RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 SRGAP3O43295 1099 aa14.31□□□□□ -0.12
LINC00539-204ENST00000608957 ADORA1P30542 326 aa14.31□□□□□ -0.12
LINC00539-204ENST00000608957 IL15P40933 162 aaPredicted RBP14.31□□□□□ -0.12
LINC00539-204ENST00000608957 CTCFP49711 727 aaPredicted RBP14.31□□□□□ -0.12
LINC00539-204ENST00000608957 MVPQ14764 893 aaKnown RBP14.31□□□□□ -0.12
LINC00539-204ENST00000608957 RASAL3Q86YV0 1011 aa14.31□□□□□ -0.12
LINC00539-204ENST00000608957 AIDAQ96BJ3 306 aa14.31□□□□□ -0.12
LINC00539-204ENST00000608957 CEP126Q9P2H0 1117 aa14.31□□□□□ -0.12
LINC00539-204ENST00000608957 HDAC5Q9UQL6 1122 aa14.31□□□□□ -0.12
LINC00539-204ENST00000608957 MYO5AQ9Y4I1 1855 aaKnown RBP14.31□□□□□ -0.12
LINC00539-204ENST00000608957 GNAI2P04899 355 aa14.3□□□□□ -0.12
LINC00539-204ENST00000608957 PHKA1P46020 1223 aa14.3□□□□□ -0.12
LINC00539-204ENST00000608957 CRKP46108 304 aa14.3□□□□□ -0.12
LINC00539-204ENST00000608957 ZNF157P51786 506 aaPredicted RBP14.3□□□□□ -0.12
LINC00539-204ENST00000608957 DEFB129Q9H1M3 183 aa14.3□□□□□ -0.12
LINC00539-204ENST00000608957 PRDM10Q9NQV6 1147 aa14.3□□□□□ -0.12
LINC00539-204ENST00000608957 TSKSQ9UJT2 592 aa14.3□□□□□ -0.12
LINC00539-204ENST00000608957 SERPINA10Q9UK55 444 aa14.3□□□□□ -0.12
LINC00539-204ENST00000608957 RBM5P52756 815 aaKnown RBP eCLIP14.29□□□□□ -0.12
LINC00539-204ENST00000608957 FKBP1BP68106 108 aa14.29□□□□□ -0.12
LINC00539-204ENST00000608957 TFCP2Q12800 502 aa14.29□□□□□ -0.12
LINC00539-204ENST00000608957 NOGQ13253 232 aa14.29□□□□□ -0.12
LINC00539-204ENST00000608957 PRKG1Q13976 671 aa14.29□□□□□ -0.12
LINC00539-204ENST00000608957 SPDYE2Q495Y8 402 aa14.29□□□□□ -0.12
LINC00539-204ENST00000608957 B4GALNT3Q6L9W6 998 aa14.29□□□□□ -0.12
LINC00539-204ENST00000608957 ITPRIPQ8IWB1 547 aa14.29□□□□□ -0.12
LINC00539-204ENST00000608957 CDAN1Q8IWY9 1227 aa14.29□□□□□ -0.12
LINC00539-204ENST00000608957 CCDC136Q96JN2 1154 aa14.29□□□□□ -0.12
LINC00539-204ENST00000608957 TDRD3Q9H7E2 651 aaKnown RBP14.29□□□□□ -0.12
LINC00539-204ENST00000608957 C1orf115Q9H7X2 142 aa14.29□□□□□ -0.12
LINC00539-204ENST00000608957 VEZTQ9HBM0 779 aa14.29□□□□□ -0.12
LINC00539-204ENST00000608957 ZNF70Q9UC06 446 aaPredicted RBP14.29□□□□□ -0.12
LINC00539-204ENST00000608957 FRAT2O75474 233 aaPredicted RBP14.28□□□□□ -0.12
LINC00539-204ENST00000608957 TIMM10P62072 90 aa14.28□□□□□ -0.12
LINC00539-204ENST00000608957 KIF23Q02241 960 aaPredicted RBP14.28□□□□□ -0.12
LINC00539-204ENST00000608957 AAMPQ13685 434 aa14.28□□□□□ -0.12
LINC00539-204ENST00000608957 AK9Q5TCS8 1911 aa14.28□□□□□ -0.12
LINC00539-204ENST00000608957 TBC1D22AQ8WUA7 517 aa14.28□□□□□ -0.12
LINC00539-204ENST00000608957 DDX19BQ9UMR2 479 aa14.28□□□□□ -0.12
LINC00539-204ENST00000608957 ZBTB7BO15156 539 aaPredicted RBP14.27□□□□□ -0.13
LINC00539-204ENST00000608957 POLA2Q14181 598 aa14.27□□□□□ -0.13
LINC00539-204ENST00000608957 NBPF12Q5TAG4 269 aaPredicted RBP14.27□□□□□ -0.13
LINC00539-204ENST00000608957 TNS4Q8IZW8 715 aa14.27□□□□□ -0.13
LINC00539-204ENST00000608957 CCDC102AQ96A19 550 aa14.27□□□□□ -0.13
LINC00539-204ENST00000608957 PPP2R3BQ9Y5P8 575 aa14.27□□□□□ -0.13
LINC00539-204ENST00000608957 A0A1B0GUL7 405 aa14.26□□□□□ -0.13
LINC00539-204ENST00000608957 MYO1BO43795 1136 aa14.26□□□□□ -0.13
LINC00539-204ENST00000608957 PRDX5P30044 214 aa14.26□□□□□ -0.13
LINC00539-204ENST00000608957 NF2P35240 595 aa14.26□□□□□ -0.13
LINC00539-204ENST00000608957 HDLBPQ00341 1268 aaKnown RBP14.26□□□□□ -0.13
LINC00539-204ENST00000608957 TTLL12Q14166 644 aaPredicted RBP14.26□□□□□ -0.13
LINC00539-204ENST00000608957 RASA3Q14644 834 aa14.26□□□□□ -0.13
LINC00539-204ENST00000608957 LDLRAD1Q5T700 205 aa14.26□□□□□ -0.13
LINC00539-204ENST00000608957 CCDC102BQ68D86 513 aa14.26□□□□□ -0.13
LINC00539-204ENST00000608957 TEPSINQ96N21 525 aa14.26□□□□□ -0.13
LINC00539-204ENST00000608957 CSRNP1Q96S65 589 aa14.26□□□□□ -0.13
LINC00539-204ENST00000608957 TCP10L2B9ZVM9 353 aa14.25□□□□□ -0.13
LINC00539-204ENST00000608957 ZBTB22O15209 634 aa14.25□□□□□ -0.13
LINC00539-204ENST00000608957 CACNB3P54284 484 aa14.25□□□□□ -0.13
LINC00539-204ENST00000608957 ATP8B2P98198 1209 aa14.25□□□□□ -0.13
LINC00539-204ENST00000608957 MAP3K11Q16584 847 aa14.25□□□□□ -0.13
LINC00539-204ENST00000608957 APOBEC3HQ6NTF7 200 aaKnown RBP14.25□□□□□ -0.13
LINC00539-204ENST00000608957 WDR66Q8TBY9 1149 aa14.25□□□□□ -0.13
LINC00539-204ENST00000608957 SSH3Q8TE77 659 aa14.25□□□□□ -0.13
LINC00539-204ENST00000608957 XAGE2Q96GT9 111 aa14.25□□□□□ -0.13
LINC00539-204ENST00000608957 ZDHHC15Q96MV8 337 aa14.25□□□□□ -0.13
LINC00539-204ENST00000608957 MRIQ9BWK5 157 aa14.25□□□□□ -0.13
LINC00539-204ENST00000608957 ANGEL1Q9UNK9 670 aaKnown RBP14.25□□□□□ -0.13
LINC00539-204ENST00000608957 SUGT1Q9Y2Z0 365 aa14.25□□□□□ -0.13
LINC00539-204ENST00000608957 SALL1Q9NSC2 1324 aa14.24□□□□□ -0.13
LINC00539-204ENST00000608957 RASGRF1Q13972 1273 aa14.24□□□□□ -0.13
LINC00539-204ENST00000608957 ARMC9Q7Z3E5 817 aa14.24□□□□□ -0.13
LINC00539-204ENST00000608957 TEKT1Q969V4 418 aa14.24□□□□□ -0.13
LINC00539-204ENST00000608957 CLMNQ96JQ2 1002 aa14.24□□□□□ -0.13
LINC00539-204ENST00000608957 BEGAINQ9BUH8 593 aa14.24□□□□□ -0.13
LINC00539-204ENST00000608957 TMEM39BQ9GZU3 492 aa14.24□□□□□ -0.13
LINC00539-204ENST00000608957 CHMP4BQ9H444 224 aaKnown RBP14.24□□□□□ -0.13
LINC00539-204ENST00000608957 CDK5RAP2Q96SN8 1893 aa14.23□□□□□ -0.13
LINC00539-204ENST00000608957 DOCK2Q92608 1830 aa14.23□□□□□ -0.13
LINC00539-204ENST00000608957 USP2O75604 605 aaPredicted RBP14.23□□□□□ -0.13
LINC00539-204ENST00000608957 MKRN3Q13064 507 aaKnown RBP14.23□□□□□ -0.13
LINC00539-204ENST00000608957 DIXDC1Q155Q3 683 aa14.23□□□□□ -0.13
LINC00539-204ENST00000608957 HHIPL2Q6UWX4 724 aa14.23□□□□□ -0.13
LINC00539-204ENST00000608957 DENND2AQ9ULE3 1009 aa14.23□□□□□ -0.13
LINC00539-204ENST00000608957 DAGLAQ9Y4D2 1042 aa14.23□□□□□ -0.13
LINC00539-204ENST00000608957 MAST3O60307 1309 aa14.22□□□□□ -0.13
LINC00539-204ENST00000608957 SEMA3EO15041 775 aa14.22□□□□□ -0.13
LINC00539-204ENST00000608957 CEP85Q6P2H3 762 aa14.22□□□□□ -0.13
LINC00539-204ENST00000608957 GNL3LQ9NVN8 582 aaKnown RBP14.22□□□□□ -0.13
LINC00539-204ENST00000608957 RNF186Q9NXI6 227 aa14.22□□□□□ -0.13
LINC00539-204ENST00000608957 AKAP2Q9Y2D5 859 aa14.22□□□□□ -0.13
LINC00539-204ENST00000608957 CA12O43570 354 aa14.21□□□□□ -0.13
LINC00539-204ENST00000608957 GJA5P36382 358 aa14.21□□□□□ -0.13
LINC00539-204ENST00000608957 G3BP1Q13283 466 aaKnown RBP eCLIP14.21□□□□□ -0.13
LINC00539-204ENST00000608957 TNFAIP1Q13829 316 aa14.21□□□□□ -0.13
LINC00539-204ENST00000608957 PI16Q6UXB8 463 aa14.21□□□□□ -0.13
LINC00539-204ENST00000608957 ZNF384Q8TF68 577 aa14.21□□□□□ -0.13
LINC00539-204ENST00000608957 NEUROD6Q96NK8 337 aa14.21□□□□□ -0.13
LINC00539-204ENST00000608957 ZBTB40Q9NUA8 1239 aa14.21□□□□□ -0.13
LINC00539-204ENST00000608957 MAST2Q6P0Q8 1798 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms