RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 CA2P00918 260 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 NGFP01138 241 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 STAG3L2P0CL84 134 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 STAG3L3P0CL85 134 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 B3GALT5-AS1P59052 145 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 RAC3P60763 192 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 PCBD1P61457 104 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 RPL31P62899 125 aaKnown RBP5.67□□□□□ -1.5
VPS39-202ENST00000348544 HYAL1Q12794 435 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 RPEL1Q2QD12 228 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 TMEM136Q6ZRR5 245 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 GGNQ86UU5 652 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 FAM58AQ8N1B3 248 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 OR4F17Q8NGA8 305 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 PRRG4Q9BZD6 226 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 CTNNBIP1Q9NSA3 81 aaPredicted RBP5.67□□□□□ -1.5
VPS39-202ENST00000348544 TP73-AS1Q9UF72 201 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 NAT8BQ9UHF3 227 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 MRPS16Q9Y3D3 137 aaKnown RBP5.67□□□□□ -1.5
VPS39-202ENST00000348544 A0A1W2PPV4 95 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 CXCL13O43927 109 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 LINC00205P59089 165 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 SLC35B1P78383 322 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 CCL7P80098 99 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 TGFBR3Q03167 851 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 EIF4EBP1Q13541 118 aaPredicted RBP5.67□□□□□ -1.5
VPS39-202ENST00000348544 OR10J3Q5JRS4 329 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 DCAF12Q5T6F0 453 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 ZNF497Q6ZNH5 498 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 MRPL21Q7Z2W9 205 aaKnown RBP5.67□□□□□ -1.5
VPS39-202ENST00000348544 ERASQ7Z444 233 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 LINC00596Q86U02 117 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 LOXL4Q96JB6 756 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 EAF1Q96JC9 268 aaPredicted RBP5.67□□□□□ -1.5
VPS39-202ENST00000348544 NCKAP5O14513 1909 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 TRBV9A0A0B4J1U6 114 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 A0A0G2JMM0 328 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 A0A1W2PN81 502 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 A0A1W2PPB8 328 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 A0A1W2PRS3 328 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 IGLC7A0M8Q6 106 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 C5orf49A4QMS7 147 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 KIR3DP1A8MWS1 328 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 BMPR1BO00238 502 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 SS18L1O75177 396 aaPredicted RBP5.66□□□□□ -1.5
VPS39-202ENST00000348544 SCRG1O75711 98 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 WISP2O76076 250 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 PPBPP02775 128 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 CD27P26842 260 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 CD1BP29016 333 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 C9orf135Q5VTT2 229 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 SPATA31B1PQ5VZV4 182 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 YRDCQ86U90 279 aaKnown RBP5.66□□□□□ -1.5
VPS39-202ENST00000348544 ZNF808Q8N4W9 903 aaPredicted RBP5.66□□□□□ -1.5
VPS39-202ENST00000348544 TSKUQ8WUA8 353 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 CLEC7AQ9BXN2 247 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 CLEC1BQ9P126 229 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 TRAPPC2LQ9UL33 140 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 SDK1Q7Z5N4 2213 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 A0A096LPE4 126 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 IGHV1-69-2A0A0G2JMI3 117 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 A0A1W2PPZ6 126 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 NEURL1O76050 574 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 CA6P23280 308 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 SRIP30626 198 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 FOXG1P55316 489 aaPredicted RBP5.66□□□□□ -1.5
VPS39-202ENST00000348544 CX3CL1P78423 397 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 PCOLCEQ15113 449 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 SPATA46Q5T0L3 261 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 RIPPLY2Q5TAB7 128 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 MIC13Q5XKP0 118 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 TCTEX1D1Q8N7M0 179 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 OR4C5Q8NGB2 326 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 MRGPRDQ8TDS7 321 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 ABHD3Q8WU67 409 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 C11orf52Q96A22 123 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 MGST2Q99735 147 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 TXNDC17Q9BRA2 123 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 OR2D2Q9H210 308 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 HES4Q9HCC6 221 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 SH2D2AQ9NP31 389 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 SLC35D1Q9NTN3 355 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 BET1LQ9NYM9 111 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 C19orf25Q9UFG5 118 aaPredicted RBP5.66□□□□□ -1.5
VPS39-202ENST00000348544 RNF24Q9Y225 148 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 FREM1Q5H8C1 2179 aa5.66□□□□□ -1.5
VPS39-202ENST00000348544 MED12LQ86YW9 2145 aa5.65□□□□□ -1.5
VPS39-202ENST00000348544 FAM166BA8MTA8 275 aa5.65□□□□□ -1.5
VPS39-202ENST00000348544 RNF212BA8MTL3 300 aa5.65□□□□□ -1.5
VPS39-202ENST00000348544 A8MXE2 369 aa5.65□□□□□ -1.5
VPS39-202ENST00000348544 C9JCJ5 164 aa5.65□□□□□ -1.5
VPS39-202ENST00000348544 CXorf1O96002 111 aa5.65□□□□□ -1.5
VPS39-202ENST00000348544 REG1AP05451 166 aa5.65□□□□□ -1.5
VPS39-202ENST00000348544 GLB1P16278 677 aa5.65□□□□□ -1.5
VPS39-202ENST00000348544 TNFSF4P23510 183 aa5.65□□□□□ -1.5
VPS39-202ENST00000348544 SRD5A2P31213 254 aa5.65□□□□□ -1.5
VPS39-202ENST00000348544 TCL1AP56279 114 aa5.65□□□□□ -1.5
VPS39-202ENST00000348544 NXPH1P58417 271 aa5.65□□□□□ -1.5
VPS39-202ENST00000348544 ARG2P78540 354 aa5.65□□□□□ -1.5
VPS39-202ENST00000348544 HTD2P86397 168 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms