RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 OPN1MW2P0DN77 364 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 OPN1MW3P0DN78 364 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 GLRA1P23415 457 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 LMO1P25800 156 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 GPM6AP51674 278 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 CLDN12P56749 244 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 TAS2R46P59540 309 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 SRSF3P84103 164 aaKnown RBP6.57□□□□□ -1.36
SCN1A-207ENST00000507401 TNFRSF9Q07011 255 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 ATXN7L3Q14CW9 347 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-207ENST00000507401 IQCJQ1A5X6 159 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 LRRC37A5PQ49AS3 106 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 SCGB2B2Q4G0G5 96 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 ZNF573Q86YE8 665 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 TMEM183AQ8IXX5 376 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 FAM216BQ8N7L0 139 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 OR51D1Q8NGF3 324 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 SSMEM1Q8WWF3 244 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 DYRK2Q92630 601 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 EMG1Q92979 244 aaKnown RBP6.57□□□□□ -1.36
SCN1A-207ENST00000507401 LHX4Q969G2 390 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 PPP1R14AQ96A00 147 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 SDSLQ96GA7 329 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 ABHD14BQ96IU4 210 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 SEC22AQ96IW7 307 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 PACRGQ96M98 296 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-207ENST00000507401 DUX5Q96PT3 197 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 GINS3Q9BRX5 216 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 NIPSNAP3BQ9BS92 247 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 EIF5A2Q9GZV4 153 aaKnown RBP6.57□□□□□ -1.36
SCN1A-207ENST00000507401 FGF23Q9GZV9 251 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-207ENST00000507401 MRM2Q9UI43 246 aaKnown RBP6.57□□□□□ -1.36
SCN1A-207ENST00000507401 NSG2Q9Y328 171 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 hCG_1809904A0A1W2PP81 198 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 A0A1W2PR64 198 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 A0A1W2PRV1 198 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 M0R1W7 72 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 RHBDL1O75783 438 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 NDUFA7O95182 113 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 ISG15P05161 165 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 PSG2P11465 335 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 CCL1P22362 96 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 RPL12P30050 165 aaKnown RBP6.56□□□□□ -1.36
SCN1A-207ENST00000507401 TAGLN2P37802 199 aaKnown RBP6.56□□□□□ -1.36
SCN1A-207ENST00000507401 IER3P46695 156 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 P2RY1P47900 373 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 GLIPR1P48060 266 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 CAMLGP49069 296 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 RND2P52198 227 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 NDUFA6P56556 154 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 NANOS3P60323 173 aaKnown RBP6.56□□□□□ -1.36
SCN1A-207ENST00000507401 IL15RAQ13261 267 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 ZNF266Q14584 549 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 ZNF674Q2M3X9 581 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 PRR31Q5SQ13 230 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 VMO1Q7Z5L0 202 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 COMMD2Q86X83 199 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 TGIF2LXQ8IUE1 241 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 POC1AQ8NBT0 407 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 SECTM1Q8WVN6 248 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 TSEN15Q8WW01 171 aaKnown RBP6.56□□□□□ -1.36
SCN1A-207ENST00000507401 TVP23CQ96ET8 276 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 CPNE2Q96FN4 548 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-207ENST00000507401 GAFA1Q96PS6 74 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 TMEM231Q9H6L2 316 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 METTL8Q9H825 291 aaKnown RBP6.56□□□□□ -1.36
SCN1A-207ENST00000507401 OR5AC2Q9NZP5 309 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 KIAA1456Q9P272 454 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 SLC25A10Q9UBX3 287 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-207ENST00000507401 DHDHQ9UQ10 334 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 GOLT1BQ9Y3E0 138 aa6.56□□□□□ -1.36
SCN1A-207ENST00000507401 IGKV1D-17A0A075B6S4 117 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 C13orf42A0A1B0GVH6 325 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 MDFIC2A0A1B0GVS7 189 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 J3QT63 122 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 HSPA12AO43301 675 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 SPRY1O43609 319 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-207ENST00000507401 HIST1H2BKO60814 126 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 YIF1AO95070 293 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 MBPP02686 304 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-207ENST00000507401 TK1P04183 234 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 HIST1H2BJP06899 126 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 PGA5P0DJD9 388 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 FAHP16930 419 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 NDUFB7P17568 137 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 IGFBP3P17936 291 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-207ENST00000507401 HIST1H2BOP23527 126 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 PRDX2P32119 198 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 HIST1H2BBP33778 126 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 GABRA2P47869 451 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 PCP4P48539 62 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 UBE2E1P51965 193 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 MTCP1P56278 107 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 HIST1H2BDP58876 126 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 HIST1H2BCP62807 126 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 MFGE8Q08431 387 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-207ENST00000507401 GAMTQ14353 236 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 HIST2H2BEQ16778 126 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 SMIM21Q3B7S5 101 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 ZNF260Q3ZCT1 412 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms