RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 ARMC5Q96C12 935 aa17.83■□□□□ 0.44
PTCH1-202ENST00000375271 HOOK2Q96ED9 719 aa17.83■□□□□ 0.44
PTCH1-202ENST00000375271 RBBP6Q7Z6E9 1792 aaKnown RBP17.83■□□□□ 0.44
PTCH1-202ENST00000375271 CRKP46108 304 aa17.82■□□□□ 0.44
PTCH1-202ENST00000375271 MAP3K9P80192 1104 aa17.82■□□□□ 0.44
PTCH1-202ENST00000375271 EXOSC9Q06265 439 aaKnown RBP17.82■□□□□ 0.44
PTCH1-202ENST00000375271 CHAF1AQ13111 956 aaPredicted RBP17.82■□□□□ 0.44
PTCH1-202ENST00000375271 CAVIN4Q5BKX8 364 aa17.82■□□□□ 0.44
PTCH1-202ENST00000375271 TBC1D22AQ8WUA7 517 aa17.82■□□□□ 0.44
PTCH1-202ENST00000375271 OTOFQ9HC10 1997 aa17.82■□□□□ 0.44
PTCH1-202ENST00000375271 MROH5Q6ZUA9 1318 aa17.81■□□□□ 0.44
PTCH1-202ENST00000375271 TESPA1A2RU30 521 aaPredicted RBP17.81■□□□□ 0.44
PTCH1-202ENST00000375271 VAMP4O75379 141 aa17.81■□□□□ 0.44
PTCH1-202ENST00000375271 EN2P19622 333 aaPredicted RBP17.81■□□□□ 0.44
PTCH1-202ENST00000375271 VGLL4Q14135 290 aa17.81■□□□□ 0.44
PTCH1-202ENST00000375271 TDRD7Q8NHU6 1098 aaKnown RBP17.81■□□□□ 0.44
PTCH1-202ENST00000375271 PTPN18Q99952 460 aa17.81■□□□□ 0.44
PTCH1-202ENST00000375271 SRCIN1Q9C0H9 1055 aa17.81■□□□□ 0.44
PTCH1-202ENST00000375271 TMEM39BQ9GZU3 492 aa17.81■□□□□ 0.44
PTCH1-202ENST00000375271 ARAP2Q8WZ64 1704 aa17.81■□□□□ 0.44
PTCH1-202ENST00000375271 ALDH1L1O75891 902 aa17.8■□□□□ 0.44
PTCH1-202ENST00000375271 NCBP3Q53F19 620 aaKnown RBP17.8■□□□□ 0.44
PTCH1-202ENST00000375271 WDR63Q8IWG1 891 aa17.8■□□□□ 0.44
PTCH1-202ENST00000375271 TEKT1Q969V4 418 aa17.8■□□□□ 0.44
PTCH1-202ENST00000375271 MRS2Q9HD23 443 aa17.8■□□□□ 0.44
PTCH1-202ENST00000375271 CENPFP49454 3210 aa17.8■□□□□ 0.44
PTCH1-202ENST00000375271 HTTP42858 3142 aa17.8■□□□□ 0.44
PTCH1-202ENST00000375271 MAST3O60307 1309 aa17.79■□□□□ 0.44
PTCH1-202ENST00000375271 AOX1Q06278 1338 aa17.79■□□□□ 0.44
PTCH1-202ENST00000375271 MYCP01106 439 aaPredicted RBP17.79■□□□□ 0.44
PTCH1-202ENST00000375271 CETPP11597 493 aa17.79■□□□□ 0.44
PTCH1-202ENST00000375271 METTL24Q5JXM2 366 aa17.79■□□□□ 0.44
PTCH1-202ENST00000375271 BRI3BPQ8WY22 251 aa17.79■□□□□ 0.44
PTCH1-202ENST00000375271 PTCH2Q9Y6C5 1203 aa17.79■□□□□ 0.44
PTCH1-202ENST00000375271 KIAA0100Q14667 2235 aaKnown RBP17.78■□□□□ 0.44
PTCH1-202ENST00000375271 ZEB1P37275 1124 aaPredicted RBP17.78■□□□□ 0.44
PTCH1-202ENST00000375271 EPHA10Q5JZY3 1008 aa17.78■□□□□ 0.44
PTCH1-202ENST00000375271 DCAF15Q66K64 600 aa17.78■□□□□ 0.44
PTCH1-202ENST00000375271 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.78■□□□□ 0.44
PTCH1-202ENST00000375271 ZNF333Q96JL9 665 aa17.78■□□□□ 0.44
PTCH1-202ENST00000375271 WRNIP1Q96S55 665 aa17.78■□□□□ 0.44
PTCH1-202ENST00000375271 IQSEC3Q9UPP2 1182 aaPredicted RBP17.78■□□□□ 0.44
PTCH1-202ENST00000375271 MKI67P46013 3256 aaKnown RBP17.78■□□□□ 0.44
PTCH1-202ENST00000375271 SNAPC2Q13487 334 aa17.77■□□□□ 0.44
PTCH1-202ENST00000375271 ERO1BQ86YB8 467 aa17.77■□□□□ 0.44
PTCH1-202ENST00000375271 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.77■□□□□ 0.44
PTCH1-202ENST00000375271 CNKSR2Q8WXI2 1034 aa17.77■□□□□ 0.44
PTCH1-202ENST00000375271 MS4A4AQ96JQ5 239 aa17.77■□□□□ 0.44
PTCH1-202ENST00000375271 FAM84BQ96KN1 310 aaPredicted RBP17.77■□□□□ 0.44
PTCH1-202ENST00000375271 SPDYE5A6NIY4 337 aa17.76■□□□□ 0.43
PTCH1-202ENST00000375271 HDLBPQ00341 1268 aaKnown RBP17.76■□□□□ 0.43
PTCH1-202ENST00000375271 TEPSINQ96N21 525 aa17.76■□□□□ 0.43
PTCH1-202ENST00000375271 GNRH1P01148 92 aa17.75■□□□□ 0.43
PTCH1-202ENST00000375271 CACNB3P54284 484 aa17.75■□□□□ 0.43
PTCH1-202ENST00000375271 CCDC184Q52MB2 194 aa17.75■□□□□ 0.43
PTCH1-202ENST00000375271 FAM43AQ8N2R8 423 aa17.75■□□□□ 0.43
PTCH1-202ENST00000375271 ZCCHC17Q9NP64 241 aaKnown RBP17.75■□□□□ 0.43
PTCH1-202ENST00000375271 TLR2O60603 784 aa17.74■□□□□ 0.43
PTCH1-202ENST00000375271 IFIT1P09914 478 aaKnown RBP17.74■□□□□ 0.43
PTCH1-202ENST00000375271 PRMT2P55345 433 aa17.74■□□□□ 0.43
PTCH1-202ENST00000375271 CDAN1Q8IWY9 1227 aa17.74■□□□□ 0.43
PTCH1-202ENST00000375271 SUCLG2Q96I99 432 aa17.74■□□□□ 0.43
PTCH1-202ENST00000375271 PUS3Q9BZE2 481 aaKnown RBP17.74■□□□□ 0.43
PTCH1-202ENST00000375271 ANP32CO43423 234 aa17.73■□□□□ 0.43
PTCH1-202ENST00000375271 ECM2O94769 699 aaPredicted RBP17.73■□□□□ 0.43
PTCH1-202ENST00000375271 HOXD10P28358 340 aa17.73■□□□□ 0.43
PTCH1-202ENST00000375271 LACTBP83111 547 aaPredicted RBP17.73■□□□□ 0.43
PTCH1-202ENST00000375271 PPIL2Q13356 520 aa17.73■□□□□ 0.43
PTCH1-202ENST00000375271 FAM83AQ86UY5 434 aa17.73■□□□□ 0.43
PTCH1-202ENST00000375271 SH3TC2Q8TF17 1288 aa17.73■□□□□ 0.43
PTCH1-202ENST00000375271 ZNF341Q9BYN7 854 aa17.73■□□□□ 0.43
PTCH1-202ENST00000375271 RAET1EQ8TD07 263 aa17.72■□□□□ 0.43
PTCH1-202ENST00000375271 ZKSCAN4Q969J2 545 aaPredicted RBP17.72■□□□□ 0.43
PTCH1-202ENST00000375271 ZDHHC15Q96MV8 337 aa17.72■□□□□ 0.43
PTCH1-202ENST00000375271 SUGT1Q9Y2Z0 365 aa17.72■□□□□ 0.43
PTCH1-202ENST00000375271 SNCAIPQ9Y6H5 919 aa17.72■□□□□ 0.43
PTCH1-202ENST00000375271 BRCA2P51587 3418 aa17.72■□□□□ 0.43
PTCH1-202ENST00000375271 BTBD19C9JJ37 291 aa17.71■□□□□ 0.43
PTCH1-202ENST00000375271 FKBP1CQ5VVH2 108 aa17.71■□□□□ 0.43
PTCH1-202ENST00000375271 FBXO33Q7Z6M2 555 aa17.71■□□□□ 0.43
PTCH1-202ENST00000375271 BICC1Q9H694 974 aaKnown RBP17.71■□□□□ 0.43
PTCH1-202ENST00000375271 BIN2Q9UBW5 565 aaPredicted RBP17.71■□□□□ 0.43
PTCH1-202ENST00000375271 RIPOR2Q9Y4F9 1068 aa17.71■□□□□ 0.43
PTCH1-202ENST00000375271 IRF6O14896 467 aa17.7■□□□□ 0.42
PTCH1-202ENST00000375271 PDE8BO95263 885 aa17.7■□□□□ 0.42
PTCH1-202ENST00000375271 FMNL1O95466 1100 aaPredicted RBP17.7■□□□□ 0.42
PTCH1-202ENST00000375271 PPATQ06203 517 aa17.7■□□□□ 0.42
PTCH1-202ENST00000375271 PUM3Q15397 648 aaKnown RBP17.7■□□□□ 0.42
PTCH1-202ENST00000375271 NKX2-3Q8TAU0 364 aa17.7■□□□□ 0.42
PTCH1-202ENST00000375271 DPF3Q92784 378 aa17.7■□□□□ 0.42
PTCH1-202ENST00000375271 AK9Q5TCS8 1911 aa17.7■□□□□ 0.42
PTCH1-202ENST00000375271 RPAP1Q9BWH6 1393 aaPredicted RBP17.69■□□□□ 0.42
PTCH1-202ENST00000375271 NBPF7P0C2Y1 421 aaPredicted RBP17.69■□□□□ 0.42
PTCH1-202ENST00000375271 SLC5A1P13866 664 aa17.69■□□□□ 0.42
PTCH1-202ENST00000375271 LRRC24Q50LG9 513 aa17.69■□□□□ 0.42
PTCH1-202ENST00000375271 MIGA2Q7L4E1 593 aa17.69■□□□□ 0.42
PTCH1-202ENST00000375271 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.69■□□□□ 0.42
PTCH1-202ENST00000375271 ARHGAP39Q9C0H5 1083 aa17.69■□□□□ 0.42
PTCH1-202ENST00000375271 COLQQ9Y215 455 aaPredicted RBP17.69■□□□□ 0.42
PTCH1-202ENST00000375271 PSMC4P43686 418 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms