RNA–Protein interactions for RNA: ENST00000475482.5

CPSF3-203, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 4

Gene CPSF3, Length 871 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-203ENST00000475482 DEFB129Q9H1M3 183 aa19.35■□□□□ 0.69
CPSF3-203ENST00000475482 TTF2Q9UNY4 1162 aaKnown RBP19.35■□□□□ 0.69
CPSF3-203ENST00000475482 IL15P40933 162 aaPredicted RBP19.34■□□□□ 0.69
CPSF3-203ENST00000475482 HDLBPQ00341 1268 aaKnown RBP19.34■□□□□ 0.69
CPSF3-203ENST00000475482 GRIK5Q16478 980 aa19.34■□□□□ 0.69
CPSF3-203ENST00000475482 BEGAINQ9BUH8 593 aa19.34■□□□□ 0.69
CPSF3-203ENST00000475482 MRIQ9BWK5 157 aa19.34■□□□□ 0.69
CPSF3-203ENST00000475482 IQSEC3Q9UPP2 1182 aaPredicted RBP19.34■□□□□ 0.69
CPSF3-203ENST00000475482 PA2G4Q9UQ80 394 aaKnown RBP19.34■□□□□ 0.69
CPSF3-203ENST00000475482 PPP2R3BQ9Y5P8 575 aa19.34■□□□□ 0.69
CPSF3-203ENST00000475482 SLC5A1P13866 664 aa19.33■□□□□ 0.68
CPSF3-203ENST00000475482 MOB2Q70IA6 237 aa19.33■□□□□ 0.68
CPSF3-203ENST00000475482 RASAL3Q86YV0 1011 aa19.33■□□□□ 0.68
CPSF3-203ENST00000475482 SIL1Q9H173 461 aa19.33■□□□□ 0.68
CPSF3-203ENST00000475482 CEP126Q9P2H0 1117 aa19.33■□□□□ 0.68
CPSF3-203ENST00000475482 SUGT1Q9Y2Z0 365 aa19.33■□□□□ 0.68
CPSF3-203ENST00000475482 AKAP11Q9UKA4 1901 aa19.32■□□□□ 0.68
CPSF3-203ENST00000475482 MYO1BO43795 1136 aa19.32■□□□□ 0.68
CPSF3-203ENST00000475482 KIF23Q02241 960 aaPredicted RBP19.32■□□□□ 0.68
CPSF3-203ENST00000475482 SPDYE2Q495Y8 402 aa19.32■□□□□ 0.68
CPSF3-203ENST00000475482 SSC5DA1L4H1 1573 aa19.32■□□□□ 0.68
CPSF3-203ENST00000475482 UBE2Q2LH0YL09 131 aa19.31■□□□□ 0.68
CPSF3-203ENST00000475482 NF2P35240 595 aa19.31■□□□□ 0.68
CPSF3-203ENST00000475482 CRKP46108 304 aa19.31■□□□□ 0.68
CPSF3-203ENST00000475482 MAP3K11Q16584 847 aa19.31■□□□□ 0.68
CPSF3-203ENST00000475482 LDLRAD1Q5T700 205 aa19.31■□□□□ 0.68
CPSF3-203ENST00000475482 CLRN2A0PK11 232 aa19.3■□□□□ 0.68
CPSF3-203ENST00000475482 SRGAP3O43295 1099 aa19.3■□□□□ 0.68
CPSF3-203ENST00000475482 GNAI2P04899 355 aa19.3■□□□□ 0.68
CPSF3-203ENST00000475482 CHAF1AQ13111 956 aaPredicted RBP19.3■□□□□ 0.68
CPSF3-203ENST00000475482 ATP2B3Q16720 1220 aa19.3■□□□□ 0.68
CPSF3-203ENST00000475482 CSRNP1Q96S65 589 aa19.3■□□□□ 0.68
CPSF3-203ENST00000475482 ZNF70Q9UC06 446 aaPredicted RBP19.3■□□□□ 0.68
CPSF3-203ENST00000475482 FRAT2O75474 233 aaPredicted RBP19.29■□□□□ 0.68
CPSF3-203ENST00000475482 RBM5P52756 815 aaKnown RBP eCLIP19.29■□□□□ 0.68
CPSF3-203ENST00000475482 REM2Q8IYK8 340 aaPredicted RBP19.29■□□□□ 0.68
CPSF3-203ENST00000475482 ZBTB40Q9NUA8 1239 aa19.29■□□□□ 0.68
CPSF3-203ENST00000475482 CASP8AP2Q9UKL3 1982 aa19.29■□□□□ 0.68
CPSF3-203ENST00000475482 ZBTB7BO15156 539 aaPredicted RBP19.28■□□□□ 0.68
CPSF3-203ENST00000475482 RASA3Q14644 834 aa19.28■□□□□ 0.68
CPSF3-203ENST00000475482 CENPQQ7L2Z9 268 aaPredicted RBP19.28■□□□□ 0.68
CPSF3-203ENST00000475482 ARMC9Q7Z3E5 817 aa19.28■□□□□ 0.68
CPSF3-203ENST00000475482 WDR66Q8TBY9 1149 aa19.28■□□□□ 0.68
CPSF3-203ENST00000475482 TDRD3Q9H7E2 651 aaKnown RBP19.28■□□□□ 0.68
CPSF3-203ENST00000475482 SAGE1Q9NXZ1 904 aa19.28■□□□□ 0.68
CPSF3-203ENST00000475482 LAMB1P07942 1786 aa19.27■□□□□ 0.68
CPSF3-203ENST00000475482 PNMA6EA0A0J9YXQ4 647 aa19.27■□□□□ 0.68
CPSF3-203ENST00000475482 SEMA3EO15041 775 aa19.27■□□□□ 0.68
CPSF3-203ENST00000475482 TNFAIP1Q13829 316 aa19.27■□□□□ 0.68
CPSF3-203ENST00000475482 HHIPL2Q6UWX4 724 aa19.27■□□□□ 0.68
CPSF3-203ENST00000475482 ZDHHC15Q96MV8 337 aa19.27■□□□□ 0.68
CPSF3-203ENST00000475482 TEPSINQ96N21 525 aa19.27■□□□□ 0.68
CPSF3-203ENST00000475482 RWDD1Q9H446 243 aaPredicted RBP19.27■□□□□ 0.68
CPSF3-203ENST00000475482 VEZTQ9HBM0 779 aa19.27■□□□□ 0.68
CPSF3-203ENST00000475482 TSKSQ9UJT2 592 aa19.27■□□□□ 0.68
CPSF3-203ENST00000475482 SALL1Q9NSC2 1324 aa19.26■□□□□ 0.67
CPSF3-203ENST00000475482 UNCXA6NJT0 531 aa19.26■□□□□ 0.67
CPSF3-203ENST00000475482 PHKA1P46020 1223 aa19.26■□□□□ 0.67
CPSF3-203ENST00000475482 TTLL12Q14166 644 aaPredicted RBP19.26■□□□□ 0.67
CPSF3-203ENST00000475482 SUPT20HL1Q3ZLR7 823 aa19.26■□□□□ 0.67
CPSF3-203ENST00000475482 NBPF12Q5TAG4 269 aaPredicted RBP19.26■□□□□ 0.67
CPSF3-203ENST00000475482 APOBEC3HQ6NTF7 200 aaKnown RBP19.26■□□□□ 0.67
CPSF3-203ENST00000475482 TEKT1Q969V4 418 aa19.26■□□□□ 0.67
CPSF3-203ENST00000475482 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.26■□□□□ 0.67
CPSF3-203ENST00000475482 MAST3O60307 1309 aa19.25■□□□□ 0.67
CPSF3-203ENST00000475482 ADORA1P30542 326 aa19.25■□□□□ 0.67
CPSF3-203ENST00000475482 POLA2Q14181 598 aa19.25■□□□□ 0.67
CPSF3-203ENST00000475482 CCDC102BQ68D86 513 aa19.25■□□□□ 0.67
CPSF3-203ENST00000475482 GNL3LQ9NVN8 582 aaKnown RBP19.25■□□□□ 0.67
CPSF3-203ENST00000475482 RNF186Q9NXI6 227 aa19.25■□□□□ 0.67
CPSF3-203ENST00000475482 ANGEL1Q9UNK9 670 aaKnown RBP19.25■□□□□ 0.67
CPSF3-203ENST00000475482 PPP1R12BO60237 982 aaPredicted RBP19.24■□□□□ 0.67
CPSF3-203ENST00000475482 TIMM10P62072 90 aa19.24■□□□□ 0.67
CPSF3-203ENST00000475482 TFCP2Q12800 502 aa19.24■□□□□ 0.67
CPSF3-203ENST00000475482 FKBP1CQ5VVH2 108 aa19.24■□□□□ 0.67
CPSF3-203ENST00000475482 DENND2AQ9ULE3 1009 aa19.24■□□□□ 0.67
CPSF3-203ENST00000475482 FZD1Q9UP38 647 aa19.24■□□□□ 0.67
CPSF3-203ENST00000475482 PDS5AQ29RF7 1337 aaKnown RBP19.24■□□□□ 0.67
CPSF3-203ENST00000475482 A0A1B0GUL7 405 aa19.23■□□□□ 0.67
CPSF3-203ENST00000475482 USP2O75604 605 aaPredicted RBP19.23■□□□□ 0.67
CPSF3-203ENST00000475482 TM4SF4P48230 202 aa19.23■□□□□ 0.67
CPSF3-203ENST00000475482 PRKG1Q13976 671 aa19.23■□□□□ 0.67
CPSF3-203ENST00000475482 SSH3Q8TE77 659 aa19.23■□□□□ 0.67
CPSF3-203ENST00000475482 AKAP2Q9Y2D5 859 aa19.23■□□□□ 0.67
CPSF3-203ENST00000475482 PRDX5P30044 214 aa19.22■□□□□ 0.67
CPSF3-203ENST00000475482 ATP8B2P98198 1209 aa19.22■□□□□ 0.67
CPSF3-203ENST00000475482 SPRYD7Q5W111 196 aa19.22■□□□□ 0.67
CPSF3-203ENST00000475482 XAGE2Q96GT9 111 aa19.22■□□□□ 0.67
CPSF3-203ENST00000475482 OTOFQ9HC10 1997 aa19.22■□□□□ 0.67
CPSF3-203ENST00000475482 TCP10L2B9ZVM9 353 aa19.21■□□□□ 0.67
CPSF3-203ENST00000475482 TRPA1O75762 1119 aa19.21■□□□□ 0.67
CPSF3-203ENST00000475482 HDAC1Q13547 482 aaPredicted RBP19.21■□□□□ 0.67
CPSF3-203ENST00000475482 FAM83AQ86UY5 434 aa19.21■□□□□ 0.67
CPSF3-203ENST00000475482 CDAN1Q8IWY9 1227 aa19.21■□□□□ 0.67
CPSF3-203ENST00000475482 TMEM39BQ9GZU3 492 aa19.21■□□□□ 0.67
CPSF3-203ENST00000475482 MYH2Q9UKX2 1941 aa19.2■□□□□ 0.66
CPSF3-203ENST00000475482 TNNI2P48788 182 aa19.2■□□□□ 0.66
CPSF3-203ENST00000475482 RASGRF1Q13972 1273 aa19.2■□□□□ 0.66
CPSF3-203ENST00000475482 CLMNQ96JQ2 1002 aa19.2■□□□□ 0.66
CPSF3-203ENST00000475482 DAGLAQ9Y4D2 1042 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms