RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 APOBEC3HQ6NTF7 200 aaKnown RBP14.01□□□□□ -0.17
LIMCH1-214ENST00000512228 REM2Q8IYK8 340 aaPredicted RBP14.01□□□□□ -0.17
LIMCH1-214ENST00000512228 CNKSR2Q8WXI2 1034 aa14.01□□□□□ -0.17
LIMCH1-214ENST00000512228 TMEM39BQ9GZU3 492 aa14.01□□□□□ -0.17
LIMCH1-214ENST00000512228 COL1A1P02452 1464 aaPredicted RBP14□□□□□ -0.17
LIMCH1-214ENST00000512228 OTOFQ9HC10 1997 aa14□□□□□ -0.17
LIMCH1-214ENST00000512228 IGF2BP3O00425 579 aaKnown RBP eCLIP14□□□□□ -0.17
LIMCH1-214ENST00000512228 MYO1BO43795 1136 aa14□□□□□ -0.17
LIMCH1-214ENST00000512228 CAP1Q01518 475 aa14□□□□□ -0.17
LIMCH1-214ENST00000512228 PPP1R3FQ6ZSY5 799 aaPredicted RBP14□□□□□ -0.17
LIMCH1-214ENST00000512228 VPS37DQ86XT2 251 aa14□□□□□ -0.17
LIMCH1-214ENST00000512228 MIER1Q8N108 512 aa14□□□□□ -0.17
LIMCH1-214ENST00000512228 WNK4Q96J92 1243 aa14□□□□□ -0.17
LIMCH1-214ENST00000512228 PTPN18Q99952 460 aa14□□□□□ -0.17
LIMCH1-214ENST00000512228 PPP2R3BQ9Y5P8 575 aa14□□□□□ -0.17
LIMCH1-214ENST00000512228 GPR25O00155 361 aa13.99□□□□□ -0.17
LIMCH1-214ENST00000512228 UBTFL1P0CB47 393 aaPredicted RBP13.99□□□□□ -0.17
LIMCH1-214ENST00000512228 ADORA1P30542 326 aa13.99□□□□□ -0.17
LIMCH1-214ENST00000512228 PUM3Q15397 648 aaKnown RBP13.99□□□□□ -0.17
LIMCH1-214ENST00000512228 SUPT20HL1Q3ZLR7 823 aa13.99□□□□□ -0.17
LIMCH1-214ENST00000512228 CAVIN4Q5BKX8 364 aa13.99□□□□□ -0.17
LIMCH1-214ENST00000512228 PPP1R12BO60237 982 aaPredicted RBP13.98□□□□□ -0.17
LIMCH1-214ENST00000512228 IFNL1Q8IU54 200 aa13.98□□□□□ -0.17
LIMCH1-214ENST00000512228 ZDHHC15Q96MV8 337 aa13.98□□□□□ -0.17
LIMCH1-214ENST00000512228 LAMB1P07942 1786 aa13.98□□□□□ -0.17
LIMCH1-214ENST00000512228 MYH13Q9UKX3 1938 aa13.98□□□□□ -0.17
LIMCH1-214ENST00000512228 FRAT2O75474 233 aaPredicted RBP13.97□□□□□ -0.17
LIMCH1-214ENST00000512228 IFIT1P09914 478 aaKnown RBP13.97□□□□□ -0.17
LIMCH1-214ENST00000512228 CT47B1P0C2W7 299 aaPredicted RBP13.97□□□□□ -0.17
LIMCH1-214ENST00000512228 PHKA1P46020 1223 aa13.97□□□□□ -0.17
LIMCH1-214ENST00000512228 TIMM10P62072 90 aa13.97□□□□□ -0.17
LIMCH1-214ENST00000512228 INTS3Q68E01 1043 aaKnown RBP13.97□□□□□ -0.17
LIMCH1-214ENST00000512228 CTU1Q7Z7A3 348 aaKnown RBP13.97□□□□□ -0.17
LIMCH1-214ENST00000512228 LPIN2Q92539 896 aa13.97□□□□□ -0.17
LIMCH1-214ENST00000512228 MS4A4AQ96JQ5 239 aa13.97□□□□□ -0.17
LIMCH1-214ENST00000512228 MRIQ9BWK5 157 aa13.97□□□□□ -0.17
LIMCH1-214ENST00000512228 API5Q9BZZ5 524 aaKnown RBP13.97□□□□□ -0.17
LIMCH1-214ENST00000512228 ELP3Q9H9T3 547 aa13.97□□□□□ -0.17
LIMCH1-214ENST00000512228 CIAO1O76071 339 aa13.96□□□□□ -0.17
LIMCH1-214ENST00000512228 TRIM27P14373 513 aa13.96□□□□□ -0.17
LIMCH1-214ENST00000512228 SOX10P56693 466 aa13.96□□□□□ -0.17
LIMCH1-214ENST00000512228 HDLBPQ00341 1268 aaKnown RBP13.96□□□□□ -0.17
LIMCH1-214ENST00000512228 DIXDC1Q155Q3 683 aa13.96□□□□□ -0.17
LIMCH1-214ENST00000512228 ZFPM1Q8IX07 1006 aa13.96□□□□□ -0.17
LIMCH1-214ENST00000512228 ARHGAP45Q92619 1136 aa13.96□□□□□ -0.17
LIMCH1-214ENST00000512228 TEKT1Q969V4 418 aa13.96□□□□□ -0.17
LIMCH1-214ENST00000512228 CFHR5Q9BXR6 569 aa13.96□□□□□ -0.17
LIMCH1-214ENST00000512228 COPRSQ9NQ92 184 aa13.96□□□□□ -0.17
LIMCH1-214ENST00000512228 KIF16BQ96L93 1317 aa13.95□□□□□ -0.18
LIMCH1-214ENST00000512228 SLC5A1P13866 664 aa13.95□□□□□ -0.18
LIMCH1-214ENST00000512228 PRDX5P30044 214 aa13.95□□□□□ -0.18
LIMCH1-214ENST00000512228 ATP2B3Q16720 1220 aa13.95□□□□□ -0.18
LIMCH1-214ENST00000512228 ANKRD13AQ8IZ07 590 aa13.95□□□□□ -0.18
LIMCH1-214ENST00000512228 TBC1D22AQ8WUA7 517 aa13.95□□□□□ -0.18
LIMCH1-214ENST00000512228 OPTNQ96CV9 577 aa13.95□□□□□ -0.18
LIMCH1-214ENST00000512228 CEP126Q9P2H0 1117 aa13.95□□□□□ -0.18
LIMCH1-214ENST00000512228 HPS5Q9UPZ3 1129 aa13.95□□□□□ -0.18
LIMCH1-214ENST00000512228 TESPA1A2RU30 521 aaPredicted RBP13.94□□□□□ -0.18
LIMCH1-214ENST00000512228 MANSC4A6NHS7 340 aaPredicted RBP13.94□□□□□ -0.18
LIMCH1-214ENST00000512228 SLURP2P0DP57 97 aa13.94□□□□□ -0.18
LIMCH1-214ENST00000512228 ZBTB48P10074 688 aaPredicted RBP13.94□□□□□ -0.18
LIMCH1-214ENST00000512228 IREB2P48200 963 aaKnown RBP13.94□□□□□ -0.18
LIMCH1-214ENST00000512228 MAP3K9P80192 1104 aa13.94□□□□□ -0.18
LIMCH1-214ENST00000512228 MLLT1Q03111 559 aaPredicted RBP13.94□□□□□ -0.18
LIMCH1-214ENST00000512228 SREBF2Q12772 1141 aa13.94□□□□□ -0.18
LIMCH1-214ENST00000512228 NFIAQ12857 509 aa13.94□□□□□ -0.18
LIMCH1-214ENST00000512228 VGLL4Q14135 290 aa13.94□□□□□ -0.18
LIMCH1-214ENST00000512228 CDC42EP5Q6NZY7 148 aa13.94□□□□□ -0.18
LIMCH1-214ENST00000512228 HHIPL2Q6UWX4 724 aa13.94□□□□□ -0.18
LIMCH1-214ENST00000512228 MIGA2Q7L4E1 593 aa13.94□□□□□ -0.18
LIMCH1-214ENST00000512228 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.94□□□□□ -0.18
LIMCH1-214ENST00000512228 ZKSCAN4Q969J2 545 aaPredicted RBP13.94□□□□□ -0.18
LIMCH1-214ENST00000512228 CLUAP1Q96AJ1 413 aa13.94□□□□□ -0.18
LIMCH1-214ENST00000512228 DAGLAQ9Y4D2 1042 aa13.94□□□□□ -0.18
LIMCH1-214ENST00000512228 PNMA6EA0A0J9YXQ4 647 aa13.93□□□□□ -0.18
LIMCH1-214ENST00000512228 FKTNO75072 461 aa13.93□□□□□ -0.18
LIMCH1-214ENST00000512228 IL15P40933 162 aaPredicted RBP13.93□□□□□ -0.18
LIMCH1-214ENST00000512228 TFCP2Q12800 502 aa13.93□□□□□ -0.18
LIMCH1-214ENST00000512228 CRHR2Q13324 411 aa13.93□□□□□ -0.18
LIMCH1-214ENST00000512228 TNFAIP1Q13829 316 aa13.93□□□□□ -0.18
LIMCH1-214ENST00000512228 NOM1Q5C9Z4 860 aaKnown RBP13.93□□□□□ -0.18
LIMCH1-214ENST00000512228 CCDC102BQ68D86 513 aa13.93□□□□□ -0.18
LIMCH1-214ENST00000512228 BRI3BPQ8WY22 251 aa13.93□□□□□ -0.18
LIMCH1-214ENST00000512228 FRAT1Q92837 279 aaPredicted RBP13.93□□□□□ -0.18
LIMCH1-214ENST00000512228 AK9Q5TCS8 1911 aa13.92□□□□□ -0.18
LIMCH1-214ENST00000512228 MYH2Q9UKX2 1941 aa13.92□□□□□ -0.18
LIMCH1-214ENST00000512228 UNCXA6NJT0 531 aa13.92□□□□□ -0.18
LIMCH1-214ENST00000512228 SRGAP3O43295 1099 aa13.92□□□□□ -0.18
LIMCH1-214ENST00000512228 INHBEP58166 350 aa13.92□□□□□ -0.18
LIMCH1-214ENST00000512228 TCP10Q12799 353 aa13.92□□□□□ -0.18
LIMCH1-214ENST00000512228 WDR66Q8TBY9 1149 aa13.92□□□□□ -0.18
LIMCH1-214ENST00000512228 ZNF384Q8TF68 577 aa13.92□□□□□ -0.18
LIMCH1-214ENST00000512228 FAM198AQ9UFP1 575 aa13.92□□□□□ -0.18
LIMCH1-214ENST00000512228 FBXO3Q9UK99 471 aa13.92□□□□□ -0.18
LIMCH1-214ENST00000512228 SUGT1Q9Y2Z0 365 aa13.92□□□□□ -0.18
LIMCH1-214ENST00000512228 SNCAIPQ9Y6H5 919 aa13.92□□□□□ -0.18
LIMCH1-214ENST00000512228 MTX1Q13505 466 aa13.91□□□□□ -0.18
LIMCH1-214ENST00000512228 ATF7IPQ6VMQ6 1270 aa13.91□□□□□ -0.18
LIMCH1-214ENST00000512228 TMEM57Q8N5G2 664 aa13.91□□□□□ -0.18
LIMCH1-214ENST00000512228 XAGE2Q96GT9 111 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms