RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 NPCDR1Q9BY65 106 aa14.84□□□□□ -0.03
SYNPO-201ENST00000307662 ABHD12Q8N2K0 398 aa14.83□□□□□ -0.03
SYNPO-201ENST00000307662 DRAM1Q8N682 238 aa14.83□□□□□ -0.03
SYNPO-201ENST00000307662 NPIPB13A6NJU9 1138 aa14.83□□□□□ -0.04
SYNPO-201ENST00000307662 NPIPB4C9JG80 1138 aa14.83□□□□□ -0.04
SYNPO-201ENST00000307662 SPEM2Q0P670 501 aa14.83□□□□□ -0.04
SYNPO-201ENST00000307662 ZNF826PQ6ZT77 177 aa14.83□□□□□ -0.04
SYNPO-201ENST00000307662 ODAMA1E959 279 aa14.83□□□□□ -0.04
SYNPO-201ENST00000307662 RBFOX2O43251 390 aaKnown RBP eCLIP14.83□□□□□ -0.04
SYNPO-201ENST00000307662 KCNS1Q96KK3 526 aa14.83□□□□□ -0.04
SYNPO-201ENST00000307662 MRPL13Q9BYD1 178 aaKnown RBP14.83□□□□□ -0.04
SYNPO-201ENST00000307662 ZNHIT1O43257 154 aa14.82□□□□□ -0.04
SYNPO-201ENST00000307662 IMMP2LQ96T52 175 aa14.82□□□□□ -0.04
SYNPO-201ENST00000307662 TM2D1Q9BX74 207 aa14.82□□□□□ -0.04
SYNPO-201ENST00000307662 CALYQ9NYX4 217 aa14.82□□□□□ -0.04
SYNPO-201ENST00000307662 JPT1Q9UK76 154 aa14.82□□□□□ -0.04
SYNPO-201ENST00000307662 SRSF3P84103 164 aaKnown RBP14.82□□□□□ -0.04
SYNPO-201ENST00000307662 OR4D5Q8NGN0 318 aa14.82□□□□□ -0.04
SYNPO-201ENST00000307662 IL4P05112 153 aa14.82□□□□□ -0.04
SYNPO-201ENST00000307662 ANOS1P23352 680 aa14.82□□□□□ -0.04
SYNPO-201ENST00000307662 DCAF10Q5QP82 559 aa14.82□□□□□ -0.04
SYNPO-201ENST00000307662 LGALS3P17931 250 aaKnown RBP14.82□□□□□ -0.04
SYNPO-201ENST00000307662 PSG9Q00887 426 aa14.82□□□□□ -0.04
SYNPO-201ENST00000307662 OPN3Q9H1Y3 402 aaPredicted RBP14.82□□□□□ -0.04
SYNPO-201ENST00000307662 PLSCR2Q9NRY7 297 aa14.82□□□□□ -0.04
SYNPO-201ENST00000307662 TRAV9-1A0A075B6T8 112 aa14.81□□□□□ -0.04
SYNPO-201ENST00000307662 PTPRFP10586 1907 aa14.81□□□□□ -0.04
SYNPO-201ENST00000307662 COL11A1P12107 1806 aaPredicted RBP14.81□□□□□ -0.04
SYNPO-201ENST00000307662 ZIC3O60481 467 aa14.81□□□□□ -0.04
SYNPO-201ENST00000307662 TFF2Q03403 129 aa14.81□□□□□ -0.04
SYNPO-201ENST00000307662 NR2C2APQ86WQ0 139 aa14.81□□□□□ -0.04
SYNPO-201ENST00000307662 RTN4RQ9BZR6 473 aa14.81□□□□□ -0.04
SYNPO-201ENST00000307662 IDI2-AS1Q9NZ38 188 aa14.81□□□□□ -0.04
SYNPO-201ENST00000307662 IGHV1-45A0A0A0MS14 117 aa14.81□□□□□ -0.04
SYNPO-201ENST00000307662 SLC25A17O43808 307 aa14.81□□□□□ -0.04
SYNPO-201ENST00000307662 ZNF146Q15072 292 aa14.81□□□□□ -0.04
SYNPO-201ENST00000307662 RIPPLY2Q5TAB7 128 aa14.81□□□□□ -0.04
SYNPO-201ENST00000307662 TAF1LQ8IZX4 1826 aa14.81□□□□□ -0.04
SYNPO-201ENST00000307662 TMEM229AB2RXF0 380 aa14.81□□□□□ -0.04
SYNPO-201ENST00000307662 SMAGPQ0VAQ4 97 aa14.81□□□□□ -0.04
SYNPO-201ENST00000307662 OR10J6PQ8NGY7 276 aa14.81□□□□□ -0.04
SYNPO-201ENST00000307662 SLC17A3O00476 420 aa14.8□□□□□ -0.04
SYNPO-201ENST00000307662 IL6RP08887 468 aaPredicted RBP14.8□□□□□ -0.04
SYNPO-201ENST00000307662 EMP1P54849 157 aa14.8□□□□□ -0.04
SYNPO-201ENST00000307662 TRIP6Q15654 476 aaKnown RBP14.8□□□□□ -0.04
SYNPO-201ENST00000307662 DEFB124Q8NES8 71 aa14.8□□□□□ -0.04
SYNPO-201ENST00000307662 GATAD1Q8WUU5 269 aa14.8□□□□□ -0.04
SYNPO-201ENST00000307662 RRHO14718 337 aa14.8□□□□□ -0.04
SYNPO-201ENST00000307662 COX5BP10606 129 aa14.8□□□□□ -0.04
SYNPO-201ENST00000307662 SLC22A18ASQ8N1D0 253 aa14.8□□□□□ -0.04
SYNPO-201ENST00000307662 SGK494Q96LW2 274 aa14.8□□□□□ -0.04
SYNPO-201ENST00000307662 ALKBH7Q9BT30 221 aaPredicted RBP14.8□□□□□ -0.04
SYNPO-201ENST00000307662 RNF126Q9BV68 326 aa14.8□□□□□ -0.04
SYNPO-201ENST00000307662 WFDC3Q8IUB2 231 aa14.8□□□□□ -0.04
SYNPO-201ENST00000307662 ZNF414Q96IQ9 312 aa14.8□□□□□ -0.04
SYNPO-201ENST00000307662 WNT5BQ9H1J7 359 aa14.8□□□□□ -0.04
SYNPO-201ENST00000307662 FGF16O43320 207 aa14.8□□□□□ -0.04
SYNPO-201ENST00000307662 CELA2AP08217 269 aa14.8□□□□□ -0.04
SYNPO-201ENST00000307662 DIRC2Q96SL1 478 aa14.8□□□□□ -0.04
SYNPO-201ENST00000307662 IGHV3-72A0A0B4J1Y9 119 aa14.79□□□□□ -0.04
SYNPO-201ENST00000307662 F8VVB4 439 aa14.79□□□□□ -0.04
SYNPO-201ENST00000307662 F8VWA3 439 aa14.79□□□□□ -0.04
SYNPO-201ENST00000307662 FCGR2BP31994 310 aaPredicted RBP14.79□□□□□ -0.04
SYNPO-201ENST00000307662 IGLV3-21P80748 117 aaPredicted RBP14.79□□□□□ -0.04
SYNPO-201ENST00000307662 FAM53AQ6NSI3 398 aaPredicted RBP14.79□□□□□ -0.04
SYNPO-201ENST00000307662 TMEM170AQ8WVE7 144 aa14.79□□□□□ -0.04
SYNPO-201ENST00000307662 FOXA3P55318 350 aaPredicted RBP14.79□□□□□ -0.04
SYNPO-201ENST00000307662 C10orf128Q5T292 105 aa14.79□□□□□ -0.04
SYNPO-201ENST00000307662 C1QL2Q7Z5L3 287 aa14.79□□□□□ -0.04
SYNPO-201ENST00000307662 ST6GALNAC3Q8NDV1 305 aa14.79□□□□□ -0.04
SYNPO-201ENST00000307662 C16orf92Q96LL3 132 aa14.79□□□□□ -0.04
SYNPO-201ENST00000307662 PTPRZ1P23471 2315 aaPredicted RBP14.79□□□□□ -0.04
SYNPO-201ENST00000307662 LY6G6FQ5SQ64 297 aa14.79□□□□□ -0.04
SYNPO-201ENST00000307662 UCP1P25874 307 aa14.79□□□□□ -0.04
SYNPO-201ENST00000307662 TNFSF10P50591 281 aa14.79□□□□□ -0.04
SYNPO-201ENST00000307662 GFRA1P56159 465 aa14.79□□□□□ -0.04
SYNPO-201ENST00000307662 ATP5IP56385 69 aaPredicted RBP14.79□□□□□ -0.04
SYNPO-201ENST00000307662 TMEM54Q969K7 222 aa14.79□□□□□ -0.04
SYNPO-201ENST00000307662 SBF2Q86WG5 1849 aa14.79□□□□□ -0.04
SYNPO-201ENST00000307662 CDX4O14627 284 aaPredicted RBP14.79□□□□□ -0.04
SYNPO-201ENST00000307662 PTGDSP41222 190 aa14.79□□□□□ -0.04
SYNPO-201ENST00000307662 CCL8P80075 99 aa14.79□□□□□ -0.04
SYNPO-201ENST00000307662 SYT8Q8NBV8 401 aa14.79□□□□□ -0.04
SYNPO-201ENST00000307662 APOBEC4Q8WW27 367 aaKnown RBP14.79□□□□□ -0.04
SYNPO-201ENST00000307662 VKORC1L1Q8N0U8 176 aa14.78□□□□□ -0.04
SYNPO-201ENST00000307662 LAMTOR2Q9Y2Q5 125 aa14.78□□□□□ -0.04
SYNPO-201ENST00000307662 KNTC1P50748 2209 aa14.78□□□□□ -0.04
SYNPO-201ENST00000307662 CX3CL1P78423 397 aa14.78□□□□□ -0.04
SYNPO-201ENST00000307662 MBNL2Q5VZF2 373 aaKnown RBP14.78□□□□□ -0.04
SYNPO-201ENST00000307662 GLRX5Q86SX6 157 aa14.78□□□□□ -0.04
SYNPO-201ENST00000307662 C16orf97H3BN30 126 aa14.78□□□□□ -0.04
SYNPO-201ENST00000307662 GDF9O60383 454 aa14.78□□□□□ -0.04
SYNPO-201ENST00000307662 ITLN1Q8WWA0 313 aa14.78□□□□□ -0.04
SYNPO-201ENST00000307662 RAXQ9Y2V3 346 aa14.78□□□□□ -0.04
SYNPO-201ENST00000307662 CLDN16Q9Y5I7 305 aa14.78□□□□□ -0.04
SYNPO-201ENST00000307662 GPX4P36969 197 aaPredicted RBP14.78□□□□□ -0.04
SYNPO-201ENST00000307662 ICAM4Q14773 271 aa14.78□□□□□ -0.04
SYNPO-201ENST00000307662 FAM214BQ7L5A3 538 aa14.78□□□□□ -0.04
SYNPO-201ENST00000307662 P2RY6Q15077 328 aa14.77□□□□□ -0.04
SYNPO-201ENST00000307662 METTL26Q96S19 204 aa14.77□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms