RNA–Protein interactions for RNA: ENST00000554514.1

ARHGEF40-203, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 2,928 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-203ENST00000554514 TEX13AQ9BXU3 409 aaPredicted RBP18.28■□□□□ 0.52
ARHGEF40-203ENST00000554514 SENP2Q9HC62 589 aa18.28■□□□□ 0.52
ARHGEF40-203ENST00000554514 WWC3Q9ULE0 1092 aa18.28■□□□□ 0.52
ARHGEF40-203ENST00000554514 ZNF532Q9HCE3 1301 aa18.28■□□□□ 0.52
ARHGEF40-203ENST00000554514 RIOK3O14730 519 aaKnown RBP18.28■□□□□ 0.52
ARHGEF40-203ENST00000554514 MARCKSP29966 332 aaPredicted RBP18.28■□□□□ 0.52
ARHGEF40-203ENST00000554514 ISM2Q6H9L7 571 aa18.28■□□□□ 0.52
ARHGEF40-203ENST00000554514 SYNE3Q6ZMZ3 975 aa18.28■□□□□ 0.52
ARHGEF40-203ENST00000554514 CYB5R4Q7L1T6 521 aa18.28■□□□□ 0.52
ARHGEF40-203ENST00000554514 PHKBQ93100 1093 aa18.28■□□□□ 0.52
ARHGEF40-203ENST00000554514 NBPF3Q9H094 633 aa18.28■□□□□ 0.52
ARHGEF40-203ENST00000554514 ADD2P35612 726 aa18.27■□□□□ 0.52
ARHGEF40-203ENST00000554514 ZRSR1Q15695 479 aaKnown RBP18.27■□□□□ 0.52
ARHGEF40-203ENST00000554514 LINC00301Q8NCQ3 95 aa18.27■□□□□ 0.52
ARHGEF40-203ENST00000554514 FBXO18Q8NFZ0 1043 aa18.27■□□□□ 0.52
ARHGEF40-203ENST00000554514 PLA2G12BQ9BX93 195 aa18.27■□□□□ 0.52
ARHGEF40-203ENST00000554514 TOGARAM1Q9Y4F4 1720 aa18.27■□□□□ 0.52
ARHGEF40-203ENST00000554514 CCDC102BQ68D86 513 aa18.27■□□□□ 0.52
ARHGEF40-203ENST00000554514 ANO10Q9NW15 660 aa18.27■□□□□ 0.52
ARHGEF40-203ENST00000554514 RTEL1Q9NZ71 1219 aa18.27■□□□□ 0.52
ARHGEF40-203ENST00000554514 FBXO3Q9UK99 471 aa18.27■□□□□ 0.52
ARHGEF40-203ENST00000554514 NFXL1Q6ZNB6 911 aa18.26■□□□□ 0.51
ARHGEF40-203ENST00000554514 DHX40Q8IX18 779 aaKnown RBP18.26■□□□□ 0.51
ARHGEF40-203ENST00000554514 PAPPAQ13219 1627 aa18.26■□□□□ 0.51
ARHGEF40-203ENST00000554514 SHANK3Q9BYB0 1731 aa18.26■□□□□ 0.51
ARHGEF40-203ENST00000554514 MYH15Q9Y2K3 1946 aa18.26■□□□□ 0.51
ARHGEF40-203ENST00000554514 SPTLC2O15270 562 aa18.26■□□□□ 0.51
ARHGEF40-203ENST00000554514 GNL2Q13823 731 aaKnown RBP18.26■□□□□ 0.51
ARHGEF40-203ENST00000554514 MYSM1Q5VVJ2 828 aa18.26■□□□□ 0.51
ARHGEF40-203ENST00000554514 FMR1NBQ8N0W7 255 aaPredicted RBP18.26■□□□□ 0.51
ARHGEF40-203ENST00000554514 METAP2P50579 478 aaKnown RBP eCLIP18.26■□□□□ 0.51
ARHGEF40-203ENST00000554514 ATL3Q6DD88 541 aa18.26■□□□□ 0.51
ARHGEF40-203ENST00000554514 ADALQ6DHV7 355 aa18.26■□□□□ 0.51
ARHGEF40-203ENST00000554514 CEP57L1Q8IYX8 460 aa18.26■□□□□ 0.51
ARHGEF40-203ENST00000554514 PDE8BO95263 885 aa18.25■□□□□ 0.51
ARHGEF40-203ENST00000554514 CYP19A1P11511 503 aaPredicted RBP18.25■□□□□ 0.51
ARHGEF40-203ENST00000554514 EVCP57679 992 aa18.25■□□□□ 0.51
ARHGEF40-203ENST00000554514 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.25■□□□□ 0.51
ARHGEF40-203ENST00000554514 DZIP3Q86Y13 1208 aaKnown RBP18.25■□□□□ 0.51
ARHGEF40-203ENST00000554514 ZNF592Q92610 1267 aa18.25■□□□□ 0.51
ARHGEF40-203ENST00000554514 AIDAQ96BJ3 306 aa18.25■□□□□ 0.51
ARHGEF40-203ENST00000554514 CHMP4CQ96CF2 233 aa18.25■□□□□ 0.51
ARHGEF40-203ENST00000554514 XIRP1Q702N8 1843 aaKnown RBP18.25■□□□□ 0.51
ARHGEF40-203ENST00000554514 PDE6AP16499 860 aa18.25■□□□□ 0.51
ARHGEF40-203ENST00000554514 TPD52L1Q16890 204 aaPredicted RBP18.25■□□□□ 0.51
ARHGEF40-203ENST00000554514 ZNF710Q8N1W2 664 aa18.25■□□□□ 0.51
ARHGEF40-203ENST00000554514 ALG1Q9BT22 464 aa18.25■□□□□ 0.51
ARHGEF40-203ENST00000554514 TOMM22Q9NS69 142 aa18.25■□□□□ 0.51
ARHGEF40-203ENST00000554514 SPEF2Q9C093 1822 aa18.24■□□□□ 0.51
ARHGEF40-203ENST00000554514 UBE2Q2LH0YL09 131 aa18.24■□□□□ 0.51
ARHGEF40-203ENST00000554514 TICAM2Q86XR7 235 aa18.24■□□□□ 0.51
ARHGEF40-203ENST00000554514 MAP7D2Q96T17 732 aa18.24■□□□□ 0.51
ARHGEF40-203ENST00000554514 ANGEL1Q9UNK9 670 aaKnown RBP18.24■□□□□ 0.51
ARHGEF40-203ENST00000554514 CAVIN2O95810 425 aa18.24■□□□□ 0.51
ARHGEF40-203ENST00000554514 CTDSPL2Q05D32 466 aa18.24■□□□□ 0.51
ARHGEF40-203ENST00000554514 DPCR1Q3MIW9 517 aa18.24■□□□□ 0.51
ARHGEF40-203ENST00000554514 KIF23Q02241 960 aaPredicted RBP18.23■□□□□ 0.51
ARHGEF40-203ENST00000554514 RRP12Q5JTH9 1297 aaKnown RBP18.23■□□□□ 0.51
ARHGEF40-203ENST00000554514 BCL2L12Q9HB09 334 aa18.23■□□□□ 0.51
ARHGEF40-203ENST00000554514 NEDD4P46934 1319 aa18.23■□□□□ 0.51
ARHGEF40-203ENST00000554514 CDC27P30260 824 aa18.23■□□□□ 0.51
ARHGEF40-203ENST00000554514 VGLL2Q8N8G2 317 aa18.23■□□□□ 0.51
ARHGEF40-203ENST00000554514 KCNG4Q8TDN1 519 aa18.23■□□□□ 0.51
ARHGEF40-203ENST00000554514 CDHR2Q9BYE9 1310 aa18.23■□□□□ 0.51
ARHGEF40-203ENST00000554514 UBN2Q6ZU65 1347 aa18.23■□□□□ 0.51
ARHGEF40-203ENST00000554514 PDE8AO60658 829 aa18.22■□□□□ 0.51
ARHGEF40-203ENST00000554514 TNNT1P13805 278 aa18.22■□□□□ 0.51
ARHGEF40-203ENST00000554514 TTF1Q15361 905 aaPredicted RBP18.22■□□□□ 0.51
ARHGEF40-203ENST00000554514 ANO1Q5XXA6 986 aa18.22■□□□□ 0.51
ARHGEF40-203ENST00000554514 MAGEB6Q8N7X4 407 aa18.22■□□□□ 0.51
ARHGEF40-203ENST00000554514 FBXL16Q8N461 479 aa18.22■□□□□ 0.51
ARHGEF40-203ENST00000554514 MYO5AQ9Y4I1 1855 aaKnown RBP18.22■□□□□ 0.51
ARHGEF40-203ENST00000554514 CCDC82Q8N4S0 544 aa18.22■□□□□ 0.51
ARHGEF40-203ENST00000554514 ARMT1Q9H993 441 aa18.22■□□□□ 0.51
ARHGEF40-203ENST00000554514 SEC31BQ9NQW1 1179 aa18.22■□□□□ 0.51
ARHGEF40-203ENST00000554514 ZNF202O95125 648 aa18.21■□□□□ 0.51
ARHGEF40-203ENST00000554514 MBD4O95243 580 aa18.21■□□□□ 0.51
ARHGEF40-203ENST00000554514 LRRC8AQ8IWT6 810 aa18.21■□□□□ 0.51
ARHGEF40-203ENST00000554514 ZKSCAN3Q9BRR0 538 aa18.21■□□□□ 0.51
ARHGEF40-203ENST00000554514 NAT10Q9H0A0 1025 aaKnown RBP18.21■□□□□ 0.51
ARHGEF40-203ENST00000554514 POLR3EQ9NVU0 708 aa18.21■□□□□ 0.51
ARHGEF40-203ENST00000554514 TRMT1Q9NXH9 659 aaKnown RBP18.21■□□□□ 0.51
ARHGEF40-203ENST00000554514 USP27XA6NNY8 438 aa18.21■□□□□ 0.51
ARHGEF40-203ENST00000554514 SH2B2O14492 632 aaPredicted RBP18.21■□□□□ 0.51
ARHGEF40-203ENST00000554514 SMC2O95347 1197 aa18.21■□□□□ 0.51
ARHGEF40-203ENST00000554514 SLC3A2P08195 630 aaKnown RBP18.21■□□□□ 0.51
ARHGEF40-203ENST00000554514 TMEM67Q5HYA8 995 aa18.21■□□□□ 0.51
ARHGEF40-203ENST00000554514 BRAPQ7Z569 592 aa18.21■□□□□ 0.51
ARHGEF40-203ENST00000554514 KIAA1468Q9P260 1216 aa18.21■□□□□ 0.51
ARHGEF40-203ENST00000554514 IQSEC3Q9UPP2 1182 aaPredicted RBP18.21■□□□□ 0.51
ARHGEF40-203ENST00000554514 ZMYM6O95789 1325 aa18.2■□□□□ 0.5
ARHGEF40-203ENST00000554514 WDHD1O75717 1129 aaPredicted RBP18.2■□□□□ 0.5
ARHGEF40-203ENST00000554514 PFKFB1P16118 471 aa18.2■□□□□ 0.5
ARHGEF40-203ENST00000554514 KRT40Q6A162 431 aa18.2■□□□□ 0.5
ARHGEF40-203ENST00000554514 APOA5Q6Q788 366 aa18.2■□□□□ 0.5
ARHGEF40-203ENST00000554514 VPS37DQ86XT2 251 aa18.2■□□□□ 0.5
ARHGEF40-203ENST00000554514 MROH7-TTC4A0A0A0MT08 1334 aa18.2■□□□□ 0.5
ARHGEF40-203ENST00000554514 CCDC69A6NI79 296 aa18.2■□□□□ 0.5
ARHGEF40-203ENST00000554514 GOLGA8AA7E2F4 631 aa18.2■□□□□ 0.5
ARHGEF40-203ENST00000554514 YEATS4O95619 227 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms