RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 DZIP1Q86YF9 867 aaKnown RBP12.22□□□□□ -0.45
UPF1-213ENST00000601981 KIAA0825Q8IV33 1275 aa12.22□□□□□ -0.45
UPF1-213ENST00000601981 GMLQ99445 158 aa12.22□□□□□ -0.45
UPF1-213ENST00000601981 NMRK2Q9NPI5 230 aa12.22□□□□□ -0.45
UPF1-213ENST00000601981 HMG20BQ9P0W2 317 aa12.22□□□□□ -0.45
UPF1-213ENST00000601981 TTF2Q9UNY4 1162 aaKnown RBP12.22□□□□□ -0.45
UPF1-213ENST00000601981 F8W031 263 aaPredicted RBP12.21□□□□□ -0.45
UPF1-213ENST00000601981 ATP5JP18859 108 aa12.21□□□□□ -0.45
UPF1-213ENST00000601981 EPS15P42566 896 aa12.21□□□□□ -0.45
UPF1-213ENST00000601981 ZNF280AP59817 542 aaPredicted RBP12.21□□□□□ -0.45
UPF1-213ENST00000601981 KIF4BQ2VIQ3 1234 aa12.21□□□□□ -0.45
UPF1-213ENST00000601981 CERS5Q8N5B7 392 aa12.21□□□□□ -0.45
UPF1-213ENST00000601981 OTUD7AQ8TE49 926 aaPredicted RBP12.21□□□□□ -0.45
UPF1-213ENST00000601981 MXD3Q9BW11 206 aa12.21□□□□□ -0.45
UPF1-213ENST00000601981 TAF1DQ9H5J8 278 aaPredicted RBP12.21□□□□□ -0.45
UPF1-213ENST00000601981 MYOZ2Q9NPC6 264 aa12.21□□□□□ -0.45
UPF1-213ENST00000601981 LRP2BPQ9P2M1 347 aa12.21□□□□□ -0.45
UPF1-213ENST00000601981 POLR2AP24928 1970 aaKnown RBP12.2□□□□□ -0.46
UPF1-213ENST00000601981 MYO1BO43795 1136 aa12.2□□□□□ -0.46
UPF1-213ENST00000601981 EIF5BO60841 1220 aaKnown RBP12.2□□□□□ -0.46
UPF1-213ENST00000601981 GLRX3O76003 335 aaKnown RBP12.2□□□□□ -0.46
UPF1-213ENST00000601981 GSPT1P15170 499 aaKnown RBP12.2□□□□□ -0.46
UPF1-213ENST00000601981 ZAP70P43403 619 aa12.2□□□□□ -0.46
UPF1-213ENST00000601981 RBM5P52756 815 aaKnown RBP eCLIP12.2□□□□□ -0.46
UPF1-213ENST00000601981 PDE1AP54750 535 aa12.2□□□□□ -0.46
UPF1-213ENST00000601981 GSTO1P78417 241 aa12.2□□□□□ -0.46
UPF1-213ENST00000601981 HDLBPQ00341 1268 aaKnown RBP12.2□□□□□ -0.46
UPF1-213ENST00000601981 EAPPQ56P03 285 aaPredicted RBP12.2□□□□□ -0.46
UPF1-213ENST00000601981 TMED8Q6PL24 325 aaPredicted RBP12.2□□□□□ -0.46
UPF1-213ENST00000601981 TEKT1Q969V4 418 aa12.2□□□□□ -0.46
UPF1-213ENST00000601981 DNAJC2Q99543 621 aaKnown RBP12.2□□□□□ -0.46
UPF1-213ENST00000601981 UPF2Q9HAU5 1272 aaKnown RBP12.2□□□□□ -0.46
UPF1-213ENST00000601981 SNRKQ9NRH2 765 aa12.2□□□□□ -0.46
UPF1-213ENST00000601981 RAI14Q9P0K7 980 aa12.2□□□□□ -0.46
UPF1-213ENST00000601981 STAP2Q9UGK3 403 aa12.2□□□□□ -0.46
UPF1-213ENST00000601981 SERPINA10Q9UK55 444 aa12.2□□□□□ -0.46
UPF1-213ENST00000601981 LDHCP07864 332 aa12.19□□□□□ -0.46
UPF1-213ENST00000601981 MAP3K12Q12852 859 aa12.19□□□□□ -0.46
UPF1-213ENST00000601981 SCARF1Q14162 830 aa12.19□□□□□ -0.46
UPF1-213ENST00000601981 DLGAP5Q15398 846 aa12.19□□□□□ -0.46
UPF1-213ENST00000601981 LRRFIP1Q32MZ4 808 aaKnown RBP12.19□□□□□ -0.46
UPF1-213ENST00000601981 TBC1D10BQ4KMP7 808 aaPredicted RBP12.19□□□□□ -0.46
UPF1-213ENST00000601981 PI16Q6UXB8 463 aa12.19□□□□□ -0.46
UPF1-213ENST00000601981 HAUS7Q99871 368 aa12.19□□□□□ -0.46
UPF1-213ENST00000601981 NOL10Q9BSC4 688 aaKnown RBP12.19□□□□□ -0.46
UPF1-213ENST00000601981 MRIQ9BWK5 157 aa12.19□□□□□ -0.46
UPF1-213ENST00000601981 BOLA2Q9H3K6 86 aa12.19□□□□□ -0.46
UPF1-213ENST00000601981 CLEC11AQ9Y240 323 aa12.19□□□□□ -0.46
UPF1-213ENST00000601981 POTECB2RU33 542 aa12.18□□□□□ -0.46
UPF1-213ENST00000601981 CDC45O75419 566 aa12.18□□□□□ -0.46
UPF1-213ENST00000601981 TOMM70O94826 608 aa12.18□□□□□ -0.46
UPF1-213ENST00000601981 PRDX5P30044 214 aa12.18□□□□□ -0.46
UPF1-213ENST00000601981 CFAP100Q494V2 611 aa12.18□□□□□ -0.46
UPF1-213ENST00000601981 RBM26Q5T8P6 1007 aaKnown RBP12.18□□□□□ -0.46
UPF1-213ENST00000601981 SAMD7Q7Z3H4 446 aa12.18□□□□□ -0.46
UPF1-213ENST00000601981 LDHDQ86WU2 507 aa12.18□□□□□ -0.46
UPF1-213ENST00000601981 ZC3H15Q8WU90 426 aaKnown RBP12.18□□□□□ -0.46
UPF1-213ENST00000601981 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.18□□□□□ -0.462e-6■■■■□ 19.5
UPF1-213ENST00000601981 PAG1Q9NWQ8 432 aa12.18□□□□□ -0.46
UPF1-213ENST00000601981 ADAMTSL1Q8N6G6 1762 aa12.18□□□□□ -0.46
UPF1-213ENST00000601981 GOLIM4O00461 696 aa12.17□□□□□ -0.46
UPF1-213ENST00000601981 IDH1O75874 414 aaKnown RBP12.17□□□□□ -0.46
UPF1-213ENST00000601981 SEC24BO95487 1268 aa12.17□□□□□ -0.46
UPF1-213ENST00000601981 CYP2E1P05181 493 aaPredicted RBP12.17□□□□□ -0.46
UPF1-213ENST00000601981 CRKP46108 304 aa12.17□□□□□ -0.46
UPF1-213ENST00000601981 APLP1P51693 650 aa12.17□□□□□ -0.46
UPF1-213ENST00000601981 ZSCAN25Q6NSZ9 544 aa12.17□□□□□ -0.46
UPF1-213ENST00000601981 HHIPL2Q6UWX4 724 aa12.17□□□□□ -0.46
UPF1-213ENST00000601981 TBC1D9Q6ZT07 1266 aa12.17□□□□□ -0.46
UPF1-213ENST00000601981 MTMR14Q8NCE2 650 aa12.17□□□□□ -0.46
UPF1-213ENST00000601981 DDRGK1Q96HY6 314 aa12.17□□□□□ -0.46
UPF1-213ENST00000601981 TMOD2Q9NZR1 351 aa12.17□□□□□ -0.46
UPF1-213ENST00000601981 SHTN1A0MZ66 631 aa12.16□□□□□ -0.46
UPF1-213ENST00000601981 MECOMQ03112 1051 aa12.16□□□□□ -0.46
UPF1-213ENST00000601981 NAA16Q6N069 864 aaPredicted RBP12.16□□□□□ -0.46
UPF1-213ENST00000601981 CHADLQ6NUI6 762 aa12.16□□□□□ -0.46
UPF1-213ENST00000601981 CERS3Q8IU89 383 aa12.16□□□□□ -0.46
UPF1-213ENST00000601981 DNAJC5GQ8N7S2 189 aa12.16□□□□□ -0.46
UPF1-213ENST00000601981 SMC1BQ8NDV3 1235 aa12.16□□□□□ -0.46
UPF1-213ENST00000601981 RBM46Q8TBY0 533 aaKnown RBP12.16□□□□□ -0.46
UPF1-213ENST00000601981 TRPM4Q8TD43 1214 aa12.16□□□□□ -0.46
UPF1-213ENST00000601981 DCPSQ96C86 337 aaKnown RBP12.16□□□□□ -0.46
UPF1-213ENST00000601981 ZDHHC15Q96MV8 337 aa12.16□□□□□ -0.46
UPF1-213ENST00000601981 TBC1D32Q96NH3 1257 aa12.16□□□□□ -0.46
UPF1-213ENST00000601981 IPO9Q96P70 1041 aaKnown RBP12.16□□□□□ -0.46
UPF1-213ENST00000601981 PITPNM2Q9BZ72 1349 aa12.15□□□□□ -0.46
UPF1-213ENST00000601981 TRPM7Q96QT4 1865 aa12.15□□□□□ -0.46
UPF1-213ENST00000601981 SPDYE2BA6NHP3 402 aa12.15□□□□□ -0.46
UPF1-213ENST00000601981 WNT10BO00744 389 aa12.15□□□□□ -0.46
UPF1-213ENST00000601981 BAG3O95817 575 aa12.15□□□□□ -0.46
UPF1-213ENST00000601981 SPDYE6P0CI01 402 aa12.15□□□□□ -0.46
UPF1-213ENST00000601981 SDSP20132 328 aa12.15□□□□□ -0.46
UPF1-213ENST00000601981 TNFAIP1Q13829 316 aa12.15□□□□□ -0.46
UPF1-213ENST00000601981 TSHZ3Q63HK5 1081 aa12.15□□□□□ -0.46
UPF1-213ENST00000601981 APOBEC3FQ8IUX4 373 aaKnown RBP12.15□□□□□ -0.46
UPF1-213ENST00000601981 PI4K2BQ8TCG2 481 aa12.15□□□□□ -0.46
UPF1-213ENST00000601981 NSUN4Q96CB9 384 aaKnown RBP12.15□□□□□ -0.46
UPF1-213ENST00000601981 PIH1D3Q9NQM4 214 aaKnown RBP12.15□□□□□ -0.46
UPF1-213ENST00000601981 NDUFB9Q9Y6M9 179 aa12.15□□□□□ -0.46
UPF1-213ENST00000601981 MROH7-TTC4A0A0A0MT08 1334 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms