RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 PCGF5Q86SE9 256 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 ENAHQ8N8S7 591 aaPredicted RBP2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 OR6P1Q8NGX9 317 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 WDR66Q8TBY9 1149 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 THAP11Q96EK4 314 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 KRTAP4-6Q9BYQ5 205 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 LDHAL6BQ9BYZ2 381 aaPredicted RBP2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 FBRSQ9HAH7 460 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 SLC5A4Q9NY91 659 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 HPS5Q9UPZ3 1129 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 A0A0G2JS52 829 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 GNRH1P01148 92 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 VARSP26640 1264 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 ERVK-9P63128 1117 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 PIN1Q13526 163 aaPredicted RBP2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 CAMK2GQ13555 558 aaPredicted RBP2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 TM4SF20Q53R12 229 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 TMEM67Q5HYA8 995 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 SH3PXD2AQ5TCZ1 1133 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 IL31Q6EBC2 164 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 IFNL3Q8IZI9 196 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 AIDAQ96BJ3 306 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 HOOK2Q96ED9 719 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 SLC26A8Q96RN1 970 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 YIPF4Q9BSR8 244 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 INO80BQ9C086 356 aaPredicted RBP2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 ELP3Q9H9T3 547 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 TMPRSS4Q9NRS4 437 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 RCAN3Q9UKA8 241 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 RPS6KL1Q9Y6S9 549 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 E2F8A0AVK6 867 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 AGRPO00253 132 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 EXOC5O00471 708 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 MICAL2O94851 1124 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 LIG3P49916 1009 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 MMP16P51512 607 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 GRM2Q14416 872 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 MAPRE1Q15691 268 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 THNSL2Q86YJ6 484 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 C1orf131Q8NDD1 294 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 RHPN1Q8TCX5 695 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 SLC4A9Q96Q91 983 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 CHST12Q9NRB3 414 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 TCEA3O75764 348 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 COPB2P35606 906 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 NEK3P51956 506 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 PABPC4Q13310 644 aaKnown RBP eCLIP2.88□□□□□ -1.956e-6■■■■■ 28.1
CCDC88A-208ENST00000444458 BIRC3Q13489 604 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 ALFQ53S48 1182 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 C6orf15Q6UXA7 325 aaPredicted RBP2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 CCDC89Q8N998 374 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 ANKK1Q8NFD2 765 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 SVIPQ8NHG7 77 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 SLC7A3Q8WY07 619 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 TAGLN3Q9UI15 199 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 ZMYM5Q9UJ78 669 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 GTF2A1LQ9UNN4 478 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 FAM50BQ9Y247 325 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 IQCA1LA6NCM1 817 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 VSTM5A8MXK1 200 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 B2RBV5 119 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 EML1O00423 815 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 IMPDH2P12268 514 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 CES1P23141 567 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 TCIRG1Q13488 830 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 INO80DQ53TQ3 878 aaPredicted RBP2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 NBPF10Q6P3W6 841 aaKnown RBP2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 C1orf228Q6PIY5 440 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 EEPD1Q7L9B9 569 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 DRC7Q8IY82 874 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 FAM160A2Q8N612 972 aaPredicted RBP2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 TNIP3Q96KP6 325 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 NEUROD6Q96NK8 337 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 CEP44Q9C0F1 390 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 LUC7LQ9NQ29 371 aaKnown RBP2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 CASS4Q9NQ75 786 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 IP6K2Q9UHH9 426 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 TPX2Q9ULW0 747 aaKnown RBP2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 RABGAP1Q9Y3P9 1069 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 CCDC163A0A0D9SF12 145 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 NEK4P51957 841 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 FOXK2Q01167 660 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 POU5F1Q01860 360 aaKnown RBP2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 C4orf48Q5BLP8 95 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 PDE12Q6L8Q7 609 aaKnown RBP2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 TMEM214Q6NUQ4 689 aaKnown RBP2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 BICDL1Q6ZP65 573 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 PHC3Q8NDX5 983 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 ACRBPQ8NEB7 543 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 CNKSR1Q969H4 720 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 ZNF700Q9H0M5 742 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 PTPRHQ9HD43 1115 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 PRDM11Q9NQV5 511 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 PPM1HQ9ULR3 514 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 USP20Q9Y2K6 914 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 MAP4K5Q9Y4K4 846 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 ERCC6L2Q5T890 1561 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 CDK2AP1O14519 115 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 KCNQ2O43526 872 aa2.88□□□□□ -1.95
CCDC88A-208ENST00000444458 FGAP02671 866 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms