RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 ZBTB48P10074 688 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-215ENST00000554656 CRKP46108 304 aa13.29□□□□□ -0.28
SHMT2-215ENST00000554656 SLFN5Q08AF3 891 aa13.29□□□□□ -0.28
SHMT2-215ENST00000554656 METTL24Q5JXM2 366 aa13.29□□□□□ -0.28
SHMT2-215ENST00000554656 IFNL1Q8IU54 200 aa13.29□□□□□ -0.28
SHMT2-215ENST00000554656 DZIP1LQ8IYY4 767 aaKnown RBP13.29□□□□□ -0.28
SHMT2-215ENST00000554656 CDCA7LQ96GN5 454 aa13.29□□□□□ -0.28
SHMT2-215ENST00000554656 SERPINA10Q9UK55 444 aa13.29□□□□□ -0.28
SHMT2-215ENST00000554656 MANSC4A6NHS7 340 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-215ENST00000554656 FGFR2P21802 821 aa13.28□□□□□ -0.28
SHMT2-215ENST00000554656 RFX5P48382 616 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-215ENST00000554656 CHAF1AQ13111 956 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-215ENST00000554656 SUPT20HL1Q3ZLR7 823 aa13.28□□□□□ -0.28
SHMT2-215ENST00000554656 TCP10L2B9ZVM9 353 aa13.27□□□□□ -0.29
SHMT2-215ENST00000554656 FKTNO75072 461 aa13.27□□□□□ -0.29
SHMT2-215ENST00000554656 PDE8BO95263 885 aa13.27□□□□□ -0.29
SHMT2-215ENST00000554656 BCAMP50895 628 aa13.27□□□□□ -0.29
SHMT2-215ENST00000554656 CAP1Q01518 475 aa13.27□□□□□ -0.29
SHMT2-215ENST00000554656 PKN2Q16513 984 aaKnown RBP13.27□□□□□ -0.29
SHMT2-215ENST00000554656 CNKSR2Q8WXI2 1034 aa13.27□□□□□ -0.29
SHMT2-215ENST00000554656 PTPN18Q99952 460 aa13.27□□□□□ -0.29
SHMT2-215ENST00000554656 TMEM39BQ9GZU3 492 aa13.27□□□□□ -0.29
SHMT2-215ENST00000554656 ZSWIM8A7E2V4 1837 aa13.27□□□□□ -0.29
SHMT2-215ENST00000554656 UNCXA6NJT0 531 aa13.26□□□□□ -0.29
SHMT2-215ENST00000554656 SLC34A2O95436 690 aa13.26□□□□□ -0.29
SHMT2-215ENST00000554656 IREB2P48200 963 aaKnown RBP13.26□□□□□ -0.29
SHMT2-215ENST00000554656 CACNB3P54284 484 aa13.26□□□□□ -0.29
SHMT2-215ENST00000554656 FBXO46Q6PJ61 603 aaPredicted RBP13.26□□□□□ -0.29
SHMT2-215ENST00000554656 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.26□□□□□ -0.29
SHMT2-215ENST00000554656 RBBP6Q7Z6E9 1792 aaKnown RBP13.26□□□□□ -0.29
SHMT2-215ENST00000554656 ANKRD13AQ8IZ07 590 aa13.26□□□□□ -0.29
SHMT2-215ENST00000554656 TRMT2AQ8IZ69 625 aaKnown RBP13.26□□□□□ -0.29
SHMT2-215ENST00000554656 ELP3Q9H9T3 547 aa13.26□□□□□ -0.29
SHMT2-215ENST00000554656 CENPFP49454 3210 aa13.26□□□□□ -0.29
SHMT2-215ENST00000554656 KIF16BQ96L93 1317 aa13.25□□□□□ -0.29
SHMT2-215ENST00000554656 ALDH1A1P00352 501 aa13.25□□□□□ -0.29
SHMT2-215ENST00000554656 INHBEP58166 350 aa13.25□□□□□ -0.29
SHMT2-215ENST00000554656 CRHR2Q13324 411 aa13.25□□□□□ -0.29
SHMT2-215ENST00000554656 TNFAIP1Q13829 316 aa13.25□□□□□ -0.29
SHMT2-215ENST00000554656 ATG9AQ7Z3C6 839 aa13.25□□□□□ -0.29
SHMT2-215ENST00000554656 VPS37DQ86XT2 251 aa13.25□□□□□ -0.29
SHMT2-215ENST00000554656 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.25□□□□□ -0.298e-7■■□□□ 11.7
SHMT2-215ENST00000554656 OPTNQ96CV9 577 aa13.25□□□□□ -0.29
SHMT2-215ENST00000554656 MS4A4AQ96JQ5 239 aa13.25□□□□□ -0.29
SHMT2-215ENST00000554656 TESPA1A2RU30 521 aaPredicted RBP13.24□□□□□ -0.29
SHMT2-215ENST00000554656 EYA2O00167 538 aa13.24□□□□□ -0.29
SHMT2-215ENST00000554656 HDLBPQ00341 1268 aaKnown RBP13.24□□□□□ -0.29
SHMT2-215ENST00000554656 VGLL4Q14135 290 aa13.24□□□□□ -0.29
SHMT2-215ENST00000554656 PUM3Q15397 648 aaKnown RBP13.24□□□□□ -0.29
SHMT2-215ENST00000554656 ALDH1L2Q3SY69 923 aa13.24□□□□□ -0.29
SHMT2-215ENST00000554656 CAVIN4Q5BKX8 364 aa13.24□□□□□ -0.29
SHMT2-215ENST00000554656 OTOP1Q7RTM1 612 aa13.24□□□□□ -0.29
SHMT2-215ENST00000554656 TBC1D22AQ8WUA7 517 aa13.24□□□□□ -0.29
SHMT2-215ENST00000554656 ZDHHC15Q96MV8 337 aa13.24□□□□□ -0.29
SHMT2-215ENST00000554656 SMC4Q9NTJ3 1288 aa13.24□□□□□ -0.29
SHMT2-215ENST00000554656 APOBEC3HQ6NTF7 200 aaKnown RBP13.23□□□□□ -0.29
SHMT2-215ENST00000554656 BRI3BPQ8WY22 251 aa13.23□□□□□ -0.29
SHMT2-215ENST00000554656 TEKT1Q969V4 418 aa13.23□□□□□ -0.29
SHMT2-215ENST00000554656 MYH2Q9UKX2 1941 aa13.23□□□□□ -0.29
SHMT2-215ENST00000554656 AK9Q5TCS8 1911 aa13.22□□□□□ -0.29
SHMT2-215ENST00000554656 FRAT2O75474 233 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-215ENST00000554656 IFIT1P09914 478 aaKnown RBP13.22□□□□□ -0.29
SHMT2-215ENST00000554656 CD99L2Q8TCZ2 262 aa13.22□□□□□ -0.29
SHMT2-215ENST00000554656 TRIM17Q9Y577 477 aa13.22□□□□□ -0.29
SHMT2-215ENST00000554656 SNCAIPQ9Y6H5 919 aa13.22□□□□□ -0.29
SHMT2-215ENST00000554656 KIAA0100Q14667 2235 aaKnown RBP13.22□□□□□ -0.29
SHMT2-215ENST00000554656 MKI67P46013 3256 aaKnown RBP13.22□□□□□ -0.29
SHMT2-215ENST00000554656 RPAP1Q9BWH6 1393 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-215ENST00000554656 DOCK2Q92608 1830 aa13.21□□□□□ -0.29
SHMT2-215ENST00000554656 MAP3K9P80192 1104 aa13.21□□□□□ -0.29
SHMT2-215ENST00000554656 LPIN2Q92539 896 aa13.21□□□□□ -0.29
SHMT2-215ENST00000554656 MRIQ9BWK5 157 aa13.21□□□□□ -0.29
SHMT2-215ENST00000554656 SIL1Q9H173 461 aa13.21□□□□□ -0.29
SHMT2-215ENST00000554656 BRCA2P51587 3418 aa13.21□□□□□ -0.3
SHMT2-215ENST00000554656 SLC5A1P13866 664 aa13.2□□□□□ -0.3
SHMT2-215ENST00000554656 TNNI2P48788 182 aa13.2□□□□□ -0.3
SHMT2-215ENST00000554656 FAM43AQ8N2R8 423 aa13.2□□□□□ -0.3
SHMT2-215ENST00000554656 OTUD5Q96G74 571 aa13.2□□□□□ -0.3
SHMT2-215ENST00000554656 NOB1Q9ULX3 412 aaKnown RBP13.2□□□□□ -0.3
SHMT2-215ENST00000554656 PA2G4Q9UQ80 394 aaKnown RBP13.2□□□□□ -0.3
SHMT2-215ENST00000554656 SUGT1Q9Y2Z0 365 aa13.2□□□□□ -0.3
SHMT2-215ENST00000554656 DAGLAQ9Y4D2 1042 aa13.2□□□□□ -0.3
SHMT2-215ENST00000554656 MAST3O60307 1309 aa13.19□□□□□ -0.3
SHMT2-215ENST00000554656 CCL15-CCL14A0A0B4J2E2 113 aa13.19□□□□□ -0.3
SHMT2-215ENST00000554656 SPDYE5A6NIY4 337 aa13.19□□□□□ -0.3
SHMT2-215ENST00000554656 CIAO1O76071 339 aa13.19□□□□□ -0.3
SHMT2-215ENST00000554656 UBTFL1P0CB47 393 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-215ENST00000554656 PRDX5P30044 214 aa13.19□□□□□ -0.3
SHMT2-215ENST00000554656 DIXDC1Q155Q3 683 aa13.19□□□□□ -0.3
SHMT2-215ENST00000554656 CCL15Q16663 113 aa13.19□□□□□ -0.3
SHMT2-215ENST00000554656 FKBP1CQ5VVH2 108 aa13.19□□□□□ -0.3
SHMT2-215ENST00000554656 HHIPL2Q6UWX4 724 aa13.19□□□□□ -0.3
SHMT2-215ENST00000554656 FAM83AQ86UY5 434 aa13.19□□□□□ -0.3
SHMT2-215ENST00000554656 ERO1AQ96HE7 468 aa13.19□□□□□ -0.3
SHMT2-215ENST00000554656 WRNIP1Q96S55 665 aa13.19□□□□□ -0.3
SHMT2-215ENST00000554656 MEIS3Q99687 375 aa13.19□□□□□ -0.3
SHMT2-215ENST00000554656 CSADQ9Y600 493 aa13.19□□□□□ -0.3
SHMT2-215ENST00000554656 LRRFIP2Q9Y608 721 aaKnown RBP13.19□□□□□ -0.3
SHMT2-215ENST00000554656 POTEFA5A3E0 1075 aa13.18□□□□□ -0.3
SHMT2-215ENST00000554656 PHKA1P46020 1223 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms