RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 CRYABP02511 175 aaKnown RBP16.03■□□□□ 0.16
COL9A3-201ENST00000343916 PDZD11Q5EBL8 140 aa16.03■□□□□ 0.16
COL9A3-201ENST00000343916 SPNS3Q6ZMD2 512 aa16.03■□□□□ 0.16
COL9A3-201ENST00000343916 LHX4Q969G2 390 aa16.03■□□□□ 0.16
COL9A3-201ENST00000343916 YPEL2Q96QA6 119 aa16.03■□□□□ 0.16
COL9A3-201ENST00000343916 GCM1Q9NP62 436 aa16.03■□□□□ 0.16
COL9A3-201ENST00000343916 SLC39A9Q9NUM3 307 aa16.03■□□□□ 0.16
COL9A3-201ENST00000343916 CALYQ9NYX4 217 aa16.03■□□□□ 0.16
COL9A3-201ENST00000343916 CA5BP1Q8WTZ4 195 aa16.02■□□□□ 0.16
COL9A3-201ENST00000343916 SFXN3Q9BWM7 321 aa16.02■□□□□ 0.16
COL9A3-201ENST00000343916 A8MXE2 369 aa16.02■□□□□ 0.15
COL9A3-201ENST00000343916 CYB5BO43169 146 aa16.02■□□□□ 0.15
COL9A3-201ENST00000343916 S100A2P29034 98 aa16.02■□□□□ 0.15
COL9A3-201ENST00000343916 CEACAM8P31997 349 aaPredicted RBP16.02■□□□□ 0.15
COL9A3-201ENST00000343916 CR1LQ2VPA4 569 aa16.02■□□□□ 0.15
COL9A3-201ENST00000343916 CIB3Q96Q77 187 aaPredicted RBP16.02■□□□□ 0.15
COL9A3-201ENST00000343916 NDUFS6O75380 124 aaKnown RBP16.01■□□□□ 0.15
COL9A3-201ENST00000343916 CCKARP32238 428 aa16.01■□□□□ 0.15
COL9A3-201ENST00000343916 PRAMEF5Q5TYX0 476 aa16.01■□□□□ 0.15
COL9A3-201ENST00000343916 FAM57AQ8TBR7 257 aa16.01■□□□□ 0.15
COL9A3-201ENST00000343916 DCAF16Q9NXF7 216 aa16.01■□□□□ 0.15
COL9A3-201ENST00000343916 DMRT1Q9Y5R6 373 aa16.01■□□□□ 0.15
COL9A3-201ENST00000343916 TRAV3A0A0B4J244 114 aa16.01■□□□□ 0.15
COL9A3-201ENST00000343916 C15orf62A8K5M9 175 aa16.01■□□□□ 0.15
COL9A3-201ENST00000343916 F2RL2O00254 374 aa16.01■□□□□ 0.15
COL9A3-201ENST00000343916 HPRT1P00492 218 aa16.01■□□□□ 0.15
COL9A3-201ENST00000343916 IGHV1-46P01743 117 aa16.01■□□□□ 0.15
COL9A3-201ENST00000343916 TNFAIP6P98066 277 aaPredicted RBP16.01■□□□□ 0.15
COL9A3-201ENST00000343916 C17orf58Q2M2W7 97 aa16.01■□□□□ 0.15
COL9A3-201ENST00000343916 GFI1BQ5VTD9 330 aa16.01■□□□□ 0.15
COL9A3-201ENST00000343916 SLC35E3Q7Z769 313 aa16.01■□□□□ 0.15
COL9A3-201ENST00000343916 PFDN5Q99471 154 aa16.01■□□□□ 0.15
COL9A3-201ENST00000343916 NPCDR1Q9BY65 106 aa16.01■□□□□ 0.15
COL9A3-201ENST00000343916 GAR1Q9NY12 217 aaKnown RBP16.01■□□□□ 0.15
COL9A3-201ENST00000343916 TIMM9Q9Y5J7 89 aa16.01■□□□□ 0.15
COL9A3-201ENST00000343916 DSCAML1Q8TD84 2053 aa16■□□□□ 0.15
COL9A3-201ENST00000343916 HIST1H2BKO60814 126 aa16■□□□□ 0.15
COL9A3-201ENST00000343916 HIST1H2BJP06899 126 aa16■□□□□ 0.15
COL9A3-201ENST00000343916 HIST1H2BOP23527 126 aa16■□□□□ 0.15
COL9A3-201ENST00000343916 CD40P25942 277 aa16■□□□□ 0.15
COL9A3-201ENST00000343916 HIST1H2BBP33778 126 aa16■□□□□ 0.15
COL9A3-201ENST00000343916 HIST1H2BDP58876 126 aa16■□□□□ 0.15
COL9A3-201ENST00000343916 HIST1H2BCP62807 126 aa16■□□□□ 0.15
COL9A3-201ENST00000343916 HIST2H2BEQ16778 126 aa16■□□□□ 0.15
COL9A3-201ENST00000343916 ATP6V1FQ16864 119 aa16■□□□□ 0.15
COL9A3-201ENST00000343916 FFAR4Q5NUL3 377 aa16■□□□□ 0.15
COL9A3-201ENST00000343916 HIST2H2BFQ5QNW6 126 aaPredicted RBP16■□□□□ 0.15
COL9A3-201ENST00000343916 CENPVQ7Z7K6 275 aaPredicted RBP16■□□□□ 0.15
COL9A3-201ENST00000343916 ZNF383Q8NA42 475 aa16■□□□□ 0.15
COL9A3-201ENST00000343916 HIST1H2BHQ93079 126 aa16■□□□□ 0.15
COL9A3-201ENST00000343916 HIST1H2BNQ99877 126 aa16■□□□□ 0.15
COL9A3-201ENST00000343916 HIST1H2BMQ99879 126 aa16■□□□□ 0.15
COL9A3-201ENST00000343916 SH3BGRL2Q9UJC5 107 aa16■□□□□ 0.15
COL9A3-201ENST00000343916 TRGC2P03986 189 aa16■□□□□ 0.15
COL9A3-201ENST00000343916 MRGPRGQ86SM5 289 aa16■□□□□ 0.15
COL9A3-201ENST00000343916 OR10G4Q8NGN3 311 aa16■□□□□ 0.15
COL9A3-201ENST00000343916 OR6C3Q9NZP0 311 aa16■□□□□ 0.15
COL9A3-201ENST00000343916 TET2Q6N021 2002 aaPredicted RBP15.99■□□□□ 0.15
COL9A3-201ENST00000343916 A0A087WWC5 75 aa15.99■□□□□ 0.15
COL9A3-201ENST00000343916 OR10G9Q8NGN4 311 aa15.99■□□□□ 0.15
COL9A3-201ENST00000343916 OR10G7Q8NGN6 311 aa15.99■□□□□ 0.15
COL9A3-201ENST00000343916 OR10D4PQ8NGN7 298 aa15.99■□□□□ 0.15
COL9A3-201ENST00000343916 RNF7Q9UBF6 113 aa15.99■□□□□ 0.15
COL9A3-201ENST00000343916 VAX2Q9UIW0 290 aa15.99■□□□□ 0.15
COL9A3-201ENST00000343916 YLPM1P49750 1951 aaKnown RBP15.99■□□□□ 0.15
COL9A3-201ENST00000343916 RAI1Q7Z5J4 1906 aaPredicted RBP15.99■□□□□ 0.15
COL9A3-201ENST00000343916 CGB3P0DN86 165 aa15.99■□□□□ 0.15
COL9A3-201ENST00000343916 CGB7P0DN87 165 aa15.99■□□□□ 0.15
COL9A3-201ENST00000343916 CT45A1Q5HYN5 189 aa15.99■□□□□ 0.15
COL9A3-201ENST00000343916 CT45A3Q8NHU0 189 aa15.99■□□□□ 0.15
COL9A3-201ENST00000343916 GATAD1Q8WUU5 269 aa15.99■□□□□ 0.15
COL9A3-201ENST00000343916 SNRNP40Q96DI7 357 aaKnown RBP15.99■□□□□ 0.15
COL9A3-201ENST00000343916 ABHD17AQ96GS6 310 aa15.99■□□□□ 0.15
COL9A3-201ENST00000343916 CCL13Q99616 98 aa15.99■□□□□ 0.15
COL9A3-201ENST00000343916 GATA4P43694 442 aa15.98■□□□□ 0.15
COL9A3-201ENST00000343916 SELENOVP59797 346 aa15.98■□□□□ 0.15
COL9A3-201ENST00000343916 FAM216BQ8N7L0 139 aa15.98■□□□□ 0.15
COL9A3-201ENST00000343916 OR4A16Q8NH70 328 aa15.98■□□□□ 0.15
COL9A3-201ENST00000343916 S1PR3Q99500 378 aa15.98■□□□□ 0.15
COL9A3-201ENST00000343916 ZNF729A6NN14 1252 aaPredicted RBP15.97■□□□□ 0.15
COL9A3-201ENST00000343916 GYPAP02724 150 aa15.97■□□□□ 0.15
COL9A3-201ENST00000343916 C3orf36Q3SXR2 165 aa15.97■□□□□ 0.15
COL9A3-201ENST00000343916 KRTCAP3Q53RY4 240 aa15.97■□□□□ 0.15
COL9A3-201ENST00000343916 TCF23Q7RTU1 214 aa15.97■□□□□ 0.15
COL9A3-201ENST00000343916 ZCCHC24Q8N2G6 241 aaKnown RBP15.97■□□□□ 0.15
COL9A3-201ENST00000343916 GPR61Q9BZJ8 451 aa15.97■□□□□ 0.15
COL9A3-201ENST00000343916 IL19Q9UHD0 177 aa15.97■□□□□ 0.15
COL9A3-201ENST00000343916 LY86O95711 162 aa15.97■□□□□ 0.15
COL9A3-201ENST00000343916 IFNA10P01566 189 aa15.97■□□□□ 0.15
COL9A3-201ENST00000343916 SOD3P08294 240 aa15.97■□□□□ 0.15
COL9A3-201ENST00000343916 CD81P60033 236 aa15.97■□□□□ 0.15
COL9A3-201ENST00000343916 GNB2P62879 340 aa15.97■□□□□ 0.15
COL9A3-201ENST00000343916 CCL8P80075 99 aa15.97■□□□□ 0.15
COL9A3-201ENST00000343916 VWC2Q2TAL6 325 aa15.97■□□□□ 0.15
COL9A3-201ENST00000343916 KALRNO60229 2985 aa15.97■□□□□ 0.15
COL9A3-201ENST00000343916 DYSFO75923 2080 aa15.97■□□□□ 0.15
COL9A3-201ENST00000343916 SAA2-SAA4A0A096LPE2 208 aa15.96■□□□□ 0.15
COL9A3-201ENST00000343916 A0A0G2JNJ9 132 aa15.96■□□□□ 0.15
COL9A3-201ENST00000343916 SAA2P0DJI9 122 aaPredicted RBP15.96■□□□□ 0.15
COL9A3-201ENST00000343916 STUMQ69YW2 141 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms