RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 TRAPPC1Q9Y5R8 145 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 PXMP4Q9Y6I8 212 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 ZNF780BQ9Y6R6 833 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 V9GY05 133 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 NUP214P35658 2090 aaPredicted RBP2.03□□□□□ -2.08
SKA3-207ENST00000536239 TNRC6AQ8NDV7 1962 aaKnown RBP2.03□□□□□ -2.08
SKA3-207ENST00000536239 XIRP1Q702N8 1843 aaKnown RBP2.03□□□□□ -2.08
SKA3-207ENST00000536239 IGKV6D-21A0A0A0MT36 114 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 CENPVL3A0A0U1RRI6 287 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 KIR2DS1A0A191URI9 304 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 SPAARA0A1B0GVQ0 90 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 A0A1W2PRE2 83 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 DAPL1A0PJW8 107 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 C7orf71A4D174 169 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 MBLAC1A4D2B0 266 aaPredicted RBP2.03□□□□□ -2.08
SKA3-207ENST00000536239 OOEPA6NGQ2 149 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 MSGN1A6NI15 193 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 GLOD5A6NK44 160 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 TMEM212A6NML5 194 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 FABP5P3A8MUU1 101 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 PRR32B1ATL7 298 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 C21orf140B9A014 251 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 USP17L23D6RBM5 183 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 F8W1H4 67 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 TMEM250H0YL14 139 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 C15orf65H3BRN8 121 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 H7C1C5 153 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 M0R2Z0 102 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 SAP18O00422 153 aaKnown RBP2.03□□□□□ -2.08
SKA3-207ENST00000536239 CDC42EP2O14613 210 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 GPR137BO60478 399 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 GCM2O75603 506 aaPredicted RBP2.03□□□□□ -2.08
SKA3-207ENST00000536239 MPZL1O95297 269 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 SOX14O95416 240 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 SLC2A10O95528 541 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 ETHE1O95571 254 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 KRASP01116 189 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 CD3DP04234 171 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 GPX1P07203 203 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 SPINK8P0C7L1 97 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 HIST1H1DP16402 221 aaKnown RBP2.03□□□□□ -2.08
SKA3-207ENST00000536239 ZNF43P17038 809 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 PGCP20142 388 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 EDN2P20800 178 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 EVI2AP22794 236 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 HTR1DP28221 377 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 PRDX3P30048 256 aaKnown RBP2.03□□□□□ -2.08
SKA3-207ENST00000536239 TIA1P31483 386 aaKnown RBP eCLIP2.03□□□□□ -2.08
SKA3-207ENST00000536239 DRD3P35462 400 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 ZNF93P35789 620 aaPredicted RBP2.03□□□□□ -2.08
SKA3-207ENST00000536239 CFHR2P36980 270 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 APOBEC1P41238 236 aaKnown RBP2.03□□□□□ -2.08
SKA3-207ENST00000536239 CCR2P41597 374 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 NSG1P42857 185 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 OR1E2P47887 323 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 PAX9P55771 341 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 TAS2R46P59540 309 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 RHOBP62745 196 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 GRB2P62993 217 aaKnown RBP2.03□□□□□ -2.08
SKA3-207ENST00000536239 MFAP5Q13361 173 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 PPP1R1AQ13522 171 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 GGTLC2Q14390 218 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 KIR2DS1Q14954 304 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 CDK5R1Q15078 307 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 LRRC75BQ2VPJ9 315 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 HLA-BQ31612 363 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 DCAF4L1Q3SXM0 396 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 ACSF3Q4G176 576 aaPredicted RBP2.03□□□□□ -2.08
SKA3-207ENST00000536239 ZNF766Q5HY98 468 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 VAX1Q5SQQ9 334 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 FAM162BQ5T6X4 162 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 FAM27D1Q5T7N8 215 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 SPATA31B1PQ5VZV4 182 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 ZFAND6Q6FIF0 208 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 ASPHD2Q6ICH7 369 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 RHBDD2Q6NTF9 364 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 RNASEKQ6P5S7 137 aaKnown RBP2.03□□□□□ -2.08
SKA3-207ENST00000536239 TRIM40Q6P9F5 258 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 ZNF880Q6PDB4 577 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 TMEM207Q6UWW9 146 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 Q6ZR54 194 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 CYP2G1PQ6ZSU1 146 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 PAQR9Q6ZVX9 377 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 ERASQ7Z444 233 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 LRP11Q86VZ4 500 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 ZNF547Q8IVP9 402 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 SGPP2Q8IWX5 399 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 CA13Q8N1Q1 262 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 SYS1Q8N2H4 156 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 TMEM256Q8N2U0 113 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 RYBPQ8N488 228 aaPredicted RBP2.03□□□□□ -2.08
SKA3-207ENST00000536239 KRTCAP2Q8N6L1 136 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 CYB561D1Q8N8Q1 229 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 CDRT4Q8N9R6 151 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 ZNF436-AS1Q8NC38 126 aaPredicted RBP2.03□□□□□ -2.08
SKA3-207ENST00000536239 OR10G9Q8NGN4 311 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 OR5H2Q8NGV7 314 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 OR6N2Q8NGY6 317 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 OR2G3Q8NGZ4 309 aa2.03□□□□□ -2.08
SKA3-207ENST00000536239 OR4F5Q8NH21 305 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms