RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 CERS5Q8N5B7 392 aa14.71□□□□□ -0.05
CDH3-208ENST00000569036 PRMT6Q96LA8 375 aaPredicted RBP14.71□□□□□ -0.05
CDH3-208ENST00000569036 CDX2Q99626 313 aaPredicted RBP14.71□□□□□ -0.05
CDH3-208ENST00000569036 GABRQQ9UN88 632 aa14.71□□□□□ -0.05
CDH3-208ENST00000569036 CSADQ9Y600 493 aa14.71□□□□□ -0.05
CDH3-208ENST00000569036 DDX60LQ5H9U9 1706 aaKnown RBP14.71□□□□□ -0.05
CDH3-208ENST00000569036 ADCY3O60266 1144 aa14.7□□□□□ -0.06
CDH3-208ENST00000569036 ELNP15502 786 aa14.7□□□□□ -0.06
CDH3-208ENST00000569036 ZNF697Q5TEC3 545 aa14.7□□□□□ -0.06
CDH3-208ENST00000569036 ZBTB38Q8NAP3 1195 aaPredicted RBP14.7□□□□□ -0.06
CDH3-208ENST00000569036 MINPP1Q9UNW1 487 aa14.7□□□□□ -0.06
CDH3-208ENST00000569036 KLRK1P26718 216 aa14.69□□□□□ -0.06
CDH3-208ENST00000569036 TRIM28Q13263 835 aaKnown RBP14.69□□□□□ -0.06
CDH3-208ENST00000569036 SNAPC2Q13487 334 aa14.69□□□□□ -0.06
CDH3-208ENST00000569036 TEPSINQ96N21 525 aa14.69□□□□□ -0.06
CDH3-208ENST00000569036 SNCAIPQ9Y6H5 919 aa14.69□□□□□ -0.06
CDH3-208ENST00000569036 IRF6O14896 467 aa14.68□□□□□ -0.06
CDH3-208ENST00000569036 HSP90B1P14625 803 aaKnown RBP14.68□□□□□ -0.06
CDH3-208ENST00000569036 FCGRTP55899 365 aa14.68□□□□□ -0.06
CDH3-208ENST00000569036 MAP3K12Q12852 859 aa14.68□□□□□ -0.06
CDH3-208ENST00000569036 ANKLE1Q8NAG6 615 aa14.68□□□□□ -0.06
CDH3-208ENST00000569036 CHPF2Q9P2E5 772 aa14.68□□□□□ -0.06
CDH3-208ENST00000569036 NCOR1O75376 2440 aa14.67□□□□□ -0.06
CDH3-208ENST00000569036 F8W031 263 aaPredicted RBP14.67□□□□□ -0.06
CDH3-208ENST00000569036 PDE8AO60658 829 aa14.67□□□□□ -0.06
CDH3-208ENST00000569036 TNFAIP1Q13829 316 aa14.67□□□□□ -0.06
CDH3-208ENST00000569036 TJAP1Q5JTD0 557 aa14.67□□□□□ -0.06
CDH3-208ENST00000569036 ERO1BQ86YB8 467 aa14.67□□□□□ -0.06
CDH3-208ENST00000569036 DNAH12Q6ZR08 3092 aa14.67□□□□□ -0.06
CDH3-208ENST00000569036 BDP1A6H8Y1 2624 aa14.66□□□□□ -0.06
CDH3-208ENST00000569036 PPIL2Q13356 520 aa14.66□□□□□ -0.06
CDH3-208ENST00000569036 PXYLP1Q8TE99 480 aa14.66□□□□□ -0.06
CDH3-208ENST00000569036 CDC5LQ99459 802 aaKnown RBP14.66□□□□□ -0.06
CDH3-208ENST00000569036 NBPF3Q9H094 633 aa14.66□□□□□ -0.06
CDH3-208ENST00000569036 BSDC1Q9NW68 430 aaPredicted RBP14.66□□□□□ -0.06
CDH3-208ENST00000569036 PIEZO1Q92508 2521 aa14.65□□□□□ -0.06
CDH3-208ENST00000569036 MYH3P11055 1940 aa14.65□□□□□ -0.06
CDH3-208ENST00000569036 PDHXO00330 501 aa14.65□□□□□ -0.06
CDH3-208ENST00000569036 CENPBP07199 599 aaPredicted RBP14.65□□□□□ -0.06
CDH3-208ENST00000569036 BCRP11274 1271 aa14.65□□□□□ -0.06
CDH3-208ENST00000569036 FLT3LGP49771 235 aa14.65□□□□□ -0.06
CDH3-208ENST00000569036 NFE2L2Q16236 605 aa14.65□□□□□ -0.06
CDH3-208ENST00000569036 SPDYE2Q495Y8 402 aa14.65□□□□□ -0.06
CDH3-208ENST00000569036 ANKRD23Q86SG2 305 aa14.65□□□□□ -0.06
CDH3-208ENST00000569036 MYLIPQ8WY64 445 aa14.65□□□□□ -0.06
CDH3-208ENST00000569036 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.65□□□□□ -0.06
CDH3-208ENST00000569036 LEMD3Q9Y2U8 911 aa14.65□□□□□ -0.06
CDH3-208ENST00000569036 SYNGAP1Q96PV0 1343 aa14.65□□□□□ -0.06
CDH3-208ENST00000569036 MDM2Q00987 491 aaPredicted RBP14.64□□□□□ -0.07
CDH3-208ENST00000569036 TMEM39BQ9GZU3 492 aa14.64□□□□□ -0.07
CDH3-208ENST00000569036 SEMA6BQ9H3T3 888 aa14.64□□□□□ -0.07
CDH3-208ENST00000569036 C11orf49Q9H6J7 331 aa14.64□□□□□ -0.07
CDH3-208ENST00000569036 ZNF70Q9UC06 446 aaPredicted RBP14.64□□□□□ -0.07
CDH3-208ENST00000569036 TIMELESSQ9UNS1 1208 aa14.64□□□□□ -0.07
CDH3-208ENST00000569036 PCCAP05165 728 aaPredicted RBP14.63□□□□□ -0.07
CDH3-208ENST00000569036 RBM5P52756 815 aaKnown RBP eCLIP14.63□□□□□ -0.07
CDH3-208ENST00000569036 IRF5Q13568 498 aa14.63□□□□□ -0.07
CDH3-208ENST00000569036 JARID2Q92833 1246 aaPredicted RBP14.63□□□□□ -0.07
CDH3-208ENST00000569036 CD209Q9NNX6 404 aa14.63□□□□□ -0.07
CDH3-208ENST00000569036 DOCK3Q8IZD9 2030 aa14.63□□□□□ -0.07
CDH3-208ENST00000569036 NEFMP07197 916 aa14.62□□□□□ -0.07
CDH3-208ENST00000569036 FOSL2P15408 326 aa14.62□□□□□ -0.07
CDH3-208ENST00000569036 KRT24Q2M2I5 525 aa14.62□□□□□ -0.07
CDH3-208ENST00000569036 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.62□□□□□ -0.07
CDH3-208ENST00000569036 ZKSCAN4Q969J2 545 aaPredicted RBP14.62□□□□□ -0.07
CDH3-208ENST00000569036 WRNIP1Q96S55 665 aa14.62□□□□□ -0.07
CDH3-208ENST00000569036 PFASO15067 1338 aa14.62□□□□□ -0.07
CDH3-208ENST00000569036 TCP10L2B9ZVM9 353 aa14.61□□□□□ -0.07
CDH3-208ENST00000569036 CTSWP56202 376 aa14.61□□□□□ -0.07
CDH3-208ENST00000569036 TDRD3Q9H7E2 651 aaKnown RBP14.61□□□□□ -0.07
CDH3-208ENST00000569036 FKBP1AP62942 108 aaKnown RBP14.6□□□□□ -0.07
CDH3-208ENST00000569036 MOGSQ13724 837 aa14.6□□□□□ -0.07
CDH3-208ENST00000569036 PLEKHF1Q96S99 279 aa14.6□□□□□ -0.07
CDH3-208ENST00000569036 PARK7Q99497 189 aaKnown RBP14.6□□□□□ -0.07
CDH3-208ENST00000569036 GREM2Q9H772 168 aa14.6□□□□□ -0.07
CDH3-208ENST00000569036 BABAM1Q9NWV8 329 aa14.6□□□□□ -0.07
CDH3-208ENST00000569036 CYP2C8P10632 490 aa14.59□□□□□ -0.07
CDH3-208ENST00000569036 PPATQ06203 517 aa14.59□□□□□ -0.07
CDH3-208ENST00000569036 HDGFL1Q5TGJ6 251 aa14.59□□□□□ -0.07
CDH3-208ENST00000569036 USP38Q8NB14 1042 aa14.59□□□□□ -0.07
CDH3-208ENST00000569036 TTYH1Q9H313 450 aaPredicted RBP14.59□□□□□ -0.07
CDH3-208ENST00000569036 TAOK2Q9UL54 1235 aa14.59□□□□□ -0.07
CDH3-208ENST00000569036 TNPO2O14787 897 aaKnown RBP14.58□□□□□ -0.08
CDH3-208ENST00000569036 CCDC191Q8NCU4 936 aa14.58□□□□□ -0.08
CDH3-208ENST00000569036 TTLL11Q8NHH1 800 aa14.58□□□□□ -0.08
CDH3-208ENST00000569036 SNX27Q96L92 541 aa14.58□□□□□ -0.08
CDH3-208ENST00000569036 MYD88Q99836 296 aa14.58□□□□□ -0.08
CDH3-208ENST00000569036 DBF4Q9UBU7 674 aaPredicted RBP14.58□□□□□ -0.08
CDH3-208ENST00000569036 KCNH4Q9UQ05 1017 aa14.58□□□□□ -0.08
CDH3-208ENST00000569036 JAG2Q9Y219 1238 aa14.58□□□□□ -0.08
CDH3-208ENST00000569036 A0A1B0GUL6 1792 aa14.57□□□□□ -0.08
CDH3-208ENST00000569036 TNNI2P48788 182 aa14.57□□□□□ -0.08
CDH3-208ENST00000569036 RIC3Q7Z5B4 369 aa14.57□□□□□ -0.08
CDH3-208ENST00000569036 ANKRD2Q9GZV1 360 aa14.57□□□□□ -0.08
CDH3-208ENST00000569036 CWC25Q9NXE8 425 aaPredicted RBP14.57□□□□□ -0.08
CDH3-208ENST00000569036 OGDHLQ9ULD0 1010 aa14.57□□□□□ -0.08
CDH3-208ENST00000569036 MAST2Q6P0Q8 1798 aa14.57□□□□□ -0.08
CDH3-208ENST00000569036 LTBP2Q14767 1821 aa14.57□□□□□ -0.08
CDH3-208ENST00000569036 IL1R1P14778 569 aa14.56□□□□□ -0.08
CDH3-208ENST00000569036 PPP2R1AP30153 589 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms