RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 TTF1Q15361 905 aaPredicted RBP25.29■■□□□ 1.64
CD44-222ENST00000526025 C16orf71Q8IYS4 520 aaPredicted RBP25.29■■□□□ 1.64
CD44-222ENST00000526025 ZC3H15Q8WU90 426 aaKnown RBP25.29■■□□□ 1.64
CD44-222ENST00000526025 BCL11AQ9H165 835 aa25.29■■□□□ 1.64
CD44-222ENST00000526025 SNRKQ9NRH2 765 aa25.29■■□□□ 1.64
CD44-222ENST00000526025 PPP4R2Q9NY27 417 aa25.29■■□□□ 1.64
CD44-222ENST00000526025 AOX1Q06278 1338 aa25.29■■□□□ 1.64
CD44-222ENST00000526025 PRDX5P30044 214 aa25.28■■□□□ 1.64
CD44-222ENST00000526025 GRIK5Q16478 980 aa25.28■■□□□ 1.64
CD44-222ENST00000526025 KIF4BQ2VIQ3 1234 aa25.28■■□□□ 1.64
CD44-222ENST00000526025 ERICH6Q7L0X2 663 aa25.28■■□□□ 1.64
CD44-222ENST00000526025 OTUD7AQ8TE49 926 aaPredicted RBP25.28■■□□□ 1.64
CD44-222ENST00000526025 ZBED3Q96IU2 234 aaPredicted RBP25.28■■□□□ 1.64
CD44-222ENST00000526025 ABCF2Q9UG63 623 aa25.28■■□□□ 1.64
CD44-222ENST00000526025 F8W031 263 aaPredicted RBP25.27■■□□□ 1.64
CD44-222ENST00000526025 GLRX3O76003 335 aaKnown RBP25.27■■□□□ 1.64
CD44-222ENST00000526025 HHIPL2Q6UWX4 724 aa25.27■■□□□ 1.64
CD44-222ENST00000526025 SAMD7Q7Z3H4 446 aa25.27■■□□□ 1.64
CD44-222ENST00000526025 LDHDQ86WU2 507 aa25.27■■□□□ 1.64
CD44-222ENST00000526025 TRPM4Q8TD43 1214 aa25.27■■□□□ 1.64
CD44-222ENST00000526025 PGAP2Q9UHJ9 254 aa25.27■■□□□ 1.64
CD44-222ENST00000526025 PDE1AP54750 535 aa25.26■■□□□ 1.63
CD44-222ENST00000526025 TBC1D10BQ4KMP7 808 aaPredicted RBP25.26■■□□□ 1.63
CD44-222ENST00000526025 SLF2Q8IX21 1173 aa25.26■■□□□ 1.63
CD44-222ENST00000526025 PI4K2BQ8TCG2 481 aa25.26■■□□□ 1.63
CD44-222ENST00000526025 TEKT1Q969V4 418 aa25.26■■□□□ 1.63
CD44-222ENST00000526025 BOLA2Q9H3K6 86 aa25.26■■□□□ 1.63
CD44-222ENST00000526025 OSBPL3Q9H4L5 887 aa25.26■■□□□ 1.63
CD44-222ENST00000526025 CRKP46108 304 aa25.25■■□□□ 1.63
CD44-222ENST00000526025 HIRAP54198 1017 aaPredicted RBP25.25■■□□□ 1.63
CD44-222ENST00000526025 TBC1D9Q6ZT07 1266 aa25.25■■□□□ 1.63
CD44-222ENST00000526025 ZDHHC15Q96MV8 337 aa25.25■■□□□ 1.63
CD44-222ENST00000526025 LRP2BPQ9P2M1 347 aa25.25■■□□□ 1.63
CD44-222ENST00000526025 POLR2AP24928 1970 aaKnown RBP25.24■■□□□ 1.63
CD44-222ENST00000526025 SPDYE2BA6NHP3 402 aa25.24■■□□□ 1.63
CD44-222ENST00000526025 TOMM70O94826 608 aa25.24■■□□□ 1.63
CD44-222ENST00000526025 EGFRP00533 1210 aa25.24■■□□□ 1.63
CD44-222ENST00000526025 SPDYE6P0CI01 402 aa25.24■■□□□ 1.63
CD44-222ENST00000526025 GSTO1P78417 241 aa25.24■■□□□ 1.63
CD44-222ENST00000526025 DLGAP5Q15398 846 aa25.24■■□□□ 1.63
CD44-222ENST00000526025 CFAP100Q494V2 611 aa25.24■■□□□ 1.63
CD44-222ENST00000526025 EAPPQ56P03 285 aaPredicted RBP25.24■■□□□ 1.63
CD44-222ENST00000526025 DZIP1Q86YF9 867 aaKnown RBP25.24■■□□□ 1.63
CD44-222ENST00000526025 RBM46Q8TBY0 533 aaKnown RBP25.24■■□□□ 1.63
CD44-222ENST00000526025 FAM163AQ96GL9 167 aaPredicted RBP25.24■■□□□ 1.63
CD44-222ENST00000526025 PIH1D3Q9NQM4 214 aaKnown RBP25.24■■□□□ 1.63
CD44-222ENST00000526025 PAG1Q9NWQ8 432 aa25.24■■□□□ 1.63
CD44-222ENST00000526025 GAKO14976 1311 aa25.23■■□□□ 1.63
CD44-222ENST00000526025 WNT10BO00744 389 aa25.23■■□□□ 1.63
CD44-222ENST00000526025 PLEKHM2Q8IWE5 1019 aa25.23■■□□□ 1.63
CD44-222ENST00000526025 NSUN4Q96CB9 384 aaKnown RBP25.23■■□□□ 1.63
CD44-222ENST00000526025 DNAJC2Q99543 621 aaKnown RBP25.23■■□□□ 1.63
CD44-222ENST00000526025 PITPNM2Q9BZ72 1349 aa25.22■■□□□ 1.63
CD44-222ENST00000526025 MECOMQ03112 1051 aa25.22■■□□□ 1.63
CD44-222ENST00000526025 ANTXR1Q9H6X2 564 aa25.22■■□□□ 1.63
CD44-222ENST00000526025 RAI14Q9P0K7 980 aa25.22■■□□□ 1.63
CD44-222ENST00000526025 GOLIM4O00461 696 aa25.21■■□□□ 1.63
CD44-222ENST00000526025 LDHCP07864 332 aa25.21■■□□□ 1.63
CD44-222ENST00000526025 MAP3K12Q12852 859 aa25.21■■□□□ 1.63
CD44-222ENST00000526025 RBM26Q5T8P6 1007 aaKnown RBP25.21■■□□□ 1.63
CD44-222ENST00000526025 TSHZ3Q63HK5 1081 aa25.21■■□□□ 1.63
CD44-222ENST00000526025 NDUFB9Q9Y6M9 179 aa25.21■■□□□ 1.63
CD44-222ENST00000526025 MYO1BO43795 1136 aa25.2■■□□□ 1.62
CD44-222ENST00000526025 CHADLQ6NUI6 762 aa25.2■■□□□ 1.62
CD44-222ENST00000526025 SMC1BQ8NDV3 1235 aa25.2■■□□□ 1.62
CD44-222ENST00000526025 ZNF384Q8TF68 577 aa25.2■■□□□ 1.62
CD44-222ENST00000526025 DAGLAQ9Y4D2 1042 aa25.2■■□□□ 1.62
CD44-222ENST00000526025 MROH7-TTC4A0A0A0MT08 1334 aa25.19■■□□□ 1.62
CD44-222ENST00000526025 POTEIP0CG38 1075 aa25.19■■□□□ 1.62
CD44-222ENST00000526025 POTEJP0CG39 1038 aa25.19■■□□□ 1.62
CD44-222ENST00000526025 RBM5P52756 815 aaKnown RBP eCLIP25.19■■□□□ 1.62
CD44-222ENST00000526025 DIXDC1Q155Q3 683 aa25.19■■□□□ 1.62
CD44-222ENST00000526025 NBPF9Q3BBW0 867 aa25.19■■□□□ 1.62
CD44-222ENST00000526025 PRMT6Q96LA8 375 aaPredicted RBP25.19■■□□□ 1.62
CD44-222ENST00000526025 AK9Q5TCS8 1911 aa25.19■■□□□ 1.62
CD44-222ENST00000526025 IDH1O75874 414 aaKnown RBP25.18■■□□□ 1.62
CD44-222ENST00000526025 PDE4AP27815 886 aa25.18■■□□□ 1.62
CD44-222ENST00000526025 FSTL1Q12841 308 aa25.18■■□□□ 1.62
CD44-222ENST00000526025 APOBEC3HQ6NTF7 200 aaKnown RBP25.18■■□□□ 1.62
CD44-222ENST00000526025 TICAM2Q86XR7 235 aa25.18■■□□□ 1.62
CD44-222ENST00000526025 DDX24Q9GZR7 859 aaKnown RBP eCLIP25.18■■□□□ 1.62
CD44-222ENST00000526025 MAP4K4O95819 1239 aaPredicted RBP25.17■■□□□ 1.62
CD44-222ENST00000526025 SPDYE2Q495Y8 402 aa25.17■■□□□ 1.62
CD44-222ENST00000526025 NAA16Q6N069 864 aaPredicted RBP25.17■■□□□ 1.62
CD44-222ENST00000526025 KBTBD3Q8NAB2 608 aa25.17■■□□□ 1.62
CD44-222ENST00000526025 CLEC11AQ9Y240 323 aa25.17■■□□□ 1.62
CD44-222ENST00000526025 GPR75-ASB3A0A0A6YYF3 556 aa25.16■■□□□ 1.62
CD44-222ENST00000526025 EDC3Q96F86 508 aaKnown RBP25.16■■□□□ 1.62
CD44-222ENST00000526025 GGA3Q9NZ52 723 aa25.16■■□□□ 1.62
CD44-222ENST00000526025 ZSCAN25Q6NSZ9 544 aa25.15■■□□□ 1.62
CD44-222ENST00000526025 CERS3Q8IU89 383 aa25.15■■□□□ 1.62
CD44-222ENST00000526025 APOBEC3FQ8IUX4 373 aaKnown RBP25.15■■□□□ 1.62
CD44-222ENST00000526025 DCPSQ96C86 337 aaKnown RBP25.15■■□□□ 1.62
CD44-222ENST00000526025 PCDHAC2Q9Y5I4 1007 aa25.15■■□□□ 1.62
CD44-222ENST00000526025 PDE6AP16499 860 aa25.14■■□□□ 1.62
CD44-222ENST00000526025 LRRFIP1Q32MZ4 808 aaKnown RBP25.14■■□□□ 1.62
CD44-222ENST00000526025 ANGEL2Q5VTE6 544 aaKnown RBP25.14■■□□□ 1.62
CD44-222ENST00000526025 FKBP1CQ5VVH2 108 aa25.14■■□□□ 1.62
CD44-222ENST00000526025 TRPM7Q96QT4 1865 aa25.14■■□□□ 1.61
CD44-222ENST00000526025 CDK5RAP2Q96SN8 1893 aa25.14■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms