RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 RTL5Q5HYW3 569 aaPredicted RBP17.79■□□□□ 0.44
SHMT2-208ENST00000553868 LDLRAD1Q5T700 205 aa17.79■□□□□ 0.44
SHMT2-208ENST00000553868 DCAF8Q5TAQ9 597 aa17.79■□□□□ 0.44
SHMT2-208ENST00000553868 ARMC9Q7Z3E5 817 aa17.79■□□□□ 0.44
SHMT2-208ENST00000553868 FAM89AQ96GI7 184 aa17.79■□□□□ 0.44
SHMT2-208ENST00000553868 ANGEL1Q9UNK9 670 aaKnown RBP17.79■□□□□ 0.44
SHMT2-208ENST00000553868 IRS4O14654 1257 aaPredicted RBP17.78■□□□□ 0.44
SHMT2-208ENST00000553868 EPHA10Q5JZY3 1008 aa17.78■□□□□ 0.44
SHMT2-208ENST00000553868 LMBR1LQ6UX01 489 aa17.78■□□□□ 0.44
SHMT2-208ENST00000553868 CLMNQ96JQ2 1002 aa17.78■□□□□ 0.44
SHMT2-208ENST00000553868 MXD3Q9BW11 206 aa17.78■□□□□ 0.44
SHMT2-208ENST00000553868 LRRCC1Q9C099 1032 aa17.78■□□□□ 0.44
SHMT2-208ENST00000553868 NOP58Q9Y2X3 529 aaKnown RBP17.78■□□□□ 0.44
SHMT2-208ENST00000553868 PSME4Q14997 1843 aa17.77■□□□□ 0.44
SHMT2-208ENST00000553868 PDE8AO60658 829 aa17.77■□□□□ 0.44
SHMT2-208ENST00000553868 RGS3P49796 1198 aa17.77■□□□□ 0.44
SHMT2-208ENST00000553868 SP3Q02447 781 aa17.77■□□□□ 0.44
SHMT2-208ENST00000553868 OS9Q13438 667 aaPredicted RBP17.77■□□□□ 0.44
SHMT2-208ENST00000553868 SH3TC2Q8TF17 1288 aa17.77■□□□□ 0.44
SHMT2-208ENST00000553868 COL25A1Q9BXS0 654 aaPredicted RBP17.77■□□□□ 0.44
SHMT2-208ENST00000553868 LNPKQ9C0E8 428 aa17.77■□□□□ 0.44
SHMT2-208ENST00000553868 EXOC6BQ9Y2D4 811 aa17.77■□□□□ 0.44
SHMT2-208ENST00000553868 CHMP3Q9Y3E7 222 aa17.77■□□□□ 0.44
SHMT2-208ENST00000553868 VCANP13611 3396 aa17.77■□□□□ 0.43
SHMT2-208ENST00000553868 UFL1O94874 794 aa17.76■□□□□ 0.43
SHMT2-208ENST00000553868 SASH1O94885 1247 aa17.76■□□□□ 0.43
SHMT2-208ENST00000553868 G3BP1Q13283 466 aaKnown RBP eCLIP17.76■□□□□ 0.435e-8■■■■□ 19.7
SHMT2-208ENST00000553868 KIF1BPQ96EK5 621 aa17.76■□□□□ 0.43
SHMT2-208ENST00000553868 SLC10A4Q96EP9 437 aa17.76■□□□□ 0.43
SHMT2-208ENST00000553868 WNT10BO00744 389 aa17.75■□□□□ 0.43
SHMT2-208ENST00000553868 CTSWP56202 376 aa17.75■□□□□ 0.43
SHMT2-208ENST00000553868 INHBEP58166 350 aa17.75■□□□□ 0.43
SHMT2-208ENST00000553868 CCDC57Q2TAC2 916 aa17.75■□□□□ 0.43
SHMT2-208ENST00000553868 NBPF11Q86T75 865 aa17.75■□□□□ 0.43
SHMT2-208ENST00000553868 WNK4Q96J92 1243 aa17.75■□□□□ 0.43
SHMT2-208ENST00000553868 COPRSQ9NQ92 184 aa17.75■□□□□ 0.43
SHMT2-208ENST00000553868 APBB1O00213 710 aa17.74■□□□□ 0.43
SHMT2-208ENST00000553868 CSF1RP07333 972 aa17.74■□□□□ 0.43
SHMT2-208ENST00000553868 SHISA4Q96DD7 197 aa17.74■□□□□ 0.43
SHMT2-208ENST00000553868 PTPN18Q99952 460 aa17.74■□□□□ 0.43
SHMT2-208ENST00000553868 ZSWIM8A7E2V4 1837 aa17.73■□□□□ 0.43
SHMT2-208ENST00000553868 IFIT5Q13325 482 aaKnown RBP17.73■□□□□ 0.43
SHMT2-208ENST00000553868 FBXO3Q9UK99 471 aa17.73■□□□□ 0.43
SHMT2-208ENST00000553868 GJA5P36382 358 aa17.72■□□□□ 0.43
SHMT2-208ENST00000553868 RFX5P48382 616 aaPredicted RBP17.72■□□□□ 0.43
SHMT2-208ENST00000553868 SF3B3Q15393 1217 aaKnown RBP17.72■□□□□ 0.43
SHMT2-208ENST00000553868 TAF7LQ5H9L4 462 aa17.72■□□□□ 0.43
SHMT2-208ENST00000553868 RHPN1Q8TCX5 695 aa17.72■□□□□ 0.43
SHMT2-208ENST00000553868 ANKIB1Q9P2G1 1089 aa17.72■□□□□ 0.43
SHMT2-208ENST00000553868 LAMB1P07942 1786 aa17.71■□□□□ 0.43
SHMT2-208ENST00000553868 ANKRD18BA2A2Z9 1011 aa17.71■□□□□ 0.43
SHMT2-208ENST00000553868 USP17L3A6NCW0 530 aa17.71■□□□□ 0.43
SHMT2-208ENST00000553868 USP17L4A6NCW7 530 aa17.71■□□□□ 0.43
SHMT2-208ENST00000553868 ZBTB48P10074 688 aaPredicted RBP17.71■□□□□ 0.43
SHMT2-208ENST00000553868 PDE4AP27815 886 aa17.71■□□□□ 0.43
SHMT2-208ENST00000553868 RPS8P62241 208 aaKnown RBP17.71■□□□□ 0.43
SHMT2-208ENST00000553868 CCDC152Q4G0S7 254 aa17.71■□□□□ 0.43
SHMT2-208ENST00000553868 USP17L1Q7RTZ2 530 aa17.71■□□□□ 0.43
SHMT2-208ENST00000553868 TTLL11Q8NHH1 800 aa17.71■□□□□ 0.43
SHMT2-208ENST00000553868 PODXL2Q9NZ53 605 aa17.71■□□□□ 0.43
SHMT2-208ENST00000553868 GGA1Q9UJY5 639 aa17.71■□□□□ 0.43
SHMT2-208ENST00000553868 PA2G4Q9UQ80 394 aaKnown RBP17.71■□□□□ 0.43
SHMT2-208ENST00000553868 SKAP1Q86WV1 359 aa17.7■□□□□ 0.42
SHMT2-208ENST00000553868 CLASRPQ8N2M8 674 aaKnown RBP17.7■□□□□ 0.42
SHMT2-208ENST00000553868 SEC31BQ9NQW1 1179 aa17.7■□□□□ 0.42
SHMT2-208ENST00000553868 SSC5DA1L4H1 1573 aa17.7■□□□□ 0.42
SHMT2-208ENST00000553868 SMARCA5O60264 1052 aaPredicted RBP17.69■□□□□ 0.42
SHMT2-208ENST00000553868 CIAO1O76071 339 aa17.69■□□□□ 0.42
SHMT2-208ENST00000553868 MTFR1Q15390 333 aa17.69■□□□□ 0.42
SHMT2-208ENST00000553868 Q7L0L9 218 aa17.69■□□□□ 0.42
SHMT2-208ENST00000553868 SIL1Q9H173 461 aa17.69■□□□□ 0.42
SHMT2-208ENST00000553868 SPTBN5Q9NRC6 3674 aaKnown RBP17.68■□□□□ 0.42
SHMT2-208ENST00000553868 ZNF646O15015 1829 aaPredicted RBP17.68■□□□□ 0.42
SHMT2-208ENST00000553868 IL15P40933 162 aaPredicted RBP17.68■□□□□ 0.42
SHMT2-208ENST00000553868 FBXW7Q969H0 707 aa17.68■□□□□ 0.42
SHMT2-208ENST00000553868 ARHGAP39Q9C0H5 1083 aa17.68■□□□□ 0.42
SHMT2-208ENST00000553868 EYA2O00167 538 aa17.67■□□□□ 0.42
SHMT2-208ENST00000553868 ECM2O94769 699 aaPredicted RBP17.67■□□□□ 0.42
SHMT2-208ENST00000553868 ITGA6P23229 1130 aa17.67■□□□□ 0.42
SHMT2-208ENST00000553868 DACT2Q5SW24 774 aa17.67■□□□□ 0.42
SHMT2-208ENST00000553868 OTUD7BQ6GQQ9 843 aa17.67■□□□□ 0.42
SHMT2-208ENST00000553868 GPATCH3Q96I76 525 aa17.67■□□□□ 0.42
SHMT2-208ENST00000553868 GREM2Q9H772 168 aa17.67■□□□□ 0.42
SHMT2-208ENST00000553868 APOBEC3FQ8IUX4 373 aaKnown RBP17.66■□□□□ 0.42
SHMT2-208ENST00000553868 OGFOD1Q8N543 542 aa17.66■□□□□ 0.42
SHMT2-208ENST00000553868 KLHDC4Q8TBB5 520 aa17.66■□□□□ 0.42
SHMT2-208ENST00000553868 IL1RAPL2Q9NP60 686 aa17.66■□□□□ 0.42
SHMT2-208ENST00000553868 STAP2Q9UGK3 403 aa17.66■□□□□ 0.42
SHMT2-208ENST00000553868 MYH3P11055 1940 aa17.66■□□□□ 0.42
SHMT2-208ENST00000553868 AOX1Q06278 1338 aa17.66■□□□□ 0.42
SHMT2-208ENST00000553868 IFIT2P09913 472 aaKnown RBP17.65■□□□□ 0.42
SHMT2-208ENST00000553868 MAP3K11Q16584 847 aa17.65■□□□□ 0.42
SHMT2-208ENST00000553868 UBE2Q1Q7Z7E8 422 aa17.65■□□□□ 0.42
SHMT2-208ENST00000553868 PLEKHM2Q8IWE5 1019 aa17.65■□□□□ 0.42
SHMT2-208ENST00000553868 DEFB123Q8N688 67 aa17.65■□□□□ 0.42
SHMT2-208ENST00000553868 CCDC85AQ96PX6 553 aaPredicted RBP17.65■□□□□ 0.42
SHMT2-208ENST00000553868 CDC5LQ99459 802 aaKnown RBP17.65■□□□□ 0.42
SHMT2-208ENST00000553868 BCL11AQ9H165 835 aa17.65■□□□□ 0.42
SHMT2-208ENST00000553868 DEFB129Q9H1M3 183 aa17.65■□□□□ 0.42
SHMT2-208ENST00000553868 MX1P20591 662 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms