RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 PLAUP00749 431 aa9.17□□□□□ -0.94
CD44-201ENST00000263398 ADRA2AP08913 450 aa9.17□□□□□ -0.94
CD44-201ENST00000263398 ARL14EPLP0DKL9 152 aa9.17□□□□□ -0.94
CD44-201ENST00000263398 OR4B1Q8NGF8 309 aa9.17□□□□□ -0.94
CD44-201ENST00000263398 PLSCR2Q9NRY7 297 aa9.17□□□□□ -0.94
CD44-201ENST00000263398 GREB1Q4ZG55 1949 aa9.17□□□□□ -0.94
CD44-201ENST00000263398 PMCHL1Q16048 86 aa9.17□□□□□ -0.94
CD44-201ENST00000263398 NRN1LQ496H8 165 aa9.17□□□□□ -0.94
CD44-201ENST00000263398 SPANXN1Q5VSR9 72 aa9.17□□□□□ -0.94
CD44-201ENST00000263398 WDR31Q8NA23 367 aa9.17□□□□□ -0.94
CD44-201ENST00000263398 RCC1LQ96I51 464 aaKnown RBP9.17□□□□□ -0.94
CD44-201ENST00000263398 ZNF236Q9UL36 1845 aa9.17□□□□□ -0.94
CD44-201ENST00000263398 PDCD11Q14690 1871 aaKnown RBP9.17□□□□□ -0.94
CD44-201ENST00000263398 ARHGEF17Q96PE2 2063 aaPredicted RBP9.17□□□□□ -0.94
CD44-201ENST00000263398 ZNF729A6NN14 1252 aaPredicted RBP9.17□□□□□ -0.94
CD44-201ENST00000263398 SLC25A17O43808 307 aa9.17□□□□□ -0.94
CD44-201ENST00000263398 EIF3GO75821 320 aaKnown RBP eCLIP9.17□□□□□ -0.94
CD44-201ENST00000263398 RFPL3SP0C7P2 107 aa9.17□□□□□ -0.94
CD44-201ENST00000263398 TRGC1P0CF51 173 aa9.17□□□□□ -0.94
CD44-201ENST00000263398 SSTR5P35346 364 aa9.17□□□□□ -0.94
CD44-201ENST00000263398 ABHD12Q8N2K0 398 aa9.17□□□□□ -0.94
CD44-201ENST00000263398 TIMP4Q99727 224 aa9.17□□□□□ -0.94
CD44-201ENST00000263398 MRPL18Q9H0U6 180 aaKnown RBP9.17□□□□□ -0.94
CD44-201ENST00000263398 MED12Q93074 2177 aa9.17□□□□□ -0.94
CD44-201ENST00000263398 Q6ZT83 130 aa9.17□□□□□ -0.94
CD44-201ENST00000263398 CRIPAKQ8N1N5 446 aa9.17□□□□□ -0.94
CD44-201ENST00000263398 GATAD1Q8WUU5 269 aa9.17□□□□□ -0.94
CD44-201ENST00000263398 RTBDNQ9BSG5 229 aaPredicted RBP9.17□□□□□ -0.94
CD44-201ENST00000263398 METTL1Q9UBP6 276 aaKnown RBP9.17□□□□□ -0.94
CD44-201ENST00000263398 J3KRW8 73 aa9.16□□□□□ -0.94
CD44-201ENST00000263398 UCNP55089 124 aa9.16□□□□□ -0.94
CD44-201ENST00000263398 CLDN18P56856 261 aa9.16□□□□□ -0.94
CD44-201ENST00000263398 EFNB1P98172 346 aa9.16□□□□□ -0.94
CD44-201ENST00000263398 SHISA5Q8N114 240 aa9.16□□□□□ -0.94
CD44-201ENST00000263398 OR51G1Q8NGK1 321 aa9.16□□□□□ -0.94
CD44-201ENST00000263398 GDF15Q99988 308 aa9.16□□□□□ -0.94
CD44-201ENST00000263398 UBTD1Q9HAC8 227 aa9.16□□□□□ -0.94
CD44-201ENST00000263398 ZFP30Q9Y2G7 519 aa9.16□□□□□ -0.94
CD44-201ENST00000263398 KCNMB2Q9Y691 235 aa9.16□□□□□ -0.94
CD44-201ENST00000263398 TMEM189A5PLL7 270 aa9.16□□□□□ -0.94
CD44-201ENST00000263398 ZIC3O60481 467 aa9.16□□□□□ -0.94
CD44-201ENST00000263398 CRYBB3P26998 211 aa9.16□□□□□ -0.94
CD44-201ENST00000263398 NUBP1P53384 320 aa9.16□□□□□ -0.94
CD44-201ENST00000263398 SLC25A53Q5H9E4 307 aa9.16□□□□□ -0.94
CD44-201ENST00000263398 OR4C13Q8NGP0 309 aa9.16□□□□□ -0.94
CD44-201ENST00000263398 HSPB7Q9UBY9 170 aa9.16□□□□□ -0.94
CD44-201ENST00000263398 TRAV14DV4A0A0A6YYC5 116 aa9.16□□□□□ -0.94
CD44-201ENST00000263398 KLF7O75840 302 aaPredicted RBP9.16□□□□□ -0.94
CD44-201ENST00000263398 VENTXO95231 258 aa9.16□□□□□ -0.94
CD44-201ENST00000263398 LYPD3O95274 346 aa9.16□□□□□ -0.94
CD44-201ENST00000263398 DDTP30046 118 aa9.16□□□□□ -0.94
CD44-201ENST00000263398 KIR2DL2P43627 348 aaPredicted RBP9.16□□□□□ -0.94
CD44-201ENST00000263398 SRSF9Q13242 221 aaKnown RBP eCLIP9.16□□□□□ -0.94
CD44-201ENST00000263398 RBPMS2Q6ZRY4 209 aaKnown RBP9.16□□□□□ -0.94
CD44-201ENST00000263398 PRR7Q8TB68 274 aa9.16□□□□□ -0.94
CD44-201ENST00000263398 NABP2Q9BQ15 211 aa9.16□□□□□ -0.94
CD44-201ENST00000263398 ELOVL1Q9BW60 279 aa9.16□□□□□ -0.94
CD44-201ENST00000263398 MRPL13Q9BYD1 178 aaKnown RBP9.16□□□□□ -0.94
CD44-201ENST00000263398 COLQQ9Y215 455 aaPredicted RBP9.16□□□□□ -0.94
CD44-201ENST00000263398 CA7P43166 264 aa9.15□□□□□ -0.94
CD44-201ENST00000263398 RELBQ01201 579 aa9.15□□□□□ -0.94
CD44-201ENST00000263398 OR9G1Q8NH87 305 aa9.15□□□□□ -0.94
CD44-201ENST00000263398 TMEM171Q8WVE6 324 aa9.15□□□□□ -0.94
CD44-201ENST00000263398 COL25A1Q9BXS0 654 aaPredicted RBP9.15□□□□□ -0.94
CD44-201ENST00000263398 RABAC1Q9UI14 185 aa9.15□□□□□ -0.94
CD44-201ENST00000263398 HILPDAQ9Y5L2 63 aa9.15□□□□□ -0.94
CD44-201ENST00000263398 CENPFP49454 3210 aa9.15□□□□□ -0.94
CD44-201ENST00000263398 ZSWIM8A7E2V4 1837 aa9.15□□□□□ -0.94
CD44-201ENST00000263398 J3QRE1 110 aa9.15□□□□□ -0.94
CD44-201ENST00000263398 NPIPB7O75200 414 aa9.15□□□□□ -0.94
CD44-201ENST00000263398 ZNF703Q9H7S9 590 aaPredicted RBP9.15□□□□□ -0.94
CD44-201ENST00000263398 FREM3P0C091 2139 aa9.15□□□□□ -0.94
CD44-201ENST00000263398 MGAMO43451 1857 aa9.15□□□□□ -0.94
CD44-201ENST00000263398 IGLV3-12A0A075B6K2 115 aa9.15□□□□□ -0.94
CD44-201ENST00000263398 FAM209BQ5JX69 171 aa9.15□□□□□ -0.94
CD44-201ENST00000263398 ABLIM2Q6H8Q1 611 aa9.15□□□□□ -0.94
CD44-201ENST00000263398 TMEM186Q96B77 213 aa9.15□□□□□ -0.94
CD44-201ENST00000263398 REPIN1Q9BWE0 567 aaKnown RBP9.15□□□□□ -0.94
CD44-201ENST00000263398 AKIRIN1Q9H9L7 192 aaPredicted RBP9.15□□□□□ -0.94
CD44-201ENST00000263398 CACNA1GO43497 2377 aa9.15□□□□□ -0.94
CD44-201ENST00000263398 PQLC2LA1A4F0 135 aa9.15□□□□□ -0.95
CD44-201ENST00000263398 MGPP08493 103 aa9.15□□□□□ -0.95
CD44-201ENST00000263398 COTL1Q14019 142 aa9.15□□□□□ -0.95
CD44-201ENST00000263398 ZNF146Q15072 292 aa9.15□□□□□ -0.95
CD44-201ENST00000263398 RSPO4Q2I0M5 234 aaPredicted RBP9.15□□□□□ -0.95
CD44-201ENST00000263398 TMEM78Q5T7P6 136 aa9.15□□□□□ -0.95
CD44-201ENST00000263398 FADS6Q8N9I5 356 aa9.15□□□□□ -0.95
CD44-201ENST00000263398 IMMP1LQ96LU5 166 aa9.15□□□□□ -0.95
CD44-201ENST00000263398 ATG101Q9BSB4 218 aa9.15□□□□□ -0.95
CD44-201ENST00000263398 DCAF16Q9NXF7 216 aa9.15□□□□□ -0.95
CD44-201ENST00000263398 MTCL1Q9Y4B5 1905 aaKnown RBP9.15□□□□□ -0.95
CD44-201ENST00000263398 DNAH12Q6ZR08 3092 aa9.14□□□□□ -0.95
CD44-201ENST00000263398 C12orf77C9JDV5 145 aa9.14□□□□□ -0.95
CD44-201ENST00000263398 LEPROTL1O95214 131 aa9.14□□□□□ -0.95
CD44-201ENST00000263398 C1QTNF5Q9BXJ0 243 aa9.14□□□□□ -0.95
CD44-201ENST00000263398 GLRXP35754 106 aa9.14□□□□□ -0.95
CD44-201ENST00000263398 PSMB2P49721 201 aa9.14□□□□□ -0.95
CD44-201ENST00000263398 GAS1P54826 345 aa9.14□□□□□ -0.95
CD44-201ENST00000263398 DLX1P56177 255 aa9.14□□□□□ -0.95
CD44-201ENST00000263398 ZNF738Q8NE65 137 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms