3BV60 316 aa10.41□□□□□ -0.74
USP3-203ENST00000538686 SPRY1O43609 319 aaPredicted RBP10.41□□□□□ -0.74
USP3-203ENST00000538686 LIPFP07098 398 aa10.41□□□□□ -0.74
USP3-203ENST00000538686 IL12BP29460 328 aa10.41□□□□□ -0.74
USP3-203ENST00000538686 RBM11P57052 281 aaKnown RBP10.41□□□□□ -0.74
USP3-203ENST00000538686 TFF3Q07654 80 aa10.41□□□□□ -0.74
USP3-203ENST00000538686 AESQ08117 197 aa10.41□□□□□ -0.74
USP3-203ENST00000538686 CEACAM21Q3KPI0 293 aa10.41□□□□□ -0.74
USP3-203ENST00000538686 FAM69BQ5VUD6 431 aa10.41□□□□□ -0.74
USP3-203ENST00000538686 INO80CQ6PI98 192 aaPredicted RBP10.41□□□□□ -0.74
USP3-203ENST00000538686 Q6ZPA2 131 aa10.41□□□□□ -0.74
USP3-203ENST00000538686 ZDHHC23Q8IYP9 409 aa10.41□□□□□ -0.74
USP3-203ENST00000538686 SHISA5Q8N114 240 aa10.41□□□□□ -0.74
USP3-203ENST00000538686 BAHD1Q8TBE0 780 aaPredicted RBP10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms