RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 CCDC57Q2TAC2 916 aa14.37□□□□□ -0.11
USP54-209ENST00000464635 TAF7LQ5H9L4 462 aa14.37□□□□□ -0.11
USP54-209ENST00000464635 PRAMEF18Q5VWM3 479 aa14.37□□□□□ -0.11
USP54-209ENST00000464635 LDHAL6AQ6ZMR3 332 aa14.37□□□□□ -0.11
USP54-209ENST00000464635 C15orf52Q6ZUT6 534 aaKnown RBP14.37□□□□□ -0.11
USP54-209ENST00000464635 CERS5Q8N5B7 392 aa14.37□□□□□ -0.11
USP54-209ENST00000464635 C2orf69Q8N8R5 385 aa14.37□□□□□ -0.11
USP54-209ENST00000464635 IL27Q8NEV9 243 aa14.37□□□□□ -0.11
USP54-209ENST00000464635 CNNM1Q9NRU3 951 aa14.37□□□□□ -0.11
USP54-209ENST00000464635 WNT10BO00744 389 aa14.36□□□□□ -0.11
USP54-209ENST00000464635 ANP32AP39687 249 aaKnown RBP14.36□□□□□ -0.11
USP54-209ENST00000464635 RGMBQ6NW40 437 aa14.36□□□□□ -0.11
USP54-209ENST00000464635 MOB2Q70IA6 237 aa14.36□□□□□ -0.11
USP54-209ENST00000464635 BEGAINQ9BUH8 593 aa14.36□□□□□ -0.11
USP54-209ENST00000464635 JAG2Q9Y219 1238 aa14.36□□□□□ -0.11
USP54-209ENST00000464635 MYH13Q9UKX3 1938 aa14.35□□□□□ -0.11
USP54-209ENST00000464635 ERC2O15083 957 aa14.35□□□□□ -0.11
USP54-209ENST00000464635 CDC45O75419 566 aa14.35□□□□□ -0.11
USP54-209ENST00000464635 NOGQ13253 232 aa14.35□□□□□ -0.11
USP54-209ENST00000464635 OGFOD1Q8N543 542 aa14.35□□□□□ -0.11
USP54-209ENST00000464635 GPATCH3Q96I76 525 aa14.35□□□□□ -0.11
USP54-209ENST00000464635 ZBED3Q96IU2 234 aaPredicted RBP14.35□□□□□ -0.11
USP54-209ENST00000464635 PCDHAC2Q9Y5I4 1007 aa14.35□□□□□ -0.11
USP54-209ENST00000464635 SMARCA5O60264 1052 aaPredicted RBP14.34□□□□□ -0.11
USP54-209ENST00000464635 GLRX3O76003 335 aaKnown RBP14.34□□□□□ -0.11
USP54-209ENST00000464635 IL1R1P14778 569 aa14.34□□□□□ -0.11
USP54-209ENST00000464635 GSPT1P15170 499 aaKnown RBP14.34□□□□□ -0.11
USP54-209ENST00000464635 IL15P40933 162 aaPredicted RBP14.34□□□□□ -0.11
USP54-209ENST00000464635 ZNF157P51786 506 aaPredicted RBP14.34□□□□□ -0.11
USP54-209ENST00000464635 CASC1Q6TDU7 716 aa14.34□□□□□ -0.11
USP54-209ENST00000464635 ZNF804AQ7Z570 1209 aa14.34□□□□□ -0.11
USP54-209ENST00000464635 DDRGK1Q96HY6 314 aa14.34□□□□□ -0.11
USP54-209ENST00000464635 F8W031 263 aaPredicted RBP14.33□□□□□ -0.12
USP54-209ENST00000464635 SLC10A3P09131 477 aa14.33□□□□□ -0.12
USP54-209ENST00000464635 OS9Q13438 667 aaPredicted RBP14.33□□□□□ -0.12
USP54-209ENST00000464635 RASAL3Q86YV0 1011 aa14.33□□□□□ -0.12
USP54-209ENST00000464635 KLHDC4Q8TBB5 520 aa14.33□□□□□ -0.12
USP54-209ENST00000464635 HDAC9Q9UKV0 1011 aa14.33□□□□□ -0.12
USP54-209ENST00000464635 RIPOR2Q9Y4F9 1068 aa14.33□□□□□ -0.12
USP54-209ENST00000464635 GYG1P46976 350 aa14.32□□□□□ -0.12
USP54-209ENST00000464635 KIF23Q02241 960 aaPredicted RBP14.32□□□□□ -0.12
USP54-209ENST00000464635 LRRC24Q50LG9 513 aa14.32□□□□□ -0.12
USP54-209ENST00000464635 OTOFQ9HC10 1997 aa14.32□□□□□ -0.12
USP54-209ENST00000464635 SSC5DA1L4H1 1573 aa14.31□□□□□ -0.12
USP54-209ENST00000464635 UBE2Q2LH0YL09 131 aa14.31□□□□□ -0.12
USP54-209ENST00000464635 EYA2O00167 538 aa14.31□□□□□ -0.12
USP54-209ENST00000464635 IFIT2P09913 472 aaKnown RBP14.31□□□□□ -0.12
USP54-209ENST00000464635 SDSP20132 328 aa14.31□□□□□ -0.12
USP54-209ENST00000464635 UBE4AQ14139 1066 aa14.31□□□□□ -0.12
USP54-209ENST00000464635 CCDC102AQ96A19 550 aa14.31□□□□□ -0.12
USP54-209ENST00000464635 TBC1D32Q96NH3 1257 aa14.31□□□□□ -0.12
USP54-209ENST00000464635 ECHDC1Q9NTX5 307 aa14.31□□□□□ -0.12
USP54-209ENST00000464635 CA12O43570 354 aa14.3□□□□□ -0.12
USP54-209ENST00000464635 RBM25P49756 843 aaKnown RBP14.3□□□□□ -0.12
USP54-209ENST00000464635 TBC1D9Q6ZT07 1266 aa14.3□□□□□ -0.12
USP54-209ENST00000464635 VGLL2Q8N8G2 317 aa14.3□□□□□ -0.12
USP54-209ENST00000464635 TDRD7Q8NHU6 1098 aaKnown RBP14.3□□□□□ -0.12
USP54-209ENST00000464635 PI4K2BQ8TCG2 481 aa14.3□□□□□ -0.12
USP54-209ENST00000464635 OTUD7AQ8TE49 926 aaPredicted RBP14.3□□□□□ -0.12
USP54-209ENST00000464635 FAM84BQ96KN1 310 aaPredicted RBP14.3□□□□□ -0.12
USP54-209ENST00000464635 IPO9Q96P70 1041 aaKnown RBP14.3□□□□□ -0.12
USP54-209ENST00000464635 FZD1Q9UP38 647 aa14.3□□□□□ -0.12
USP54-209ENST00000464635 PA2G4Q9UQ80 394 aaKnown RBP14.3□□□□□ -0.12
USP54-209ENST00000464635 FAM205AQ6ZU69 1335 aa14.3□□□□□ -0.12
USP54-209ENST00000464635 LAMB1P07942 1786 aa14.29□□□□□ -0.12
USP54-209ENST00000464635 CLRN2A0PK11 232 aa14.29□□□□□ -0.12
USP54-209ENST00000464635 APBB1O00213 710 aa14.29□□□□□ -0.12
USP54-209ENST00000464635 FKBP1AP62942 108 aaKnown RBP14.29□□□□□ -0.12
USP54-209ENST00000464635 FKBP1BP68106 108 aa14.29□□□□□ -0.12
USP54-209ENST00000464635 TTLL12Q14166 644 aaPredicted RBP14.29□□□□□ -0.12
USP54-209ENST00000464635 DLGAP5Q15398 846 aa14.29□□□□□ -0.12
USP54-209ENST00000464635 CFAP100Q494V2 611 aa14.29□□□□□ -0.12
USP54-209ENST00000464635 METTL24Q5JXM2 366 aa14.29□□□□□ -0.12
USP54-209ENST00000464635 ATG9AQ7Z3C6 839 aa14.29□□□□□ -0.12
USP54-209ENST00000464635 APOBEC3FQ8IUX4 373 aaKnown RBP14.29□□□□□ -0.12
USP54-209ENST00000464635 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.29□□□□□ -0.12
USP54-209ENST00000464635 ABHD8Q96I13 439 aa14.29□□□□□ -0.12
USP54-209ENST00000464635 IL1RAPL2Q9NP60 686 aa14.29□□□□□ -0.12
USP54-209ENST00000464635 IQSEC3Q9UPP2 1182 aaPredicted RBP14.29□□□□□ -0.12
USP54-209ENST00000464635 AKAP2Q9Y2D5 859 aa14.29□□□□□ -0.12
USP54-209ENST00000464635 MROH5Q6ZUA9 1318 aa14.29□□□□□ -0.12
USP54-209ENST00000464635 COL1A1P02452 1464 aaPredicted RBP14.29□□□□□ -0.12
USP54-209ENST00000464635 SPDYE2BA6NHP3 402 aa14.28□□□□□ -0.12
USP54-209ENST00000464635 REC8O95072 547 aa14.28□□□□□ -0.12
USP54-209ENST00000464635 SEC24BO95487 1268 aa14.28□□□□□ -0.12
USP54-209ENST00000464635 SPDYE6P0CI01 402 aa14.28□□□□□ -0.12
USP54-209ENST00000464635 HIBADHP31937 336 aaKnown RBP14.28□□□□□ -0.12
USP54-209ENST00000464635 MMP14P50281 582 aa14.28□□□□□ -0.12
USP54-209ENST00000464635 PRKG1Q13976 671 aa14.28□□□□□ -0.12
USP54-209ENST00000464635 GRIK5Q16478 980 aa14.28□□□□□ -0.12
USP54-209ENST00000464635 MTMR14Q8NCE2 650 aa14.28□□□□□ -0.12
USP54-209ENST00000464635 EAF2Q96CJ1 260 aaPredicted RBP14.28□□□□□ -0.12
USP54-209ENST00000464635 PRMT6Q96LA8 375 aaPredicted RBP14.28□□□□□ -0.12
USP54-209ENST00000464635 CSRNP1Q96S65 589 aa14.28□□□□□ -0.12
USP54-209ENST00000464635 HIP1O00291 1037 aa14.27□□□□□ -0.13
USP54-209ENST00000464635 ATP5JP18859 108 aa14.27□□□□□ -0.13
USP54-209ENST00000464635 TNNI3KQ59H18 835 aa14.27□□□□□ -0.13
USP54-209ENST00000464635 MFSD14BQ5SR56 506 aa14.27□□□□□ -0.13
USP54-209ENST00000464635 RNF186Q9NXI6 227 aa14.27□□□□□ -0.13
USP54-209ENST00000464635 FPGT-TNNI3KV9GXZ4 949 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms