RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 PTBP3O95758 552 aaKnown RBP9.45□□□□□ -0.9
PTPRF-204ENST00000412568 UCP3P55916 312 aa9.45□□□□□ -0.9
PTPRF-204ENST00000412568 MMDQ15546 238 aa9.45□□□□□ -0.9
PTPRF-204ENST00000412568 HCP5Q6MZN7 132 aa9.45□□□□□ -0.9
PTPRF-204ENST00000412568 MRPL37Q9BZE1 423 aaKnown RBP9.45□□□□□ -0.9
PTPRF-204ENST00000412568 ADAMTS9Q9P2N4 1935 aa9.44□□□□□ -0.9
PTPRF-204ENST00000412568 A8MXK9 166 aa9.44□□□□□ -0.9
PTPRF-204ENST00000412568 SRSF10O75494 262 aaKnown RBP9.44□□□□□ -0.9
PTPRF-204ENST00000412568 TRGC2P03986 189 aa9.44□□□□□ -0.9
PTPRF-204ENST00000412568 TAS2R45P59539 299 aa9.44□□□□□ -0.9
PTPRF-204ENST00000412568 STARD4Q96DR4 205 aa9.44□□□□□ -0.9
PTPRF-204ENST00000412568 ELOA3CA0A087WX78 387 aaPredicted RBP9.44□□□□□ -0.9
PTPRF-204ENST00000412568 TRAV24A0A0B4J272 114 aa9.44□□□□□ -0.9
PTPRF-204ENST00000412568 CHEK1O14757 476 aa9.44□□□□□ -0.9
PTPRF-204ENST00000412568 NPY1RP25929 384 aa9.44□□□□□ -0.9
PTPRF-204ENST00000412568 GPR6P46095 362 aaPredicted RBP9.44□□□□□ -0.9
PTPRF-204ENST00000412568 PTTG1IPP53801 180 aa9.44□□□□□ -0.9
PTPRF-204ENST00000412568 RANP62826 216 aaKnown RBP9.44□□□□□ -0.9
PTPRF-204ENST00000412568 PRR30Q53SZ7 412 aaPredicted RBP9.44□□□□□ -0.9
PTPRF-204ENST00000412568 ABHD12Q8N2K0 398 aa9.44□□□□□ -0.9
PTPRF-204ENST00000412568 CYB561D1Q8N8Q1 229 aa9.44□□□□□ -0.9
PTPRF-204ENST00000412568 DUXBA0A1W2PPF3 345 aa9.44□□□□□ -0.9
PTPRF-204ENST00000412568 MARCH11A6NNE9 402 aa9.44□□□□□ -0.9
PTPRF-204ENST00000412568 PITX3O75364 302 aa9.44□□□□□ -0.9
PTPRF-204ENST00000412568 PNRC1Q12796 327 aaPredicted RBP9.44□□□□□ -0.9
PTPRF-204ENST00000412568 SLC24A4Q8NFF2 622 aa9.44□□□□□ -0.9
PTPRF-204ENST00000412568 GTF3AQ92664 365 aaKnown RBP9.44□□□□□ -0.9
PTPRF-204ENST00000412568 GALNT14Q96FL9 552 aa9.44□□□□□ -0.9
PTPRF-204ENST00000412568 PPP1R14DQ9NXH3 145 aa9.44□□□□□ -0.9
PTPRF-204ENST00000412568 ZDHHC8Q9ULC8 765 aa9.44□□□□□ -0.9
PTPRF-204ENST00000412568 HLA-GP17693 338 aa9.43□□□□□ -0.9
PTPRF-204ENST00000412568 QRFPP83859 136 aa9.43□□□□□ -0.9
PTPRF-204ENST00000412568 DHRS11Q6UWP2 260 aa9.43□□□□□ -0.9
PTPRF-204ENST00000412568 ZNF645Q8N7E2 425 aa9.43□□□□□ -0.9
PTPRF-204ENST00000412568 ADTRPQ96IZ2 230 aa9.43□□□□□ -0.9
PTPRF-204ENST00000412568 OR51M1Q9H341 326 aa9.43□□□□□ -0.9
PTPRF-204ENST00000412568 SONP18583 2426 aaKnown RBP9.43□□□□□ -0.9
PTPRF-204ENST00000412568 KLRB1Q12918 225 aa9.43□□□□□ -0.9
PTPRF-204ENST00000412568 MRPL30Q8TCC3 161 aaKnown RBP9.43□□□□□ -0.9
PTPRF-204ENST00000412568 NEIL1Q96FI4 390 aaPredicted RBP9.43□□□□□ -0.9
PTPRF-204ENST00000412568 PAM16Q9Y3D7 125 aa9.43□□□□□ -0.9
PTPRF-204ENST00000412568 ARFGEF3Q5TH69 2177 aa9.43□□□□□ -0.9
PTPRF-204ENST00000412568 A1L4Q6 167 aa9.43□□□□□ -0.9
PTPRF-204ENST00000412568 GATCO43716 136 aaKnown RBP9.43□□□□□ -0.9
PTPRF-204ENST00000412568 SLC25A17O43808 307 aa9.43□□□□□ -0.9
PTPRF-204ENST00000412568 CLEC3BP05452 202 aa9.43□□□□□ -0.9
PTPRF-204ENST00000412568 PKIAP61925 76 aa9.43□□□□□ -0.9
PTPRF-204ENST00000412568 SUPT4H1P63272 117 aaKnown RBP9.43□□□□□ -0.9
PTPRF-204ENST00000412568 GAMTQ14353 236 aa9.43□□□□□ -0.9
PTPRF-204ENST00000412568 Q56UQ5 140 aa9.43□□□□□ -0.9
PTPRF-204ENST00000412568 DPPA3Q6W0C5 159 aa9.43□□□□□ -0.9
PTPRF-204ENST00000412568 OR4P4Q8NGL7 312 aa9.43□□□□□ -0.9
PTPRF-204ENST00000412568 OR4C12Q96R67 309 aa9.43□□□□□ -0.9
PTPRF-204ENST00000412568 FKBP11Q9NYL4 201 aa9.43□□□□□ -0.9
PTPRF-204ENST00000412568 C17orf98A8MV24 154 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 PLAUP00749 431 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 CCL3L1P16619 93 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 ATP6V1FQ16864 119 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 TMEM183BQ1AE95 376 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 KDF1Q8NAX2 398 aaPredicted RBP9.42□□□□□ -0.9
PTPRF-204ENST00000412568 ZNF596Q8TC21 504 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 RARRES2Q99969 163 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 TMUB1Q9BVT8 246 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 RBKSQ9H477 322 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 LYRM2Q9NU23 88 aaPredicted RBP9.42□□□□□ -0.9
PTPRF-204ENST00000412568 ZNF503-AS2A6NEH8 195 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 SLC31A2O15432 143 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 CRISP2P16562 243 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 OR5I1Q13606 314 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 WDR82Q6UXN9 313 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 SPNS3Q6ZMD2 512 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 ZBTB34Q8NCN2 500 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 ZDHHC16Q969W1 377 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 IGHV1-69-2A0A0G2JMI3 117 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 A0A1W2PNU3 283 aaPredicted RBP9.42□□□□□ -0.9
PTPRF-204ENST00000412568 IQCF6A8MYZ5 107 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 PSPNO60542 156 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 PAGE4O60829 102 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 HPRT1P00492 218 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 REG1AP05451 166 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 TCL1AP56279 114 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 PRO3102Q9H379 93 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 PITPNC1Q9UKF7 332 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 YLPM1P49750 1951 aaKnown RBP9.42□□□□□ -0.9
PTPRF-204ENST00000412568 IGKV3-7A0A075B6H7 116 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 IGHV3OR16-10A0A075B7F0 116 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 LOC102723971A0A1B0GUV8 181 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.42□□□□□ -0.9
PTPRF-204ENST00000412568 IGSF23A1L1A6 192 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 PGA5P0DJD9 388 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 LYZP61626 148 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 B2MP61769 119 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 PEAR1Q5VY43 1037 aaPredicted RBP9.42□□□□□ -0.9
PTPRF-204ENST00000412568 ELOVL1Q9BW60 279 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 ASCL3Q9NQ33 180 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 NAT8Q9UHE5 227 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 OR51B2Q9Y5P1 312 aa9.42□□□□□ -0.9
PTPRF-204ENST00000412568 DANCRP0C864 163 aa9.41□□□□□ -0.9
PTPRF-204ENST00000412568 OTX1P32242 354 aaPredicted RBP9.41□□□□□ -0.9
PTPRF-204ENST00000412568 RSPO1Q2MKA7 263 aaPredicted RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms