RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 TMEM170BQ5T4T1 132 aa11.2□□□□□ -0.62
COL6A3-212ENST00000491769 RNASE6Q93091 150 aaKnown RBP11.2□□□□□ -0.62
COL6A3-212ENST00000491769 IGKV3D-20A0A0C4DH25 116 aa11.2□□□□□ -0.62
COL6A3-212ENST00000491769 C8orf88P0DMB2 117 aa11.2□□□□□ -0.62
COL6A3-212ENST00000491769 ABLIM2Q6H8Q1 611 aa11.2□□□□□ -0.62
COL6A3-212ENST00000491769 OTX1P32242 354 aaPredicted RBP11.2□□□□□ -0.62
COL6A3-212ENST00000491769 TMEM105Q8N8V8 129 aa11.2□□□□□ -0.62
COL6A3-212ENST00000491769 OR4D5Q8NGN0 318 aa11.2□□□□□ -0.62
COL6A3-212ENST00000491769 CLDND2Q8NHS1 167 aa11.2□□□□□ -0.62
COL6A3-212ENST00000491769 SSC4DQ8WTU2 575 aa11.2□□□□□ -0.62
COL6A3-212ENST00000491769 TMEM45BQ96B21 275 aa11.2□□□□□ -0.62
COL6A3-212ENST00000491769 TRIP11Q15643 1979 aa11.2□□□□□ -0.62
COL6A3-212ENST00000491769 ARL14EPLP0DKL9 152 aa11.2□□□□□ -0.62
COL6A3-212ENST00000491769 GLRXP35754 106 aa11.2□□□□□ -0.62
COL6A3-212ENST00000491769 CRYBA2P53672 197 aa11.2□□□□□ -0.62
COL6A3-212ENST00000491769 NANOS3P60323 173 aaKnown RBP11.2□□□□□ -0.62
COL6A3-212ENST00000491769 MUC1P15941 1255 aaPredicted RBP11.19□□□□□ -0.62
COL6A3-212ENST00000491769 LINC00305Q7Z4B0 112 aa11.19□□□□□ -0.62
COL6A3-212ENST00000491769 RFLNBQ8N5W9 214 aa11.19□□□□□ -0.62
COL6A3-212ENST00000491769 GPR146Q96CH1 333 aa11.19□□□□□ -0.62
COL6A3-212ENST00000491769 TMEM70Q9BUB7 260 aa11.19□□□□□ -0.62
COL6A3-212ENST00000491769 CTSBP07858 339 aa11.19□□□□□ -0.62
COL6A3-212ENST00000491769 TCF24Q7RTU0 167 aa11.19□□□□□ -0.62
COL6A3-212ENST00000491769 REC114Q7Z4M0 266 aa11.19□□□□□ -0.62
COL6A3-212ENST00000491769 PSCAO43653 123 aa11.19□□□□□ -0.62
COL6A3-212ENST00000491769 GLMPQ8WWB7 406 aa11.19□□□□□ -0.62
COL6A3-212ENST00000491769 RFPL3SP0C7P2 107 aa11.19□□□□□ -0.62
COL6A3-212ENST00000491769 JOSD1Q15040 202 aaPredicted RBP11.19□□□□□ -0.62
COL6A3-212ENST00000491769 COL5A1-AS1Q5SY13 56 aa11.19□□□□□ -0.62
COL6A3-212ENST00000491769 NUDT10Q8NFP7 164 aa11.19□□□□□ -0.62
COL6A3-212ENST00000491769 NUDT11Q96G61 164 aa11.19□□□□□ -0.62
COL6A3-212ENST00000491769 MAP1BP46821 2468 aaKnown RBP11.19□□□□□ -0.62
COL6A3-212ENST00000491769 IGKV1-8A0A0C4DH67 115 aa11.19□□□□□ -0.62
COL6A3-212ENST00000491769 CECR9P0C854 216 aa11.19□□□□□ -0.62
COL6A3-212ENST00000491769 BCL2P10415 239 aa11.19□□□□□ -0.62
COL6A3-212ENST00000491769 TNFSF18Q9UNG2 199 aa11.19□□□□□ -0.62
COL6A3-212ENST00000491769 ICAM4Q14773 271 aa11.18□□□□□ -0.62
COL6A3-212ENST00000491769 H1FOOQ8IZA3 346 aaPredicted RBP11.18□□□□□ -0.62
COL6A3-212ENST00000491769 PRELID3AQ96N28 172 aa11.18□□□□□ -0.62
COL6A3-212ENST00000491769 TMEM222Q9H0R3 208 aa11.18□□□□□ -0.62
COL6A3-212ENST00000491769 KCNK7Q9Y2U2 307 aa11.18□□□□□ -0.62
COL6A3-212ENST00000491769 SERF2P84101 59 aa11.18□□□□□ -0.62
COL6A3-212ENST00000491769 ZNF146Q15072 292 aa11.18□□□□□ -0.62
COL6A3-212ENST00000491769 SPACA3Q8IXA5 215 aa11.18□□□□□ -0.62
COL6A3-212ENST00000491769 FAM216BQ8N7L0 139 aa11.18□□□□□ -0.62
COL6A3-212ENST00000491769 TCF19Q9Y242 345 aa11.18□□□□□ -0.62
COL6A3-212ENST00000491769 TRAV24A0A0B4J272 114 aa11.18□□□□□ -0.62
COL6A3-212ENST00000491769 CBLN4Q9NTU7 201 aa11.18□□□□□ -0.62
COL6A3-212ENST00000491769 RPS11P62280 158 aaKnown RBP eCLIP11.18□□□□□ -0.62
COL6A3-212ENST00000491769 TMEM30BQ3MIR4 351 aa11.18□□□□□ -0.62
COL6A3-212ENST00000491769 TMEM183AQ8IXX5 376 aa11.18□□□□□ -0.62
COL6A3-212ENST00000491769 ZIC4Q8N9L1 334 aa11.18□□□□□ -0.62
COL6A3-212ENST00000491769 COL25A1Q9BXS0 654 aaPredicted RBP11.18□□□□□ -0.62
COL6A3-212ENST00000491769 TRGV4A0A0C4DH28 118 aa11.18□□□□□ -0.62
COL6A3-212ENST00000491769 C7orf77A4D0Y5 90 aa11.18□□□□□ -0.62
COL6A3-212ENST00000491769 SAP30O75446 220 aa11.18□□□□□ -0.62
COL6A3-212ENST00000491769 EIF3GO75821 320 aaKnown RBP eCLIP11.18□□□□□ -0.62
COL6A3-212ENST00000491769 CRYBB3P26998 211 aa11.18□□□□□ -0.62
COL6A3-212ENST00000491769 ZXDCQ2QGD7 858 aaPredicted RBP11.18□□□□□ -0.62
COL6A3-212ENST00000491769 RTN4RL2Q86UN3 420 aa11.18□□□□□ -0.62
COL6A3-212ENST00000491769 SHANK3Q9BYB0 1731 aa11.18□□□□□ -0.62
COL6A3-212ENST00000491769 CD33P20138 364 aa11.17□□□□□ -0.62
COL6A3-212ENST00000491769 NPBWR2P48146 333 aa11.17□□□□□ -0.62
COL6A3-212ENST00000491769 SELENOHQ8IZQ5 122 aaKnown RBP11.17□□□□□ -0.62
COL6A3-212ENST00000491769 C3orf56Q8N813 242 aa11.17□□□□□ -0.62
COL6A3-212ENST00000491769 SH3BGRL3Q9H299 93 aa11.17□□□□□ -0.62
COL6A3-212ENST00000491769 LHFPL6Q9Y693 200 aa11.17□□□□□ -0.62
COL6A3-212ENST00000491769 PRR32B1ATL7 298 aa11.17□□□□□ -0.62
COL6A3-212ENST00000491769 MARVELD1Q9BSK0 173 aa11.17□□□□□ -0.62
COL6A3-212ENST00000491769 PCM1Q15154 2024 aa11.17□□□□□ -0.62
COL6A3-212ENST00000491769 COX5BP10606 129 aa11.17□□□□□ -0.62
COL6A3-212ENST00000491769 FAM3BP58499 235 aaPredicted RBP11.17□□□□□ -0.62
COL6A3-212ENST00000491769 SDF2L1Q9HCN8 221 aa11.17□□□□□ -0.62
COL6A3-212ENST00000491769 NXT2Q9NPJ8 142 aaKnown RBP11.17□□□□□ -0.62
COL6A3-212ENST00000491769 TPRP12270 2363 aaKnown RBP11.17□□□□□ -0.62
COL6A3-212ENST00000491769 TRPM3Q9HCF6 1732 aaPredicted RBP11.17□□□□□ -0.62
COL6A3-212ENST00000491769 NHSL1Q5SYE7 1610 aa11.17□□□□□ -0.62
COL6A3-212ENST00000491769 TMEM167AQ8TBQ9 72 aa11.17□□□□□ -0.62
COL6A3-212ENST00000491769 SEC11BP0C7V7 166 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 TNFRSF9Q07011 255 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 TMEM42Q69YG0 159 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 CYB561D1Q8N8Q1 229 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 OR9G4Q8NGQ1 327 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 C21orf62Q9NYP8 219 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 MUC21A0A0G2JKD1 596 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 MUC21A0A140T8X8 626 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 FAM90A10PA6NDY2 464 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 FAM90A18PA6NE21 464 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 FAM90A16PA6NEW6 464 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 FAM90A20PA6NIJ5 464 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 FAM90A8PA6NJQ4 464 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 FAM90A7PA6NKC0 464 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 FAM90A22PA8MWA6 464 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 FAM90A12PA8MX19 464 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 FAM90A5PA8MXJ8 464 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 FAM90A23PA8MXZ1 464 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 FAM90A15PP0C7V4 464 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 FAM90A13PP0C7W8 464 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 FAM90A14PP0C7W9 464 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 FAM90A24PP0C7X0 464 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms