RNA–Protein interactions for RNA: ENST00000560519.1

HERC1-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 3

Gene HERC1, Length 591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-209ENST00000560519 SNAP23O00161 211 aa12.15□□□□□ -0.46
HERC1-209ENST00000560519 PLIN1O60240 522 aa12.15□□□□□ -0.46
HERC1-209ENST00000560519 VAMP4O75379 141 aa12.15□□□□□ -0.46
HERC1-209ENST00000560519 ALDH1L1O75891 902 aa12.15□□□□□ -0.46
HERC1-209ENST00000560519 CRKP46108 304 aa12.15□□□□□ -0.46
HERC1-209ENST00000560519 EXOSC9Q06265 439 aaKnown RBP12.15□□□□□ -0.46
HERC1-209ENST00000560519 TAF1CQ15572 869 aaPredicted RBP12.15□□□□□ -0.46
HERC1-209ENST00000560519 SLC9C1Q4G0N8 1177 aa12.15□□□□□ -0.46
HERC1-209ENST00000560519 CAVIN4Q5BKX8 364 aa12.15□□□□□ -0.46
HERC1-209ENST00000560519 TDRD3Q9H7E2 651 aaKnown RBP12.15□□□□□ -0.46
HERC1-209ENST00000560519 ZNF70Q9UC06 446 aaPredicted RBP12.15□□□□□ -0.46
HERC1-209ENST00000560519 JAG2Q9Y219 1238 aa12.15□□□□□ -0.46
HERC1-209ENST00000560519 ZSWIM8A7E2V4 1837 aa12.15□□□□□ -0.46
HERC1-209ENST00000560519 CCL15-CCL14A0A0B4J2E2 113 aa12.14□□□□□ -0.47
HERC1-209ENST00000560519 F6X3S4 739 aa12.14□□□□□ -0.47
HERC1-209ENST00000560519 GJA5P36382 358 aa12.14□□□□□ -0.47
HERC1-209ENST00000560519 HDLBPQ00341 1268 aaKnown RBP12.14□□□□□ -0.47
HERC1-209ENST00000560519 VGLL4Q14135 290 aa12.14□□□□□ -0.47
HERC1-209ENST00000560519 KIF22Q14807 665 aa12.14□□□□□ -0.47
HERC1-209ENST00000560519 CCL15Q16663 113 aa12.14□□□□□ -0.47
HERC1-209ENST00000560519 DZIP1LQ8IYY4 767 aaKnown RBP12.14□□□□□ -0.47
HERC1-209ENST00000560519 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.14□□□□□ -0.47
HERC1-209ENST00000560519 SRCIN1Q9C0H9 1055 aa12.14□□□□□ -0.47
HERC1-209ENST00000560519 MRS2Q9HD23 443 aa12.14□□□□□ -0.47
HERC1-209ENST00000560519 MGAMO43451 1857 aa12.13□□□□□ -0.47
HERC1-209ENST00000560519 SPDYE5A6NIY4 337 aa12.13□□□□□ -0.47
HERC1-209ENST00000560519 TCP10L2B9ZVM9 353 aa12.13□□□□□ -0.47
HERC1-209ENST00000560519 FRAT2O75474 233 aaPredicted RBP12.13□□□□□ -0.47
HERC1-209ENST00000560519 GNRH1P01148 92 aa12.13□□□□□ -0.47
HERC1-209ENST00000560519 GYG1P46976 350 aa12.13□□□□□ -0.47
HERC1-209ENST00000560519 TEKT1Q969V4 418 aa12.13□□□□□ -0.47
HERC1-209ENST00000560519 OTUD5Q96G74 571 aa12.13□□□□□ -0.47
HERC1-209ENST00000560519 ZNF594Q96JF6 807 aaPredicted RBP12.13□□□□□ -0.47
HERC1-209ENST00000560519 ZNF333Q96JL9 665 aa12.13□□□□□ -0.47
HERC1-209ENST00000560519 MS4A4AQ96JQ5 239 aa12.13□□□□□ -0.47
HERC1-209ENST00000560519 TEPSINQ96N21 525 aa12.13□□□□□ -0.47
HERC1-209ENST00000560519 AOX1Q06278 1338 aa12.12□□□□□ -0.47
HERC1-209ENST00000560519 KIF16BQ96L93 1317 aa12.12□□□□□ -0.47
HERC1-209ENST00000560519 CETPP11597 493 aa12.12□□□□□ -0.47
HERC1-209ENST00000560519 PRMT2P55345 433 aa12.12□□□□□ -0.47
HERC1-209ENST00000560519 MAP3K9P80192 1104 aa12.12□□□□□ -0.47
HERC1-209ENST00000560519 HABP4Q5JVS0 413 aaKnown RBP12.12□□□□□ -0.47
HERC1-209ENST00000560519 DCAF15Q66K64 600 aa12.12□□□□□ -0.47
HERC1-209ENST00000560519 SLC4A10Q6U841 1118 aa12.12□□□□□ -0.47
HERC1-209ENST00000560519 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.12□□□□□ -0.47
HERC1-209ENST00000560519 FAM83AQ86UY5 434 aa12.12□□□□□ -0.47
HERC1-209ENST00000560519 BRI3BPQ8WY22 251 aa12.12□□□□□ -0.47
HERC1-209ENST00000560519 PTPN18Q99952 460 aa12.12□□□□□ -0.47
HERC1-209ENST00000560519 SUGT1Q9Y2Z0 365 aa12.12□□□□□ -0.47
HERC1-209ENST00000560519 MKI67P46013 3256 aaKnown RBP12.12□□□□□ -0.47
HERC1-209ENST00000560519 AK9Q5TCS8 1911 aa12.11□□□□□ -0.47
HERC1-209ENST00000560519 SLC4A8Q2Y0W8 1093 aa12.11□□□□□ -0.47
HERC1-209ENST00000560519 EPHA10Q5JZY3 1008 aa12.11□□□□□ -0.47
HERC1-209ENST00000560519 ERO1BQ86YB8 467 aa12.11□□□□□ -0.47
HERC1-209ENST00000560519 FAM84BQ96KN1 310 aaPredicted RBP12.11□□□□□ -0.47
HERC1-209ENST00000560519 WRNIP1Q96S55 665 aa12.11□□□□□ -0.47
HERC1-209ENST00000560519 TMEM39BQ9GZU3 492 aa12.11□□□□□ -0.47
HERC1-209ENST00000560519 UTYO14607 1347 aa12.11□□□□□ -0.47
HERC1-209ENST00000560519 DOCK1Q14185 1865 aa12.1□□□□□ -0.47
HERC1-209ENST00000560519 TLR2O60603 784 aa12.1□□□□□ -0.47
HERC1-209ENST00000560519 SNAPC2Q13487 334 aa12.1□□□□□ -0.47
HERC1-209ENST00000560519 CCDC184Q52MB2 194 aa12.1□□□□□ -0.47
HERC1-209ENST00000560519 METTL24Q5JXM2 366 aa12.1□□□□□ -0.47
HERC1-209ENST00000560519 FKBP1CQ5VVH2 108 aa12.1□□□□□ -0.47
HERC1-209ENST00000560519 ZDHHC15Q96MV8 337 aa12.1□□□□□ -0.47
HERC1-209ENST00000560519 PTCH2Q9Y6C5 1203 aa12.1□□□□□ -0.47
HERC1-209ENST00000560519 PDE8BO95263 885 aa12.09□□□□□ -0.47
HERC1-209ENST00000560519 EN2P19622 333 aaPredicted RBP12.09□□□□□ -0.47
HERC1-209ENST00000560519 LACTBP83111 547 aaPredicted RBP12.09□□□□□ -0.47
HERC1-209ENST00000560519 CHAF1AQ13111 956 aaPredicted RBP12.09□□□□□ -0.47
HERC1-209ENST00000560519 PPIL2Q13356 520 aa12.09□□□□□ -0.47
HERC1-209ENST00000560519 RABL6Q3YEC7 729 aaPredicted RBP12.09□□□□□ -0.47
HERC1-209ENST00000560519 FAM43AQ8N2R8 423 aa12.09□□□□□ -0.47
HERC1-209ENST00000560519 SUCLG2Q96I99 432 aa12.09□□□□□ -0.47
HERC1-209ENST00000560519 RIPOR2Q9Y4F9 1068 aa12.09□□□□□ -0.47
HERC1-209ENST00000560519 SNCAIPQ9Y6H5 919 aa12.09□□□□□ -0.47
HERC1-209ENST00000560519 PTPRCP08575 1304 aa12.09□□□□□ -0.47
HERC1-209ENST00000560519 ANP32CO43423 234 aa12.08□□□□□ -0.48
HERC1-209ENST00000560519 IFIT1P09914 478 aaKnown RBP12.08□□□□□ -0.48
HERC1-209ENST00000560519 PUM3Q15397 648 aaKnown RBP12.08□□□□□ -0.48
HERC1-209ENST00000560519 CDAN1Q8IWY9 1227 aa12.08□□□□□ -0.48
HERC1-209ENST00000560519 CNKSR2Q8WXI2 1034 aa12.08□□□□□ -0.48
HERC1-209ENST00000560519 MRIQ9BWK5 157 aa12.08□□□□□ -0.48
HERC1-209ENST00000560519 ZNF341Q9BYN7 854 aa12.08□□□□□ -0.48
HERC1-209ENST00000560519 BICC1Q9H694 974 aaKnown RBP12.08□□□□□ -0.48
HERC1-209ENST00000560519 SALL2Q9Y467 1007 aaPredicted RBP12.08□□□□□ -0.48
HERC1-209ENST00000560519 PTPRFP10586 1907 aa12.07□□□□□ -0.48
HERC1-209ENST00000560519 NBPF7P0C2Y1 421 aaPredicted RBP12.07□□□□□ -0.48
HERC1-209ENST00000560519 PPATQ06203 517 aa12.07□□□□□ -0.48
HERC1-209ENST00000560519 HHIPL2Q6UWX4 724 aa12.07□□□□□ -0.48
HERC1-209ENST00000560519 FBXO33Q7Z6M2 555 aa12.07□□□□□ -0.48
HERC1-209ENST00000560519 PUS3Q9BZE2 481 aaKnown RBP12.07□□□□□ -0.48
HERC1-209ENST00000560519 IQSEC3Q9UPP2 1182 aaPredicted RBP12.07□□□□□ -0.48
HERC1-209ENST00000560519 MYH2Q9UKX2 1941 aa12.06□□□□□ -0.48
HERC1-209ENST00000560519 BTBD19C9JJ37 291 aa12.06□□□□□ -0.48
HERC1-209ENST00000560519 IRF6O14896 467 aa12.06□□□□□ -0.48
HERC1-209ENST00000560519 HOXD10P28358 340 aa12.06□□□□□ -0.48
HERC1-209ENST00000560519 VGLL2Q8N8G2 317 aa12.06□□□□□ -0.48
HERC1-209ENST00000560519 NKX2-3Q8TAU0 364 aa12.06□□□□□ -0.48
HERC1-209ENST00000560519 WDR66Q8TBY9 1149 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms