RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 BUB1B-PAK6H3BSN5 160 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 H7C2Y5 167 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 RBP4P02753 201 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 MYOD1P15172 320 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 ATF4P18848 351 aaPredicted RBP3.35□□□□□ -1.87
MCF2-201ENST00000338585 ZNF137PP52743 207 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 OR4A47Q6IF82 309 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 CLEC2AQ6UVW9 174 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 VMO1Q7Z5L0 202 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 LHFPL4Q7Z7J7 247 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 TGIF2LXQ8IUE1 241 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 OR5AN1Q8NGI8 311 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 OR13D1Q8NGV5 346 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 TNFRSF14Q92956 283 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 TMEM186Q96B77 213 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 ADTRPQ96IZ2 230 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 RITA1Q96K30 269 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 RHOVQ96L33 236 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 ARPC5LQ9BPX5 153 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 QTRT1Q9BXR0 403 aaKnown RBP3.35□□□□□ -1.87
MCF2-201ENST00000338585 CYTL1Q9NRR1 136 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 TMEM140Q9NV12 185 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 FBXL17Q9UF56 701 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 CSMD2Q7Z408 3487 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 CELSR2Q9HCU4 2923 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 HELZ2Q9BYK8 2649 aaKnown RBP3.35□□□□□ -1.87
MCF2-201ENST00000338585 IGHV2-70DA0A0C4DH43 119 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 hCG_1809904A0A1W2PP81 198 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 A0A1W2PPE2 198 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 A0A1W2PR64 198 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 A0A1W2PRV1 198 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 RNASEK-C17orf49H0YIS7 233 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 M0R1W7 72 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 SYNGR2O43760 224 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 ENSAO43768 121 aaKnown RBP3.35□□□□□ -1.87
MCF2-201ENST00000338585 GPR137BO60478 399 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 RBMXL2O75526 392 aaKnown RBP3.35□□□□□ -1.87
MCF2-201ENST00000338585 CST7O76096 145 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 ARG1P05089 322 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 NQO2P16083 231 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 C4BPBP20851 252 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 PRTN3P24158 256 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 NUP62P37198 522 aaPredicted RBP3.35□□□□□ -1.87
MCF2-201ENST00000338585 KIR2DS2P43631 304 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 P2RY1P47900 373 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 PRRX1P54821 245 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 UBE2KP61086 200 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 ERVK-16P61578 105 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 RPS16P62249 146 aaKnown RBP3.35□□□□□ -1.87
MCF2-201ENST00000338585 VAMP2P63027 116 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 RELBQ01201 579 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 EWSR1Q01844 656 aaKnown RBP eCLIP3.35□□□□□ -1.87
MCF2-201ENST00000338585 TNFRSF9Q07011 255 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 TMEM267Q0VDI3 215 aaPredicted RBP3.35□□□□□ -1.87
MCF2-201ENST00000338585 FAM74A1Q5RGS3 127 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 RPL7L1Q6DKI1 246 aaKnown RBP3.35□□□□□ -1.87
MCF2-201ENST00000338585 SLC51BQ86UW2 128 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 SLC7A5P1Q8MH63 180 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 OR2C3Q8N628 320 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 TMEM252Q8N6L7 170 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 C17orf50Q8WW18 174 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 ST8SIA2Q92186 375 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 PCGF1Q9BSM1 259 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 SIRPDQ9H106 197 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 RBKSQ9H477 322 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 WFDC1Q9HC57 220 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 CTNNBIP1Q9NSA3 81 aaPredicted RBP3.35□□□□□ -1.87
MCF2-201ENST00000338585 LYRM2Q9NU23 88 aaPredicted RBP3.35□□□□□ -1.87
MCF2-201ENST00000338585 ZFP57Q9NU63 452 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 COA4Q9NYJ1 87 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 HSPB7Q9UBY9 170 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 PAIP2BQ9ULR5 123 aaKnown RBP3.35□□□□□ -1.87
MCF2-201ENST00000338585 TET2Q6N021 2002 aaPredicted RBP3.35□□□□□ -1.87
MCF2-201ENST00000338585 TNCP24821 2201 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 PIGBOS1A0A0B4J2F0 54 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 A8MXK9 166 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 LY6LH3BQJ8 138 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 ATG12O94817 140 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 APOA2P02652 100 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 SAA1P0DJI8 122 aaPredicted RBP3.34□□□□□ -1.87
MCF2-201ENST00000338585 MMP9P14780 707 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 HOXB4P17483 251 aaPredicted RBP3.34□□□□□ -1.87
MCF2-201ENST00000338585 PVALBP20472 110 aaPredicted RBP3.34□□□□□ -1.87
MCF2-201ENST00000338585 IL3RAP26951 378 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 HTR2BP41595 481 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 RTL8BQ17RB0 113 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 FBLN7Q53RD9 439 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 ZNF767PQ75MW2 155 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 MOB3BQ86TA1 216 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 TMEM217Q8N7C4 229 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 BEND2Q8NDZ0 799 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 HARBI1Q96MB7 349 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 TBX15Q96SF7 602 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 GSX2Q9BZM3 304 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 BARX1Q9HBU1 254 aaPredicted RBP3.34□□□□□ -1.87
MCF2-201ENST00000338585 HILPDAQ9Y5L2 63 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 ANKRD17O75179 2603 aaKnown RBP3.34□□□□□ -1.87
MCF2-201ENST00000338585 IGHV1-3A0A0C4DH29 117 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 A0A1W2PPI3 338 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 ODF3BA8MYP8 253 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms