RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 KBTBD4Q9NVX7 518 aa7.46□□□□□ -1.21
LINC00560-201ENST00000564593 F6X3S4 739 aa7.46□□□□□ -1.22
LINC00560-201ENST00000564593 M0R082 166 aa7.46□□□□□ -1.22
LINC00560-201ENST00000564593 ENC1O14682 589 aa7.46□□□□□ -1.22
LINC00560-201ENST00000564593 LILRB5O75023 590 aa7.46□□□□□ -1.22
LINC00560-201ENST00000564593 AMPD1P23109 780 aa7.46□□□□□ -1.22
LINC00560-201ENST00000564593 PPP2R3AQ06190 1150 aa7.46□□□□□ -1.22
LINC00560-201ENST00000564593 GRIK5Q16478 980 aa7.46□□□□□ -1.22
LINC00560-201ENST00000564593 ZNF423Q2M1K9 1284 aa7.46□□□□□ -1.22
LINC00560-201ENST00000564593 ZMYM1Q5SVZ6 1142 aa7.46□□□□□ -1.22
LINC00560-201ENST00000564593 CHSY3Q70JA7 882 aa7.46□□□□□ -1.22
LINC00560-201ENST00000564593 ZNF417Q8TAU3 575 aa7.46□□□□□ -1.22
LINC00560-201ENST00000564593 BTBD6Q96KE9 485 aa7.46□□□□□ -1.22
LINC00560-201ENST00000564593 ZNF587Q96SQ5 575 aaPredicted RBP7.46□□□□□ -1.22
LINC00560-201ENST00000564593 SEMA6BQ9H3T3 888 aa7.46□□□□□ -1.22
LINC00560-201ENST00000564593 CAPN10Q9HC96 672 aa7.46□□□□□ -1.22
LINC00560-201ENST00000564593 MINDY4BA8MYZ0 360 aa7.45□□□□□ -1.22
LINC00560-201ENST00000564593 EPHA1P21709 976 aa7.45□□□□□ -1.22
LINC00560-201ENST00000564593 CDC25BP30305 580 aa7.45□□□□□ -1.22
LINC00560-201ENST00000564593 GBP2P32456 591 aaPredicted RBP7.45□□□□□ -1.22
LINC00560-201ENST00000564593 CHRNA4P43681 627 aa7.45□□□□□ -1.22
LINC00560-201ENST00000564593 AFF1P51825 1210 aaKnown RBP7.45□□□□□ -1.22
LINC00560-201ENST00000564593 IKBKEQ14164 716 aa7.45□□□□□ -1.22
LINC00560-201ENST00000564593 TMEM74Q96NL1 305 aa7.45□□□□□ -1.22
LINC00560-201ENST00000564593 B3GALT4O96024 378 aa7.44□□□□□ -1.22
LINC00560-201ENST00000564593 ESRRAP11474 423 aaPredicted RBP7.44□□□□□ -1.22
LINC00560-201ENST00000564593 TNNI2P48788 182 aa7.44□□□□□ -1.22
LINC00560-201ENST00000564593 LCE3BQ5TA77 95 aa7.44□□□□□ -1.22
LINC00560-201ENST00000564593 C8orf86Q6ZUL3 223 aa7.44□□□□□ -1.22
LINC00560-201ENST00000564593 NOP53Q9NZM5 478 aaKnown RBP7.44□□□□□ -1.22
LINC00560-201ENST00000564593 INPP5FQ9Y2H2 1132 aa7.44□□□□□ -1.22
LINC00560-201ENST00000564593 PPME1Q9Y570 386 aa7.44□□□□□ -1.22
LINC00560-201ENST00000564593 H3BRJ5 948 aa7.43□□□□□ -1.22
LINC00560-201ENST00000564593 PAGE1O75459 146 aa7.43□□□□□ -1.22
LINC00560-201ENST00000564593 LIG3P49916 1009 aa7.43□□□□□ -1.22
LINC00560-201ENST00000564593 GNL2Q13823 731 aaKnown RBP7.43□□□□□ -1.22
LINC00560-201ENST00000564593 TTBK2Q6IQ55 1244 aa7.43□□□□□ -1.22
LINC00560-201ENST00000564593 KRTAP4-12Q9BQ66 201 aa7.43□□□□□ -1.22
LINC00560-201ENST00000564593 USP35Q9P2H5 1018 aa7.43□□□□□ -1.22
LINC00560-201ENST00000564593 LINC01387J3KSC0 135 aa7.42□□□□□ -1.22
LINC00560-201ENST00000564593 SOX1O00570 391 aaPredicted RBP7.42□□□□□ -1.22
LINC00560-201ENST00000564593 PCNX4Q63HM2 1172 aa7.42□□□□□ -1.22
LINC00560-201ENST00000564593 WFDC8Q8IUA0 241 aa7.42□□□□□ -1.22
LINC00560-201ENST00000564593 PHC3Q8NDX5 983 aa7.42□□□□□ -1.22
LINC00560-201ENST00000564593 DDX54Q8TDD1 881 aaKnown RBP7.42□□□□□ -1.22
LINC00560-201ENST00000564593 TINF2Q9BSI4 451 aa7.42□□□□□ -1.22
LINC00560-201ENST00000564593 TLR6Q9Y2C9 796 aa7.42□□□□□ -1.22
LINC00560-201ENST00000564593 SAMM50Q9Y512 469 aa7.42□□□□□ -1.22
LINC00560-201ENST00000564593 DGKGP49619 791 aa7.42□□□□□ -1.22
LINC00560-201ENST00000564593 DOC2BQ14184 412 aa7.42□□□□□ -1.22
LINC00560-201ENST00000564593 FAM117BQ6P1L5 589 aa7.42□□□□□ -1.22
LINC00560-201ENST00000564593 TXNDC11Q6PKC3 985 aa7.42□□□□□ -1.22
LINC00560-201ENST00000564593 SLC7A3Q8WY07 619 aa7.42□□□□□ -1.22
LINC00560-201ENST00000564593 SPON2Q9BUD6 331 aa7.42□□□□□ -1.22
LINC00560-201ENST00000564593 IGSF3O75054 1194 aa7.41□□□□□ -1.22
LINC00560-201ENST00000564593 LMNB1P20700 586 aa7.41□□□□□ -1.22
LINC00560-201ENST00000564593 NME2P22392 152 aa7.41□□□□□ -1.22
LINC00560-201ENST00000564593 EIF4A3P38919 411 aaKnown RBP7.41□□□□□ -1.22
LINC00560-201ENST00000564593 ARL4DP49703 201 aa7.41□□□□□ -1.22
LINC00560-201ENST00000564593 MSL1Q68DK7 614 aa7.41□□□□□ -1.22
LINC00560-201ENST00000564593 AGMOQ6ZNB7 445 aa7.41□□□□□ -1.22
LINC00560-201ENST00000564593 SREK1Q8WXA9 508 aaKnown RBP7.41□□□□□ -1.22
LINC00560-201ENST00000564593 ADAMTS1Q9UHI8 967 aa7.41□□□□□ -1.22
LINC00560-201ENST00000564593 BMP6P22004 513 aa7.4□□□□□ -1.22
LINC00560-201ENST00000564593 RPS26P62854 115 aaKnown RBP7.4□□□□□ -1.22
LINC00560-201ENST00000564593 PIP4K2BP78356 416 aa7.4□□□□□ -1.22
LINC00560-201ENST00000564593 GSTM4Q03013 218 aa7.4□□□□□ -1.22
LINC00560-201ENST00000564593 FAM160A1Q05DH4 1040 aa7.4□□□□□ -1.22
LINC00560-201ENST00000564593 PAK2Q13177 524 aa7.4□□□□□ -1.22
LINC00560-201ENST00000564593 KIAA0825Q8IV33 1275 aa7.4□□□□□ -1.22
LINC00560-201ENST00000564593 SULF2Q8IWU5 870 aa7.4□□□□□ -1.22
LINC00560-201ENST00000564593 SLC43A3Q8NBI5 491 aa7.4□□□□□ -1.22
LINC00560-201ENST00000564593 CBX8Q9HC52 389 aa7.4□□□□□ -1.22
LINC00560-201ENST00000564593 PRDM6Q9NQX0 595 aa7.4□□□□□ -1.22
LINC00560-201ENST00000564593 PF4P02776 101 aa7.39□□□□□ -1.23
LINC00560-201ENST00000564593 TFE3P19532 575 aaPredicted RBP7.39□□□□□ -1.23
LINC00560-201ENST00000564593 ARNTP27540 789 aa7.39□□□□□ -1.23
LINC00560-201ENST00000564593 LMNB2Q03252 620 aa7.39□□□□□ -1.23
LINC00560-201ENST00000564593 CAMK2GQ13555 558 aaPredicted RBP7.39□□□□□ -1.23
LINC00560-201ENST00000564593 HGSNATQ68CP4 663 aa7.39□□□□□ -1.23
LINC00560-201ENST00000564593 ZNF296Q8WUU4 475 aaPredicted RBP7.39□□□□□ -1.23
LINC00560-201ENST00000564593 RHOVQ96L33 236 aa7.39□□□□□ -1.23
LINC00560-201ENST00000564593 DRC1Q96MC2 740 aa7.39□□□□□ -1.23
LINC00560-201ENST00000564593 EMILIN2Q9BXX0 1053 aa7.39□□□□□ -1.23
LINC00560-201ENST00000564593 SOX17Q9H6I2 414 aaPredicted RBP7.39□□□□□ -1.23
LINC00560-201ENST00000564593 CYP8B1Q9UNU6 501 aa7.39□□□□□ -1.23
LINC00560-201ENST00000564593 FSCN2O14926 492 aa7.38□□□□□ -1.23
LINC00560-201ENST00000564593 C19orf57Q0VDD7 668 aa7.38□□□□□ -1.23
LINC00560-201ENST00000564593 LRRC14Q15048 493 aa7.38□□□□□ -1.23
LINC00560-201ENST00000564593 SF3A1Q15459 793 aaKnown RBP7.38□□□□□ -1.23
LINC00560-201ENST00000564593 FBXL19Q6PCT2 694 aa7.38□□□□□ -1.23
LINC00560-201ENST00000564593 VPS37DQ86XT2 251 aa7.38□□□□□ -1.23
LINC00560-201ENST00000564593 DMRTC2Q8IXT2 367 aaPredicted RBP7.38□□□□□ -1.23
LINC00560-201ENST00000564593 STK35Q8TDR2 534 aa7.38□□□□□ -1.23
LINC00560-201ENST00000564593 WNT8BQ93098 351 aa7.38□□□□□ -1.23
LINC00560-201ENST00000564593 EIF4EBP3O60516 100 aaPredicted RBP7.37□□□□□ -1.23
LINC00560-201ENST00000564593 GATA4P43694 442 aa7.37□□□□□ -1.23
LINC00560-201ENST00000564593 AP3B2Q13367 1082 aa7.37□□□□□ -1.23
LINC00560-201ENST00000564593 SNAP47Q5SQN1 464 aa7.37□□□□□ -1.23
LINC00560-201ENST00000564593 RASIP1Q5U651 963 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms