RNA–Protein interactions for RNA: ENST00000524481.5

PTPRK-216, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 3,157 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-216ENST00000524481 ITGB4P16144 1822 aa13.83□□□□□ -0.2
PTPRK-216ENST00000524481 hCG_1642624A0A1W2PR95 340 aa13.83□□□□□ -0.2
PTPRK-216ENST00000524481 HMGB1P09429 215 aaKnown RBP13.83□□□□□ -0.2
PTPRK-216ENST00000524481 PDCP20941 246 aa13.83□□□□□ -0.2
PTPRK-216ENST00000524481 PTMSP20962 102 aa13.83□□□□□ -0.2
PTPRK-216ENST00000524481 NAA16Q6N069 864 aaPredicted RBP13.83□□□□□ -0.2
PTPRK-216ENST00000524481 TBC1D10CQ8IV04 446 aa13.83□□□□□ -0.2
PTPRK-216ENST00000524481 IFNL3Q8IZI9 196 aa13.83□□□□□ -0.2
PTPRK-216ENST00000524481 NYXQ9GZU5 481 aa13.83□□□□□ -0.2
PTPRK-216ENST00000524481 ABCC12Q96J65 1359 aa13.83□□□□□ -0.2
PTPRK-216ENST00000524481 PRDX5P30044 214 aa13.82□□□□□ -0.2
PTPRK-216ENST00000524481 TMEM67Q5HYA8 995 aa13.82□□□□□ -0.2
PTPRK-216ENST00000524481 GTF3C6Q969F1 213 aa13.82□□□□□ -0.2
PTPRK-216ENST00000524481 SPATA32Q96LK8 384 aa13.82□□□□□ -0.2
PTPRK-216ENST00000524481 ABCA3Q99758 1704 aa13.82□□□□□ -0.2
PTPRK-216ENST00000524481 G3V3G9 751 aa13.82□□□□□ -0.2
PTPRK-216ENST00000524481 PDIA3P30101 505 aaKnown RBP13.82□□□□□ -0.2
PTPRK-216ENST00000524481 HIBADHP31937 336 aaKnown RBP13.82□□□□□ -0.2
PTPRK-216ENST00000524481 KRT85P78386 507 aa13.82□□□□□ -0.2
PTPRK-216ENST00000524481 DCAF8Q5TAQ9 597 aa13.82□□□□□ -0.2
PTPRK-216ENST00000524481 CKAP2LQ8IYA6 745 aa13.82□□□□□ -0.2
PTPRK-216ENST00000524481 AIFM3Q96NN9 605 aa13.82□□□□□ -0.2
PTPRK-216ENST00000524481 NACAP1Q9BZK3 213 aa13.82□□□□□ -0.2
PTPRK-216ENST00000524481 SLIT2O94813 1529 aa13.82□□□□□ -0.2
PTPRK-216ENST00000524481 RIC1Q4ADV7 1423 aa13.82□□□□□ -0.2
PTPRK-216ENST00000524481 RPAP1Q9BWH6 1393 aaPredicted RBP13.81□□□□□ -0.2
PTPRK-216ENST00000524481 OLFM4Q6UX06 510 aa13.81□□□□□ -0.2
PTPRK-216ENST00000524481 MFSD6Q6ZSS7 791 aa13.81□□□□□ -0.2
PTPRK-216ENST00000524481 FAM84BQ96KN1 310 aaPredicted RBP13.81□□□□□ -0.2
PTPRK-216ENST00000524481 STRBPQ96SI9 672 aaKnown RBP13.81□□□□□ -0.2
PTPRK-216ENST00000524481 COL16A1Q07092 1604 aaPredicted RBP13.81□□□□□ -0.2
PTPRK-216ENST00000524481 SPATA31A6Q5VVP1 1343 aa13.81□□□□□ -0.2
PTPRK-216ENST00000524481 ADGRA1Q86SQ6 560 aa13.81□□□□□ -0.2
PTPRK-216ENST00000524481 ORC3Q9UBD5 711 aaPredicted RBP13.81□□□□□ -0.2
PTPRK-216ENST00000524481 MAGEB6P1A0A0J9YX57 407 aa13.81□□□□□ -0.2
PTPRK-216ENST00000524481 FOXP2O15409 715 aa13.81□□□□□ -0.2
PTPRK-216ENST00000524481 FGFR2P21802 821 aa13.81□□□□□ -0.2
PTPRK-216ENST00000524481 SF3A1Q15459 793 aaKnown RBP13.81□□□□□ -0.2
PTPRK-216ENST00000524481 CYB5R4Q7L1T6 521 aa13.81□□□□□ -0.2
PTPRK-216ENST00000524481 DZIP1Q86YF9 867 aaKnown RBP13.81□□□□□ -0.2
PTPRK-216ENST00000524481 PLEKHG2Q9H7P9 1386 aa13.8□□□□□ -0.2
PTPRK-216ENST00000524481 UBE2Q2LH0YL09 131 aa13.8□□□□□ -0.2
PTPRK-216ENST00000524481 SERPINB2P05120 415 aa13.8□□□□□ -0.2
PTPRK-216ENST00000524481 RBSNQ9H1K0 784 aa13.8□□□□□ -0.2
PTPRK-216ENST00000524481 BSDC1Q9NW68 430 aaPredicted RBP13.8□□□□□ -0.2
PTPRK-216ENST00000524481 EVX2Q03828 476 aa13.8□□□□□ -0.2
PTPRK-216ENST00000524481 MYH14Q7Z406 1995 aaKnown RBP13.8□□□□□ -0.2
PTPRK-216ENST00000524481 CCDC69A6NI79 296 aa13.79□□□□□ -0.2
PTPRK-216ENST00000524481 SYNE3Q6ZMZ3 975 aa13.79□□□□□ -0.2
PTPRK-216ENST00000524481 ERICH2A1L162 156 aa13.79□□□□□ -0.2
PTPRK-216ENST00000524481 MBD3O95983 291 aa13.79□□□□□ -0.2
PTPRK-216ENST00000524481 DIXDC1Q155Q3 683 aa13.79□□□□□ -0.2
PTPRK-216ENST00000524481 ERCC4Q92889 916 aaPredicted RBP13.79□□□□□ -0.2
PTPRK-216ENST00000524481 ZNF622Q969S3 477 aaKnown RBP eCLIP13.79□□□□□ -0.2
PTPRK-216ENST00000524481 ZSWIM5Q9P217 1185 aa13.79□□□□□ -0.2
PTPRK-216ENST00000524481 AHDC1Q5TGY3 1603 aaPredicted RBP13.79□□□□□ -0.2
PTPRK-216ENST00000524481 ZNF804BA4D1E1 1349 aa13.79□□□□□ -0.2
PTPRK-216ENST00000524481 DOT1LQ8TEK3 1739 aa13.79□□□□□ -0.2
PTPRK-216ENST00000524481 PATL2C9JE40 543 aaKnown RBP13.79□□□□□ -0.2
PTPRK-216ENST00000524481 UBE3CQ15386 1083 aa13.79□□□□□ -0.2
PTPRK-216ENST00000524481 KCNB2Q92953 911 aa13.79□□□□□ -0.2
PTPRK-216ENST00000524481 SYAP1Q96A49 352 aaPredicted RBP13.79□□□□□ -0.2
PTPRK-216ENST00000524481 ISY1Q9ULR0 285 aaKnown RBP13.79□□□□□ -0.2
PTPRK-216ENST00000524481 UFL1O94874 794 aa13.78□□□□□ -0.2
PTPRK-216ENST00000524481 ARID4AP29374 1257 aaPredicted RBP13.78□□□□□ -0.2
PTPRK-216ENST00000524481 ME1P48163 572 aa13.78□□□□□ -0.2
PTPRK-216ENST00000524481 METAP2P50579 478 aaKnown RBP eCLIP13.78□□□□□ -0.2
PTPRK-216ENST00000524481 TXNRD1Q16881 649 aa13.78□□□□□ -0.2
PTPRK-216ENST00000524481 TTC6Q86TZ1 520 aa13.78□□□□□ -0.2
PTPRK-216ENST00000524481 USP17L12C9JPN9 530 aa13.78□□□□□ -0.2
PTPRK-216ENST00000524481 USP17L21D6R901 530 aa13.78□□□□□ -0.2
PTPRK-216ENST00000524481 PTMAP06454 111 aaKnown RBP13.78□□□□□ -0.2
PTPRK-216ENST00000524481 C8orf76Q96K31 380 aa13.78□□□□□ -0.2
PTPRK-216ENST00000524481 UBAC1Q9BSL1 405 aa13.78□□□□□ -0.2
PTPRK-216ENST00000524481 EPB41L4AQ9HCS5 686 aaPredicted RBP13.78□□□□□ -0.2
PTPRK-216ENST00000524481 SLC12A7Q9Y666 1083 aa13.78□□□□□ -0.2
PTPRK-216ENST00000524481 NEDD4P46934 1319 aa13.78□□□□□ -0.2
PTPRK-216ENST00000524481 SHANK3Q9BYB0 1731 aa13.78□□□□□ -0.2
PTPRK-216ENST00000524481 EXOSC10Q01780 885 aaKnown RBP13.77□□□□□ -0.2
PTPRK-216ENST00000524481 FAM47AQ5JRC9 791 aa13.77□□□□□ -0.2
PTPRK-216ENST00000524481 NSUN7Q8NE18 718 aaKnown RBP13.77□□□□□ -0.2
PTPRK-216ENST00000524481 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.77□□□□□ -0.2
PTPRK-216ENST00000524481 SLC26A6Q9BXS9 759 aa13.77□□□□□ -0.2
PTPRK-216ENST00000524481 GSG1L2A8MUP6 293 aa13.77□□□□□ -0.21
PTPRK-216ENST00000524481 RAD21O60216 631 aa13.77□□□□□ -0.21
PTPRK-216ENST00000524481 SF3B3Q15393 1217 aaKnown RBP13.77□□□□□ -0.21
PTPRK-216ENST00000524481 LRP6O75581 1613 aa13.77□□□□□ -0.21
PTPRK-216ENST00000524481 GLI3P10071 1580 aa13.77□□□□□ -0.21
PTPRK-216ENST00000524481 A0A087WWV3 80 aa13.77□□□□□ -0.21
PTPRK-216ENST00000524481 GOLGA8AA7E2F4 631 aa13.77□□□□□ -0.21
PTPRK-216ENST00000524481 CTDNEP1O95476 244 aa13.77□□□□□ -0.21
PTPRK-216ENST00000524481 ANTXR2P58335 489 aa13.77□□□□□ -0.21
PTPRK-216ENST00000524481 TSGA10IPQ3SY00 556 aa13.77□□□□□ -0.21
PTPRK-216ENST00000524481 SAP30BPQ9UHR5 308 aaKnown RBP13.77□□□□□ -0.21
PTPRK-216ENST00000524481 USP5P45974 858 aa13.76□□□□□ -0.21
PTPRK-216ENST00000524481 ST5P78524 1137 aa13.76□□□□□ -0.21
PTPRK-216ENST00000524481 UBE4AQ14139 1066 aa13.76□□□□□ -0.21
PTPRK-216ENST00000524481 PRR5LQ6MZQ0 368 aa13.76□□□□□ -0.21
PTPRK-216ENST00000524481 KIF3AQ9Y496 699 aa13.76□□□□□ -0.21
PTPRK-216ENST00000524481 ZBTB43O43298 467 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms