RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 USTQ9Y2C2 406 aa10.54□□□□□ -0.72
VPS29-203ENST00000546588 STARD3NLO95772 234 aa10.53□□□□□ -0.72
VPS29-203ENST00000546588 TRIM28Q13263 835 aaKnown RBP10.53□□□□□ -0.72
VPS29-203ENST00000546588 COPS6Q7L5N1 327 aa10.53□□□□□ -0.72
VPS29-203ENST00000546588 DNAJC10Q8IXB1 793 aa10.53□□□□□ -0.72
VPS29-203ENST00000546588 MEIS3Q99687 375 aa10.53□□□□□ -0.72
VPS29-203ENST00000546588 RWDD1Q9H446 243 aaPredicted RBP10.53□□□□□ -0.72
VPS29-203ENST00000546588 MAP3K2Q9Y2U5 619 aa10.53□□□□□ -0.72
VPS29-203ENST00000546588 NRXN2Q9P2S2 1712 aa10.53□□□□□ -0.72
VPS29-203ENST00000546588 KCNQ2O43526 872 aa10.52□□□□□ -0.73
VPS29-203ENST00000546588 PTCD1O75127 700 aaKnown RBP10.52□□□□□ -0.73
VPS29-203ENST00000546588 ANXA1P04083 346 aa10.52□□□□□ -0.73
VPS29-203ENST00000546588 IGKV5-2P06315 115 aa10.52□□□□□ -0.73
VPS29-203ENST00000546588 EIF5P55010 431 aaKnown RBP10.52□□□□□ -0.73
VPS29-203ENST00000546588 MFAP1P55081 439 aaKnown RBP10.52□□□□□ -0.73
VPS29-203ENST00000546588 CEP85Q6P2H3 762 aa10.52□□□□□ -0.73
VPS29-203ENST00000546588 XAGE3Q8WTP9 111 aa10.52□□□□□ -0.73
VPS29-203ENST00000546588 GCC1Q96CN9 775 aa10.52□□□□□ -0.73
VPS29-203ENST00000546588 RGS17Q9UGC6 210 aaPredicted RBP10.52□□□□□ -0.73
VPS29-203ENST00000546588 ARAP2Q8WZ64 1704 aa10.52□□□□□ -0.73
VPS29-203ENST00000546588 AK9Q5TCS8 1911 aa10.51□□□□□ -0.73
VPS29-203ENST00000546588 ERVV-1B6SEH8 477 aa10.51□□□□□ -0.73
VPS29-203ENST00000546588 PATL2C9JE40 543 aaKnown RBP10.51□□□□□ -0.73
VPS29-203ENST00000546588 FAM196AQ6ZSG2 479 aa10.51□□□□□ -0.73
VPS29-203ENST00000546588 KRT27Q7Z3Y8 459 aa10.51□□□□□ -0.73
VPS29-203ENST00000546588 NEURL1BA8MQ27 555 aa10.5□□□□□ -0.73
VPS29-203ENST00000546588 SIAH2O43255 324 aa10.5□□□□□ -0.73
VPS29-203ENST00000546588 BRD1O95696 1058 aa10.5□□□□□ -0.73
VPS29-203ENST00000546588 GNAI2P04899 355 aa10.5□□□□□ -0.73
VPS29-203ENST00000546588 JUNDP17535 347 aa10.5□□□□□ -0.73
VPS29-203ENST00000546588 HMGB2P26583 209 aaKnown RBP10.5□□□□□ -0.73
VPS29-203ENST00000546588 CASP7P55210 303 aa10.5□□□□□ -0.73
VPS29-203ENST00000546588 INSM1Q01101 510 aaPredicted RBP10.5□□□□□ -0.73
VPS29-203ENST00000546588 ITPK1Q13572 414 aa10.5□□□□□ -0.73
VPS29-203ENST00000546588 INTS5Q6P9B9 1019 aaKnown RBP10.5□□□□□ -0.73
VPS29-203ENST00000546588 TBC1D9Q6ZT07 1266 aa10.5□□□□□ -0.73
VPS29-203ENST00000546588 KIFC2Q96AC6 838 aa10.5□□□□□ -0.73
VPS29-203ENST00000546588 ANP32EQ9BTT0 268 aa10.5□□□□□ -0.73
VPS29-203ENST00000546588 ISCA1Q9BUE6 129 aa10.5□□□□□ -0.73
VPS29-203ENST00000546588 DCTPP1Q9H773 170 aa10.5□□□□□ -0.73
VPS29-203ENST00000546588 CCDC87Q9NVE4 849 aa10.5□□□□□ -0.73
VPS29-203ENST00000546588 HDAC5Q9UQL6 1122 aa10.5□□□□□ -0.73
VPS29-203ENST00000546588 ZBTB1Q9Y2K1 713 aa10.5□□□□□ -0.73
VPS29-203ENST00000546588 MAFBQ9Y5Q3 323 aaPredicted RBP10.5□□□□□ -0.73
VPS29-203ENST00000546588 MAP3K15Q6ZN16 1313 aa10.5□□□□□ -0.73
VPS29-203ENST00000546588 GRM8O00222 908 aa10.49□□□□□ -0.73
VPS29-203ENST00000546588 A1BGP04217 495 aa10.49□□□□□ -0.73
VPS29-203ENST00000546588 GCKRQ14397 625 aa10.49□□□□□ -0.73
VPS29-203ENST00000546588 RABL6Q3YEC7 729 aaPredicted RBP10.49□□□□□ -0.73
VPS29-203ENST00000546588 SLC4A10Q6U841 1118 aa10.49□□□□□ -0.73
VPS29-203ENST00000546588 CCDC24Q8N4L8 307 aa10.49□□□□□ -0.73
VPS29-203ENST00000546588 SSH3Q8TE77 659 aa10.49□□□□□ -0.73
VPS29-203ENST00000546588 ACSBG1Q96GR2 724 aa10.49□□□□□ -0.73
VPS29-203ENST00000546588 MTMR7Q9Y216 660 aa10.49□□□□□ -0.73
VPS29-203ENST00000546588 RIC1Q4ADV7 1423 aa10.49□□□□□ -0.73
VPS29-203ENST00000546588 MYL6BP14649 208 aa10.48□□□□□ -0.73
VPS29-203ENST00000546588 CRKLP46109 303 aaKnown RBP10.48□□□□□ -0.73
VPS29-203ENST00000546588 FGD1P98174 961 aa10.48□□□□□ -0.73
VPS29-203ENST00000546588 ATP8B2P98198 1209 aa10.48□□□□□ -0.73
VPS29-203ENST00000546588 KCNA1Q09470 495 aa10.48□□□□□ -0.73
VPS29-203ENST00000546588 NEXNQ0ZGT2 675 aa10.48□□□□□ -0.73
VPS29-203ENST00000546588 TTLL7Q6ZT98 887 aa10.48□□□□□ -0.73
VPS29-203ENST00000546588 CCDC191Q8NCU4 936 aa10.48□□□□□ -0.73
VPS29-203ENST00000546588 SYTL4Q96C24 671 aaPredicted RBP10.48□□□□□ -0.73
VPS29-203ENST00000546588 KAZALD1Q96I82 304 aa10.48□□□□□ -0.73
VPS29-203ENST00000546588 H7C1W4 665 aa10.47□□□□□ -0.73
VPS29-203ENST00000546588 PLSCR1O15162 318 aa10.47□□□□□ -0.73
VPS29-203ENST00000546588 NBPF7P0C2Y1 421 aaPredicted RBP10.47□□□□□ -0.73
VPS29-203ENST00000546588 UBTFL1P0CB47 393 aaPredicted RBP10.47□□□□□ -0.73
VPS29-203ENST00000546588 NUCB1Q02818 461 aa10.47□□□□□ -0.73
VPS29-203ENST00000546588 NR1H3Q13133 447 aa10.47□□□□□ -0.73
VPS29-203ENST00000546588 TCIRG1Q13488 830 aa10.47□□□□□ -0.73
VPS29-203ENST00000546588 HSP90AB3PQ58FF7 597 aa10.47□□□□□ -0.73
VPS29-203ENST00000546588 SLC27A3Q5K4L6 730 aa10.47□□□□□ -0.73
VPS29-203ENST00000546588 PTCRAQ6ISU1 281 aaPredicted RBP10.47□□□□□ -0.73
VPS29-203ENST00000546588 LYPD8Q6UX82 237 aa10.47□□□□□ -0.73
VPS29-203ENST00000546588 PTF1AQ7RTS3 328 aa10.47□□□□□ -0.73
VPS29-203ENST00000546588 LINC00116Q8NCU8 138 aa10.47□□□□□ -0.73
VPS29-203ENST00000546588 CDHR2Q9BYE9 1310 aa10.47□□□□□ -0.73
VPS29-203ENST00000546588 SPEF2Q9C093 1822 aa10.47□□□□□ -0.73
VPS29-203ENST00000546588 HMMRO75330 724 aa10.46□□□□□ -0.73
VPS29-203ENST00000546588 RXRBP28702 533 aa10.46□□□□□ -0.73
VPS29-203ENST00000546588 CWF19L2Q2TBE0 894 aaKnown RBP10.46□□□□□ -0.73
VPS29-203ENST00000546588 DESI1Q6ICB0 168 aa10.46□□□□□ -0.73
VPS29-203ENST00000546588 CLEC4GQ6UXB4 293 aa10.46□□□□□ -0.73
VPS29-203ENST00000546588 DHX37Q8IY37 1157 aaKnown RBP10.46□□□□□ -0.73
VPS29-203ENST00000546588 PLA2G12BQ9BX93 195 aa10.46□□□□□ -0.73
VPS29-203ENST00000546588 SALL3Q9BXA9 1300 aa10.45□□□□□ -0.74
VPS29-203ENST00000546588 ATP9BO43861 1147 aa10.45□□□□□ -0.74
VPS29-203ENST00000546588 FBXO45P0C2W1 286 aa10.45□□□□□ -0.74
VPS29-203ENST00000546588 KIF6Q6ZMV9 814 aa10.45□□□□□ -0.74
VPS29-203ENST00000546588 ZNF34Q8IZ26 560 aa10.45□□□□□ -0.74
VPS29-203ENST00000546588 RGS22Q8NE09 1264 aa10.45□□□□□ -0.74
VPS29-203ENST00000546588 MYD88Q99836 296 aa10.45□□□□□ -0.74
VPS29-203ENST00000546588 NOP58Q9Y2X3 529 aaKnown RBP10.45□□□□□ -0.74
VPS29-203ENST00000546588 LRRFIP2Q9Y608 721 aaKnown RBP10.45□□□□□ -0.74
VPS29-203ENST00000546588 A0A087WZG4 1122 aa10.44□□□□□ -0.74
VPS29-203ENST00000546588 RPS6KA4O75676 772 aa10.44□□□□□ -0.74
VPS29-203ENST00000546588 CAMTA2O94983 1202 aa10.44□□□□□ -0.74
VPS29-203ENST00000546588 ATG7O95352 703 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms