RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 M0R381 172 aa11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 HCP5Q6MZN7 132 aa11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 EEF1AKMT3Q96AZ1 226 aa11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 METTL12A8MUP2 240 aa11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 ZNF818PQ6ZRF7 136 aa11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 CLDND2Q8NHS1 167 aa11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 NHP2Q9NX24 153 aaKnown RBP11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 ARFGEF1Q9Y6D6 1849 aa11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 DCAF10Q5QP82 559 aa11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 PLSCR4Q9NRQ2 329 aa11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 PPIAL4DF5H284 164 aa11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 IFI27P40305 119 aaPredicted RBP11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 VAX1Q5SQQ9 334 aa11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 SF3B6Q9Y3B4 125 aaKnown RBP11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 PTPRDP23468 1912 aa11.56□□□□□ -0.56
CCDC88A-204ENST00000413716 PQLC2LA1A4F0 135 aa11.55□□□□□ -0.56
CCDC88A-204ENST00000413716 ST6GALNAC6Q969X2 333 aa11.55□□□□□ -0.56
CCDC88A-204ENST00000413716 RUNX1Q01196 453 aa11.55□□□□□ -0.56
CCDC88A-204ENST00000413716 UNQ9370/PRO34162Q6UXP9 181 aa11.55□□□□□ -0.56
CCDC88A-204ENST00000413716 RSPO3Q9BXY4 272 aaPredicted RBP11.55□□□□□ -0.56
CCDC88A-204ENST00000413716 RBBP6Q7Z6E9 1792 aaKnown RBP11.55□□□□□ -0.56
CCDC88A-204ENST00000413716 SAMD5Q5TGI4 173 aa11.55□□□□□ -0.56
CCDC88A-204ENST00000413716 ZNF236Q9UL36 1845 aa11.55□□□□□ -0.56
CCDC88A-204ENST00000413716 LMO7DNF2Z398 122 aa11.55□□□□□ -0.56
CCDC88A-204ENST00000413716 RBMY1FQ15415 496 aaKnown RBP11.55□□□□□ -0.56
CCDC88A-204ENST00000413716 MIC13Q5XKP0 118 aa11.55□□□□□ -0.56
CCDC88A-204ENST00000413716 TMEM222Q9H0R3 208 aa11.55□□□□□ -0.56
CCDC88A-204ENST00000413716 MS4A5Q9H3V2 200 aa11.55□□□□□ -0.56
CCDC88A-204ENST00000413716 SHANK1Q9Y566 2161 aa11.55□□□□□ -0.56
CCDC88A-204ENST00000413716 PKD1L3Q7Z443 1732 aa11.55□□□□□ -0.56
CCDC88A-204ENST00000413716 A0A1W2PP11 408 aa11.55□□□□□ -0.56
CCDC88A-204ENST00000413716 BGLAPP02818 100 aa11.55□□□□□ -0.56
CCDC88A-204ENST00000413716 ORMDL3Q8N138 153 aa11.55□□□□□ -0.56
CCDC88A-204ENST00000413716 V9GYH0 126 aa11.55□□□□□ -0.56
CCDC88A-204ENST00000413716 TNRC6AQ8NDV7 1962 aaKnown RBP11.55□□□□□ -0.56
CCDC88A-204ENST00000413716 FOXC1Q12948 553 aa11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.54□□□□□ -0.561e-9■■■■□ 23
CCDC88A-204ENST00000413716 SFTA2Q6UW10 78 aa11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 VSTM2LQ96N03 204 aa11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 A0A1B0GUT8 65 aa11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 ETHE1O95571 254 aa11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 CXorf66Q5JRM2 361 aaPredicted RBP11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 WDR82Q6UXN9 313 aa11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 TMEM30AQ9NV96 361 aa11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 SEMA5BQ9P283 1151 aa11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 ZFP64Q9NPA5 681 aa11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 C8orf88P0DMB2 117 aa11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 Q6AWC8 147 aa11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 GGTLC1Q9BX51 225 aa11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 JPT2Q9H910 190 aa11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 MRM2Q9UI43 246 aaKnown RBP11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 PAX1P15863 534 aa11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 POC1AQ8NBT0 407 aa11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 TRAV5A0A0B4J249 113 aa11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 CLDN14O95500 239 aa11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 SEC11AP67812 179 aa11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 CD300CQ08708 224 aa11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 DTX2Q86UW9 622 aa11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 SHISA5Q8N114 240 aa11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 MZB1Q8WU39 189 aa11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 EPDR1Q9UM22 224 aa11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 RND2P52198 227 aa11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 TAF15Q92804 592 aaKnown RBP eCLIP11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 NPCDR1Q9BY65 106 aa11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 IGKV3D-20A0A0C4DH25 116 aa11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 ARRDC1-AS1Q9H2J1 176 aa11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 SPTAN1Q13813 2472 aaKnown RBP11.54□□□□□ -0.56
CCDC88A-204ENST00000413716 THADAQ6YHU6 1953 aa11.53□□□□□ -0.56
CCDC88A-204ENST00000413716 CA7P43166 264 aa11.53□□□□□ -0.56
CCDC88A-204ENST00000413716 NKG7Q16617 165 aa11.53□□□□□ -0.56
CCDC88A-204ENST00000413716 RIPPLY2Q5TAB7 128 aa11.53□□□□□ -0.56
CCDC88A-204ENST00000413716 GSN-AS1Q9NRJ2 163 aa11.53□□□□□ -0.56
CCDC88A-204ENST00000413716 NPPCP23582 126 aa11.53□□□□□ -0.56
CCDC88A-204ENST00000413716 TRA2AQ13595 282 aaKnown RBP eCLIP11.53□□□□□ -0.562e-6■■■■■ 27.7
CCDC88A-204ENST00000413716 ALS2Q96Q42 1657 aa11.53□□□□□ -0.56
CCDC88A-204ENST00000413716 C1orf185Q5T7R7 199 aa11.53□□□□□ -0.56
CCDC88A-204ENST00000413716 DLK2Q6UY11 383 aa11.53□□□□□ -0.56
CCDC88A-204ENST00000413716 KLK8O60259 260 aa11.53□□□□□ -0.56
CCDC88A-204ENST00000413716 CRYBB3P26998 211 aa11.53□□□□□ -0.56
CCDC88A-204ENST00000413716 ACER2Q5QJU3 275 aa11.53□□□□□ -0.56
CCDC88A-204ENST00000413716 C1QTNF12Q5T7M4 302 aa11.53□□□□□ -0.56
CCDC88A-204ENST00000413716 UNQ5815/PRO19632Q6UWF5 114 aa11.53□□□□□ -0.56
CCDC88A-204ENST00000413716 MBD1Q9UIS9 605 aaPredicted RBP11.53□□□□□ -0.56
CCDC88A-204ENST00000413716 A0A1B0GTH9 108 aa11.53□□□□□ -0.56
CCDC88A-204ENST00000413716 ODAMA1E959 279 aa11.53□□□□□ -0.56
CCDC88A-204ENST00000413716 J3QT63 122 aa11.53□□□□□ -0.56
CCDC88A-204ENST00000413716 CNRIP1Q96F85 164 aaPredicted RBP11.53□□□□□ -0.56
CCDC88A-204ENST00000413716 PDLIM7Q9NR12 457 aa11.53□□□□□ -0.56
CCDC88A-204ENST00000413716 ITGB1BP1O14713 200 aa11.53□□□□□ -0.56
CCDC88A-204ENST00000413716 MYOGP15173 224 aa11.53□□□□□ -0.56
CCDC88A-204ENST00000413716 TMEM171Q8WVE6 324 aa11.53□□□□□ -0.56
CCDC88A-204ENST00000413716 HIST1H2BAQ96A08 127 aa11.53□□□□□ -0.56
CCDC88A-204ENST00000413716 SF3B5Q9BWJ5 86 aaKnown RBP11.53□□□□□ -0.56
CCDC88A-204ENST00000413716 H0YL77 283 aa11.52□□□□□ -0.56
CCDC88A-204ENST00000413716 LOC285556D6RIA3 1793 aa11.52□□□□□ -0.56
CCDC88A-204ENST00000413716 VENTXO95231 258 aa11.52□□□□□ -0.56
CCDC88A-204ENST00000413716 HOGA1Q86XE5 327 aa11.52□□□□□ -0.56
CCDC88A-204ENST00000413716 TMEM74BQ9NUR3 256 aa11.52□□□□□ -0.56
CCDC88A-204ENST00000413716 HAX1O00165 279 aa11.52□□□□□ -0.56
CCDC88A-204ENST00000413716 OCIAD2Q56VL3 154 aa11.52□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms