RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 PEAR1Q5VY43 1037 aaPredicted RBP7□□□□□ -1.29
VPS13A-210ENST00000471439 HGSNATQ68CP4 663 aa7□□□□□ -1.29
VPS13A-210ENST00000471439 MEGF10Q96KG7 1140 aa7□□□□□ -1.29
VPS13A-210ENST00000471439 BRD1O95696 1058 aa6.99□□□□□ -1.29
VPS13A-210ENST00000471439 ORC1Q13415 861 aa6.99□□□□□ -1.29
VPS13A-210ENST00000471439 SSBP4Q9BWG4 385 aaPredicted RBP6.99□□□□□ -1.29
VPS13A-210ENST00000471439 SEMA6BQ9H3T3 888 aa6.99□□□□□ -1.29
VPS13A-210ENST00000471439 ERICH3Q5RHP9 1530 aa6.99□□□□□ -1.29
VPS13A-210ENST00000471439 AKNAQ7Z591 1439 aa6.99□□□□□ -1.29
VPS13A-210ENST00000471439 C3P01024 1663 aa6.98□□□□□ -1.29
VPS13A-210ENST00000471439 METTL12A8MUP2 240 aa6.98□□□□□ -1.29
VPS13A-210ENST00000471439 PDE2AO00408 941 aaPredicted RBP6.98□□□□□ -1.29
VPS13A-210ENST00000471439 GPR182O15218 404 aa6.98□□□□□ -1.29
VPS13A-210ENST00000471439 DDX3YO15523 660 aaKnown RBP6.98□□□□□ -1.29
VPS13A-210ENST00000471439 ADAM11O75078 769 aa6.98□□□□□ -1.29
VPS13A-210ENST00000471439 PTPRAP18433 802 aa6.98□□□□□ -1.29
VPS13A-210ENST00000471439 USP5P45974 858 aa6.98□□□□□ -1.29
VPS13A-210ENST00000471439 PDE4CQ08493 712 aa6.98□□□□□ -1.29
VPS13A-210ENST00000471439 UBASH3BQ8TF42 649 aa6.98□□□□□ -1.29
VPS13A-210ENST00000471439 WFDC12Q8WWY7 111 aa6.98□□□□□ -1.29
VPS13A-210ENST00000471439 OSMRQ99650 979 aa6.98□□□□□ -1.29
VPS13A-210ENST00000471439 BRPF3Q9ULD4 1205 aa6.98□□□□□ -1.29
VPS13A-210ENST00000471439 SOWAHDA6NJG2 315 aa6.97□□□□□ -1.29
VPS13A-210ENST00000471439 DYRK3O43781 588 aa6.97□□□□□ -1.29
VPS13A-210ENST00000471439 IGHA2P01877 340 aa6.97□□□□□ -1.29
VPS13A-210ENST00000471439 C1QTNF8P60827 252 aa6.97□□□□□ -1.29
VPS13A-210ENST00000471439 EHHADHQ08426 723 aa6.97□□□□□ -1.29
VPS13A-210ENST00000471439 IGF2-ASQ6U949 168 aa6.97□□□□□ -1.29
VPS13A-210ENST00000471439 FOXD4L4Q8WXT5 416 aaPredicted RBP6.97□□□□□ -1.29
VPS13A-210ENST00000471439 ADAM19Q9H013 955 aa6.97□□□□□ -1.29
VPS13A-210ENST00000471439 ZFYVE28Q9HCC9 887 aa6.97□□□□□ -1.29
VPS13A-210ENST00000471439 AMOTL2Q9Y2J4 779 aa6.97□□□□□ -1.29
VPS13A-210ENST00000471439 RICTORQ6R327 1708 aa6.96□□□□□ -1.29
VPS13A-210ENST00000471439 F8W735 103 aaPredicted RBP6.96□□□□□ -1.3
VPS13A-210ENST00000471439 FSCN2O14926 492 aa6.96□□□□□ -1.3
VPS13A-210ENST00000471439 RXRBP28702 533 aa6.96□□□□□ -1.3
VPS13A-210ENST00000471439 TP53INP1Q96A56 240 aa6.96□□□□□ -1.3
VPS13A-210ENST00000471439 FAM129BQ96TA1 746 aa6.96□□□□□ -1.3
VPS13A-210ENST00000471439 SOX13Q9UN79 622 aa6.96□□□□□ -1.3
VPS13A-210ENST00000471439 IVNS1ABPQ9Y6Y0 642 aa6.96□□□□□ -1.3
VPS13A-210ENST00000471439 SHANK2Q9UPX8 1470 aa6.96□□□□□ -1.3
VPS13A-210ENST00000471439 H3BRJ5 948 aa6.95□□□□□ -1.3
VPS13A-210ENST00000471439 KCNA1Q09470 495 aa6.95□□□□□ -1.3
VPS13A-210ENST00000471439 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.95□□□□□ -1.3
VPS13A-210ENST00000471439 TMEM102Q8N9M5 508 aaPredicted RBP6.95□□□□□ -1.3
VPS13A-210ENST00000471439 ASAP3Q8TDY4 903 aa6.95□□□□□ -1.3
VPS13A-210ENST00000471439 SLC7A3Q8WY07 619 aa6.95□□□□□ -1.3
VPS13A-210ENST00000471439 NXPE3Q969Y0 559 aa6.95□□□□□ -1.3
VPS13A-210ENST00000471439 KLHDC7BQ96G42 594 aa6.95□□□□□ -1.3
VPS13A-210ENST00000471439 AKTIPQ9H8T0 292 aa6.95□□□□□ -1.3
VPS13A-210ENST00000471439 PODXL2Q9NZ53 605 aa6.95□□□□□ -1.3
VPS13A-210ENST00000471439 CDK12Q9NYV4 1490 aaPredicted RBP6.95□□□□□ -1.3
VPS13A-210ENST00000471439 TRAPPC8Q9Y2L5 1435 aa6.94□□□□□ -1.3
VPS13A-210ENST00000471439 NEO1Q92859 1461 aa6.94□□□□□ -1.3
VPS13A-210ENST00000471439 SUPT6HQ7KZ85 1726 aaKnown RBP6.94□□□□□ -1.3
VPS13A-210ENST00000471439 ZBTB7CA1YPR0 619 aa6.94□□□□□ -1.3
VPS13A-210ENST00000471439 NDUFB5O43674 189 aa6.94□□□□□ -1.3
VPS13A-210ENST00000471439 CD68P34810 354 aaPredicted RBP6.94□□□□□ -1.3
VPS13A-210ENST00000471439 ZNF772Q68DY9 489 aaPredicted RBP6.94□□□□□ -1.3
VPS13A-210ENST00000471439 VN1R5Q7Z5H4 357 aa6.94□□□□□ -1.3
VPS13A-210ENST00000471439 CCER1Q8TC90 406 aaPredicted RBP6.94□□□□□ -1.3
VPS13A-210ENST00000471439 MRPL18Q9H0U6 180 aaKnown RBP6.94□□□□□ -1.3
VPS13A-210ENST00000471439 MUC3BQ9H195 1237 aa6.94□□□□□ -1.3
VPS13A-210ENST00000471439 CARMIL2Q6F5E8 1435 aa6.93□□□□□ -1.3
VPS13A-210ENST00000471439 TCOF1Q13428 1488 aaKnown RBP6.93□□□□□ -1.3
VPS13A-210ENST00000471439 ZFYVE16Q7Z3T8 1539 aa6.93□□□□□ -1.3
VPS13A-210ENST00000471439 A0A1W2PP55 124 aa6.93□□□□□ -1.3
VPS13A-210ENST00000471439 EDN3P14138 238 aa6.93□□□□□ -1.3
VPS13A-210ENST00000471439 NLRP12P59046 1061 aa6.93□□□□□ -1.3
VPS13A-210ENST00000471439 ACAD11Q709F0 780 aa6.93□□□□□ -1.3
VPS13A-210ENST00000471439 PMEPA1Q969W9 287 aa6.93□□□□□ -1.3
VPS13A-210ENST00000471439 NIF3L1Q9GZT8 377 aa6.93□□□□□ -1.3
VPS13A-210ENST00000471439 GZF1Q9H116 711 aaPredicted RBP6.93□□□□□ -1.3
VPS13A-210ENST00000471439 SRA1Q9HD15 236 aaKnown RBP6.93□□□□□ -1.3
VPS13A-210ENST00000471439 NPHS2Q9NP85 383 aa6.93□□□□□ -1.3
VPS13A-210ENST00000471439 BIN2Q9UBW5 565 aaPredicted RBP6.93□□□□□ -1.3
VPS13A-210ENST00000471439 GNEQ9Y223 722 aaKnown RBP6.93□□□□□ -1.3
VPS13A-210ENST00000471439 EP400Q96L91 3159 aa6.92□□□□□ -1.3
VPS13A-210ENST00000471439 GRIA4P48058 902 aa6.92□□□□□ -1.3
VPS13A-210ENST00000471439 KIAA1211Q6ZU35 1233 aa6.92□□□□□ -1.3
VPS13A-210ENST00000471439 MAP4K3Q8IVH8 894 aa6.92□□□□□ -1.3
VPS13A-210ENST00000471439 GALNT12Q8IXK2 581 aa6.92□□□□□ -1.3
VPS13A-210ENST00000471439 CACTIN-AS1Q8N1I8 211 aa6.92□□□□□ -1.3
VPS13A-210ENST00000471439 TMC1Q8TDI8 760 aa6.92□□□□□ -1.3
VPS13A-210ENST00000471439 BHLHE41Q9C0J9 482 aaPredicted RBP6.92□□□□□ -1.3
VPS13A-210ENST00000471439 SEC31BQ9NQW1 1179 aa6.92□□□□□ -1.3
VPS13A-210ENST00000471439 GLB1P16278 677 aa6.91□□□□□ -1.3
VPS13A-210ENST00000471439 SPRED3Q2MJR0 410 aa6.91□□□□□ -1.3
VPS13A-210ENST00000471439 PRSS36Q5K4E3 855 aa6.91□□□□□ -1.3
VPS13A-210ENST00000471439 Q6ZS46 218 aa6.91□□□□□ -1.3
VPS13A-210ENST00000471439 TMC7Q7Z402 723 aa6.91□□□□□ -1.3
VPS13A-210ENST00000471439 BSNDQ8WZ55 320 aa6.91□□□□□ -1.3
VPS13A-210ENST00000471439 UBL7Q96S82 380 aaPredicted RBP6.91□□□□□ -1.3
VPS13A-210ENST00000471439 TCF12Q99081 682 aa6.91□□□□□ -1.3
VPS13A-210ENST00000471439 PLA2R1Q13018 1463 aa6.91□□□□□ -1.3
VPS13A-210ENST00000471439 RAPGEF2Q9Y4G8 1499 aa6.91□□□□□ -1.3
VPS13A-210ENST00000471439 EFCAB5A4FU69 1503 aa6.91□□□□□ -1.3
VPS13A-210ENST00000471439 RNF17Q9BXT8 1623 aaKnown RBP6.9□□□□□ -1.3
VPS13A-210ENST00000471439 SOX1O00570 391 aaPredicted RBP6.9□□□□□ -1.3
VPS13A-210ENST00000471439 CABP4P57796 275 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms