RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 A0A0G2JLW4 131 aa14.46□□□□□ -0.09
LIG1-221ENST00000613670 LINC00301Q8NCQ3 95 aa14.46□□□□□ -0.09
LIG1-221ENST00000613670 HELBQ8NG08 1087 aaPredicted RBP14.46□□□□□ -0.09
LIG1-221ENST00000613670 DSCC1Q9BVC3 393 aa14.46□□□□□ -0.09
LIG1-221ENST00000613670 PUS3Q9BZE2 481 aaKnown RBP14.46□□□□□ -0.09
LIG1-221ENST00000613670 CARMIL3Q8ND23 1372 aa14.46□□□□□ -0.09
LIG1-221ENST00000613670 DLC1Q96QB1 1528 aa14.46□□□□□ -0.1
LIG1-221ENST00000613670 TERF2Q15554 542 aa14.46□□□□□ -0.1
LIG1-221ENST00000613670 KRT40Q6A162 431 aa14.46□□□□□ -0.1
LIG1-221ENST00000613670 VPS37DQ86XT2 251 aa14.46□□□□□ -0.1
LIG1-221ENST00000613670 FBXO18Q8NFZ0 1043 aa14.46□□□□□ -0.1
LIG1-221ENST00000613670 ZNF274Q96GC6 653 aaPredicted RBP14.46□□□□□ -0.1
LIG1-221ENST00000613670 FAM89AQ96GI7 184 aa14.46□□□□□ -0.1
LIG1-221ENST00000613670 EPC1Q9H2F5 836 aa14.46□□□□□ -0.1
LIG1-221ENST00000613670 ABCF2Q9UG63 623 aa14.46□□□□□ -0.1
LIG1-221ENST00000613670 KCNH3Q9ULD8 1083 aa14.46□□□□□ -0.1
LIG1-221ENST00000613670 USP42Q9H9J4 1324 aaKnown RBP14.45□□□□□ -0.1
LIG1-221ENST00000613670 CEP170BQ9Y4F5 1589 aaPredicted RBP14.45□□□□□ -0.1
LIG1-221ENST00000613670 GPAA1O43292 621 aa14.45□□□□□ -0.1
LIG1-221ENST00000613670 SARM1Q6SZW1 724 aa14.45□□□□□ -0.1
LIG1-221ENST00000613670 YEATS4O95619 227 aa14.45□□□□□ -0.1
LIG1-221ENST00000613670 FGAP02671 866 aa14.45□□□□□ -0.1
LIG1-221ENST00000613670 ZAP70P43403 619 aa14.45□□□□□ -0.1
LIG1-221ENST00000613670 PPP2R3AQ06190 1150 aa14.45□□□□□ -0.1
LIG1-221ENST00000613670 DHX40Q8IX18 779 aaKnown RBP14.45□□□□□ -0.1
LIG1-221ENST00000613670 DHX58Q96C10 678 aa14.45□□□□□ -0.1
LIG1-221ENST00000613670 RTEL1Q9NZ71 1219 aa14.45□□□□□ -0.1
LIG1-221ENST00000613670 NFE2L3Q9Y4A8 694 aa14.45□□□□□ -0.1
LIG1-221ENST00000613670 ZBTB22O15209 634 aa14.45□□□□□ -0.1
LIG1-221ENST00000613670 EIF3JO75822 258 aaKnown RBP14.45□□□□□ -0.1
LIG1-221ENST00000613670 RHOXF2BP0C7M4 288 aa14.45□□□□□ -0.1
LIG1-221ENST00000613670 CLCN6P51797 869 aa14.45□□□□□ -0.1
LIG1-221ENST00000613670 TTLL7Q6ZT98 887 aa14.45□□□□□ -0.1
LIG1-221ENST00000613670 RHOXF2Q9BQY4 288 aa14.45□□□□□ -0.1
LIG1-221ENST00000613670 NACAP1Q9BZK3 213 aa14.45□□□□□ -0.1
LIG1-221ENST00000613670 ACBD3Q9H3P7 528 aa14.45□□□□□ -0.1
LIG1-221ENST00000613670 PRDM11Q9NQV5 511 aa14.45□□□□□ -0.1
LIG1-221ENST00000613670 MAST3O60307 1309 aa14.44□□□□□ -0.1
LIG1-221ENST00000613670 KNDC1Q76NI1 1749 aa14.44□□□□□ -0.1
LIG1-221ENST00000613670 SRRTQ9BXP5 876 aaKnown RBP14.44□□□□□ -0.1
LIG1-221ENST00000613670 RAI14Q9P0K7 980 aa14.44□□□□□ -0.1
LIG1-221ENST00000613670 ZFYP08048 801 aaPredicted RBP14.44□□□□□ -0.1
LIG1-221ENST00000613670 GTF2E1P29083 439 aaPredicted RBP14.44□□□□□ -0.1
LIG1-221ENST00000613670 SYCP1Q15431 976 aa14.44□□□□□ -0.1
LIG1-221ENST00000613670 AXDND1Q5T1B0 1012 aaPredicted RBP14.44□□□□□ -0.1
LIG1-221ENST00000613670 PI16Q6UXB8 463 aa14.44□□□□□ -0.1
LIG1-221ENST00000613670 XAGE2Q96GT9 111 aa14.44□□□□□ -0.1
LIG1-221ENST00000613670 BRMS1Q9HCU9 246 aa14.44□□□□□ -0.1
LIG1-221ENST00000613670 POLR2DO15514 142 aaKnown RBP14.44□□□□□ -0.1
LIG1-221ENST00000613670 CCZ1BP86790 482 aa14.44□□□□□ -0.1
LIG1-221ENST00000613670 CCZ1P86791 482 aaPredicted RBP14.44□□□□□ -0.1
LIG1-221ENST00000613670 WASF1Q92558 559 aa14.44□□□□□ -0.1
LIG1-221ENST00000613670 KAZALD1Q96I82 304 aa14.44□□□□□ -0.1
LIG1-221ENST00000613670 NUP88Q99567 741 aaPredicted RBP14.44□□□□□ -0.1
LIG1-221ENST00000613670 LRP2BPQ9P2M1 347 aa14.44□□□□□ -0.1
LIG1-221ENST00000613670 PLBD2Q8NHP8 589 aa14.43□□□□□ -0.1
LIG1-221ENST00000613670 TMEM131LA2VDJ0 1609 aa14.43□□□□□ -0.1
LIG1-221ENST00000613670 OSBP2Q969R2 916 aa14.43□□□□□ -0.1
LIG1-221ENST00000613670 NRKQ7Z2Y5 1582 aa14.43□□□□□ -0.1
LIG1-221ENST00000613670 KAT6BQ8WYB5 2073 aa14.43□□□□□ -0.1
LIG1-221ENST00000613670 GOLGA6L9A6NEM1 432 aa14.43□□□□□ -0.1
LIG1-221ENST00000613670 ZNF569Q5MCW4 686 aa14.43□□□□□ -0.1
LIG1-221ENST00000613670 MPHOSPH8Q99549 860 aa14.43□□□□□ -0.1
LIG1-221ENST00000613670 KCNJ14Q9UNX9 436 aa14.43□□□□□ -0.1
LIG1-221ENST00000613670 IQSEC3Q9UPP2 1182 aaPredicted RBP14.43□□□□□ -0.1
LIG1-221ENST00000613670 M0R2C6 588 aa14.42□□□□□ -0.1
LIG1-221ENST00000613670 OAS2P29728 719 aaKnown RBP14.42□□□□□ -0.1
LIG1-221ENST00000613670 ADORA1P30542 326 aa14.42□□□□□ -0.1
LIG1-221ENST00000613670 KRBA2Q6ZNG9 492 aa14.42□□□□□ -0.1
LIG1-221ENST00000613670 FMR1NBQ8N0W7 255 aaPredicted RBP14.42□□□□□ -0.1
LIG1-221ENST00000613670 CMTR1Q8N1G2 835 aaKnown RBP14.42□□□□□ -0.1
LIG1-221ENST00000613670 GOLGA1Q92805 767 aa14.42□□□□□ -0.1
LIG1-221ENST00000613670 ANGEL1Q9UNK9 670 aaKnown RBP14.42□□□□□ -0.1
LIG1-221ENST00000613670 PCDHA5Q9Y5H7 936 aa14.42□□□□□ -0.1
LIG1-221ENST00000613670 CCDC175P0C221 793 aa14.42□□□□□ -0.1
LIG1-221ENST00000613670 NAP1L1P55209 391 aaKnown RBP14.42□□□□□ -0.1
LIG1-221ENST00000613670 ZMYM1Q5SVZ6 1142 aa14.42□□□□□ -0.1
LIG1-221ENST00000613670 DDX17Q92841 729 aaKnown RBP14.42□□□□□ -0.1
LIG1-221ENST00000613670 VPS18Q9P253 973 aa14.42□□□□□ -0.1
LIG1-221ENST00000613670 N4BP3O15049 544 aa14.42□□□□□ -0.1
LIG1-221ENST00000613670 ARMCX5Q6P1M9 558 aa14.42□□□□□ -0.1
LIG1-221ENST00000613670 KRI1Q8N9T8 703 aaKnown RBP14.42□□□□□ -0.1
LIG1-221ENST00000613670 CCDC191Q8NCU4 936 aa14.42□□□□□ -0.1
LIG1-221ENST00000613670 A0A1W2PQ27 194 aa14.41□□□□□ -0.1
LIG1-221ENST00000613670 A0A1W2PQ64 194 aa14.41□□□□□ -0.1
LIG1-221ENST00000613670 A0A1W2PQD8 194 aa14.41□□□□□ -0.1
LIG1-221ENST00000613670 PSDA5PKW4 1024 aaPredicted RBP14.41□□□□□ -0.1
LIG1-221ENST00000613670 ARHGAP6O43182 974 aa14.41□□□□□ -0.1
LIG1-221ENST00000613670 CMA1P23946 247 aa14.41□□□□□ -0.1
LIG1-221ENST00000613670 E4F1Q66K89 784 aaPredicted RBP14.41□□□□□ -0.1
LIG1-221ENST00000613670 C10orf67Q8IYJ2 551 aa14.41□□□□□ -0.1
LIG1-221ENST00000613670 STAMQ92783 540 aa14.41□□□□□ -0.1
LIG1-221ENST00000613670 MORC2Q9Y6X9 1032 aaPredicted RBP14.41□□□□□ -0.1
LIG1-221ENST00000613670 CCDC70Q6NSX1 233 aa14.41□□□□□ -0.1
LIG1-221ENST00000613670 APPBP2Q92624 585 aa14.41□□□□□ -0.1
LIG1-221ENST00000613670 TRMT112Q9UI30 125 aaKnown RBP14.41□□□□□ -0.1
LIG1-221ENST00000613670 PPP2R2CQ9Y2T4 447 aa14.41□□□□□ -0.1
LIG1-221ENST00000613670 RBM6P78332 1123 aaKnown RBP14.41□□□□□ -0.1
LIG1-221ENST00000613670 SMARCC2Q8TAQ2 1214 aa14.41□□□□□ -0.1
LIG1-221ENST00000613670 ZCCHC17Q9NP64 241 aaKnown RBP14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms