RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 CCDC186Q7Z3E2 898 aa16.88■□□□□ 0.29
SHROOM1-208ENST00000617339 TNMDQ9H2S6 317 aa16.88■□□□□ 0.29
SHROOM1-208ENST00000617339 GOLGA6L6A8MZA4 724 aa16.87■□□□□ 0.29
SHROOM1-208ENST00000617339 C3orf67Q6ZVT6 689 aa16.87■□□□□ 0.29
SHROOM1-208ENST00000617339 NBPF5PQ86XG9 351 aaPredicted RBP16.87■□□□□ 0.29
SHROOM1-208ENST00000617339 SDR42E1Q8WUS8 393 aa16.87■□□□□ 0.29
SHROOM1-208ENST00000617339 NRBP1Q9UHY1 535 aa16.87■□□□□ 0.29
SHROOM1-208ENST00000617339 ERFEQ4G0M1 354 aa16.87■□□□□ 0.29
SHROOM1-208ENST00000617339 LUZP1Q86V48 1076 aa16.87■□□□□ 0.29
SHROOM1-208ENST00000617339 AK7Q96M32 723 aa16.87■□□□□ 0.29
SHROOM1-208ENST00000617339 TMEM51Q9NW97 253 aa16.87■□□□□ 0.29
SHROOM1-208ENST00000617339 ALS2Q96Q42 1657 aa16.86■□□□□ 0.29
SHROOM1-208ENST00000617339 NR1I2O75469 434 aa16.86■□□□□ 0.29
SHROOM1-208ENST00000617339 PDIA3P30101 505 aaKnown RBP16.86■□□□□ 0.29
SHROOM1-208ENST00000617339 RFC4P35249 363 aa16.86■□□□□ 0.29
SHROOM1-208ENST00000617339 TNNT1P13805 278 aa16.86■□□□□ 0.29
SHROOM1-208ENST00000617339 RASGRF1Q13972 1273 aa16.86■□□□□ 0.29
SHROOM1-208ENST00000617339 INTS5Q6P9B9 1019 aaKnown RBP16.86■□□□□ 0.29
SHROOM1-208ENST00000617339 ANKRD7Q92527 254 aa16.86■□□□□ 0.29
SHROOM1-208ENST00000617339 NAPBQ9H115 298 aa16.86■□□□□ 0.29
SHROOM1-208ENST00000617339 ORC3Q9UBD5 711 aaPredicted RBP16.86■□□□□ 0.29
SHROOM1-208ENST00000617339 APPBP2Q92624 585 aa16.85■□□□□ 0.29
SHROOM1-208ENST00000617339 NUP62CLQ9H1M0 184 aa16.85■□□□□ 0.29
SHROOM1-208ENST00000617339 CCNL1Q9UK58 526 aaPredicted RBP16.85■□□□□ 0.29
SHROOM1-208ENST00000617339 ZNF652Q9Y2D9 606 aa16.85■□□□□ 0.29
SHROOM1-208ENST00000617339 KIF1AQ12756 1690 aa16.85■□□□□ 0.29
SHROOM1-208ENST00000617339 CYP2D7A0A087X1C5 515 aa16.85■□□□□ 0.29
SHROOM1-208ENST00000617339 PDE6AP16499 860 aa16.85■□□□□ 0.29
SHROOM1-208ENST00000617339 LEO1Q8WVC0 666 aaPredicted RBP16.85■□□□□ 0.29
SHROOM1-208ENST00000617339 OGFRQ9NZT2 677 aa16.85■□□□□ 0.29
SHROOM1-208ENST00000617339 TPD52L1Q16890 204 aaPredicted RBP16.85■□□□□ 0.29
SHROOM1-208ENST00000617339 GPR101Q96P66 508 aaPredicted RBP16.85■□□□□ 0.29
SHROOM1-208ENST00000617339 BIN1O00499 593 aa16.84■□□□□ 0.29
SHROOM1-208ENST00000617339 CSF1RP07333 972 aa16.84■□□□□ 0.29
SHROOM1-208ENST00000617339 MARCKSP29966 332 aaPredicted RBP16.84■□□□□ 0.29
SHROOM1-208ENST00000617339 IL6STP40189 918 aaPredicted RBP16.84■□□□□ 0.29
SHROOM1-208ENST00000617339 NSUN7Q8NE18 718 aaKnown RBP16.84■□□□□ 0.29
SHROOM1-208ENST00000617339 CTDNEP1O95476 244 aa16.84■□□□□ 0.29
SHROOM1-208ENST00000617339 USPL1Q5W0Q7 1092 aa16.84■□□□□ 0.29
SHROOM1-208ENST00000617339 SPATA5Q8NB90 893 aa16.84■□□□□ 0.29
SHROOM1-208ENST00000617339 TRIM5Q9C035 493 aa16.84■□□□□ 0.29
SHROOM1-208ENST00000617339 TULP1O00294 542 aaPredicted RBP16.84■□□□□ 0.29
SHROOM1-208ENST00000617339 CIAO1O76071 339 aa16.84■□□□□ 0.29
SHROOM1-208ENST00000617339 SLC5A1P13866 664 aa16.84■□□□□ 0.29
SHROOM1-208ENST00000617339 LRRFIP1Q32MZ4 808 aaKnown RBP16.84■□□□□ 0.29
SHROOM1-208ENST00000617339 USP28Q96RU2 1077 aa16.84■□□□□ 0.29
SHROOM1-208ENST00000617339 TMX4Q9H1E5 349 aaPredicted RBP16.84■□□□□ 0.29
SHROOM1-208ENST00000617339 ANKIB1Q9P2G1 1089 aa16.84■□□□□ 0.29
SHROOM1-208ENST00000617339 SLC4A4Q9Y6R1 1079 aa16.83■□□□□ 0.29
SHROOM1-208ENST00000617339 CHRNDQ07001 517 aa16.83■□□□□ 0.28
SHROOM1-208ENST00000617339 TBC1D10CQ8IV04 446 aa16.83■□□□□ 0.28
SHROOM1-208ENST00000617339 CCDC112Q8NEF3 446 aa16.83■□□□□ 0.28
SHROOM1-208ENST00000617339 NCOA7Q8NI08 942 aa16.83■□□□□ 0.28
SHROOM1-208ENST00000617339 CTNNA3Q9UI47 895 aa16.83■□□□□ 0.28
SHROOM1-208ENST00000617339 EIF5P55010 431 aaKnown RBP16.83■□□□□ 0.28
SHROOM1-208ENST00000617339 DSCC1Q9BVC3 393 aa16.83■□□□□ 0.28
SHROOM1-208ENST00000617339 A0A1B0GVL5 298 aa16.82■□□□□ 0.28
SHROOM1-208ENST00000617339 CYP7A1P22680 504 aa16.82■□□□□ 0.28
SHROOM1-208ENST00000617339 PUM3Q15397 648 aaKnown RBP16.82■□□□□ 0.28
SHROOM1-208ENST00000617339 C8orf76Q96K31 380 aa16.82■□□□□ 0.28
SHROOM1-208ENST00000617339 SETDB2Q96T68 719 aa16.82■□□□□ 0.28
SHROOM1-208ENST00000617339 DNAJC25Q9H1X3 360 aa16.82■□□□□ 0.28
SHROOM1-208ENST00000617339 IFIT3O14879 490 aaKnown RBP16.82■□□□□ 0.28
SHROOM1-208ENST00000617339 EPB41L2O43491 1005 aaKnown RBP16.82■□□□□ 0.28
SHROOM1-208ENST00000617339 CCDC152Q4G0S7 254 aa16.82■□□□□ 0.28
SHROOM1-208ENST00000617339 PGBD1Q96JS3 809 aa16.82■□□□□ 0.28
SHROOM1-208ENST00000617339 SDF4Q9BRK5 362 aa16.82■□□□□ 0.28
SHROOM1-208ENST00000617339 MAP3K12Q12852 859 aa16.82■□□□□ 0.28
SHROOM1-208ENST00000617339 SCN11AQ9UI33 1791 aa16.81■□□□□ 0.28
SHROOM1-208ENST00000617339 CCDC192P0DO97 292 aa16.81■□□□□ 0.28
SHROOM1-208ENST00000617339 CYB5R4Q7L1T6 521 aa16.81■□□□□ 0.28
SHROOM1-208ENST00000617339 KCNB2Q92953 911 aa16.81■□□□□ 0.28
SHROOM1-208ENST00000617339 SPATA31A1Q5TZJ5 1347 aa16.81■□□□□ 0.28
SHROOM1-208ENST00000617339 PALLDQ8WX93 1383 aa16.81■□□□□ 0.28
SHROOM1-208ENST00000617339 FOXP2O15409 715 aa16.81■□□□□ 0.28
SHROOM1-208ENST00000617339 KLRK1P26718 216 aa16.81■□□□□ 0.28
SHROOM1-208ENST00000617339 TRIM28Q13263 835 aaKnown RBP16.81■□□□□ 0.28
SHROOM1-208ENST00000617339 MAP3K11Q16584 847 aa16.81■□□□□ 0.28
SHROOM1-208ENST00000617339 ANO6Q4KMQ2 910 aa16.81■□□□□ 0.28
SHROOM1-208ENST00000617339 TMEM67Q5HYA8 995 aa16.81■□□□□ 0.28
SHROOM1-208ENST00000617339 SPECC1Q5M775 1068 aa16.81■□□□□ 0.28
SHROOM1-208ENST00000617339 CCAR1Q8IX12 1150 aaKnown RBP16.81■□□□□ 0.28
SHROOM1-208ENST00000617339 LPIN2Q92539 896 aa16.81■□□□□ 0.28
SHROOM1-208ENST00000617339 CELF1Q92879 486 aaKnown RBP16.81■□□□□ 0.28
SHROOM1-208ENST00000617339 FEZ1Q99689 392 aa16.81■□□□□ 0.28
SHROOM1-208ENST00000617339 ST7Q9NRC1 585 aa16.81■□□□□ 0.28
SHROOM1-208ENST00000617339 STK38Q15208 465 aa16.81■□□□□ 0.28
SHROOM1-208ENST00000617339 SAMD1Q6SPF0 538 aaPredicted RBP16.81■□□□□ 0.28
SHROOM1-208ENST00000617339 GPR108Q9NPR9 543 aa16.81■□□□□ 0.28
SHROOM1-208ENST00000617339 ZRSR1Q15695 479 aaKnown RBP16.8■□□□□ 0.28
SHROOM1-208ENST00000617339 LCORLQ8N3X6 602 aa16.8■□□□□ 0.28
SHROOM1-208ENST00000617339 PHRF1Q9P1Y6 1649 aaKnown RBP16.8■□□□□ 0.28
SHROOM1-208ENST00000617339 HMGB1P09429 215 aaKnown RBP16.8■□□□□ 0.28
SHROOM1-208ENST00000617339 ADD2P35612 726 aa16.8■□□□□ 0.28
SHROOM1-208ENST00000617339 DYNLL1P63167 89 aaKnown RBP16.8■□□□□ 0.28
SHROOM1-208ENST00000617339 SCAND2PQ9GZW5 306 aaPredicted RBP16.8■□□□□ 0.28
SHROOM1-208ENST00000617339 RTCBQ9Y3I0 505 aaKnown RBP16.8■□□□□ 0.28
SHROOM1-208ENST00000617339 CTIFO43310 598 aaKnown RBP16.79■□□□□ 0.28
SHROOM1-208ENST00000617339 ZNF34Q8IZ26 560 aa16.79■□□□□ 0.28
SHROOM1-208ENST00000617339 LINC00116Q8NCU8 138 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms