RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 NAPBQ9H115 298 aa19.38■□□□□ 0.69
VPS54-201ENST00000272322 ZNF274Q96GC6 653 aaPredicted RBP19.38■□□□□ 0.69
VPS54-201ENST00000272322 LLPHQ9BRT6 129 aaKnown RBP19.38■□□□□ 0.69
VPS54-201ENST00000272322 SLC26A6Q9BXS9 759 aa19.38■□□□□ 0.69
VPS54-201ENST00000272322 IFIT3O14879 490 aaKnown RBP19.37■□□□□ 0.69
VPS54-201ENST00000272322 PRDM1O75626 825 aa19.37■□□□□ 0.69
VPS54-201ENST00000272322 TDO2P48775 406 aa19.37■□□□□ 0.69
VPS54-201ENST00000272322 LRRFIP1Q32MZ4 808 aaKnown RBP19.37■□□□□ 0.69
VPS54-201ENST00000272322 TMEM67Q5HYA8 995 aa19.37■□□□□ 0.69
VPS54-201ENST00000272322 NAA16Q6N069 864 aaPredicted RBP19.37■□□□□ 0.69
VPS54-201ENST00000272322 MB21D2Q8IYB1 491 aaPredicted RBP19.37■□□□□ 0.69
VPS54-201ENST00000272322 NBPF3Q9H094 633 aa19.37■□□□□ 0.69
VPS54-201ENST00000272322 LRP2BPQ9P2M1 347 aa19.37■□□□□ 0.69
VPS54-201ENST00000272322 ADAMTSL3P82987 1691 aa19.37■□□□□ 0.69
VPS54-201ENST00000272322 CSF1RP07333 972 aa19.37■□□□□ 0.69
VPS54-201ENST00000272322 ADD2P35612 726 aa19.37■□□□□ 0.69
VPS54-201ENST00000272322 RASGRF1Q13972 1273 aa19.37■□□□□ 0.69
VPS54-201ENST00000272322 NAA30Q147X3 362 aaPredicted RBP19.37■□□□□ 0.69
VPS54-201ENST00000272322 SDR42E1Q8WUS8 393 aa19.37■□□□□ 0.69
VPS54-201ENST00000272322 NIP7Q9Y221 180 aaKnown RBP eCLIP19.37■□□□□ 0.69
VPS54-201ENST00000272322 JCADQ9P266 1359 aa19.37■□□□□ 0.69
VPS54-201ENST00000272322 N4BP2Q86UW6 1770 aaPredicted RBP19.37■□□□□ 0.69
VPS54-201ENST00000272322 NEDD4P46934 1319 aa19.37■□□□□ 0.69
VPS54-201ENST00000272322 SMC2O95347 1197 aa19.37■□□□□ 0.69
VPS54-201ENST00000272322 DPCR1Q3MIW9 517 aa19.37■□□□□ 0.69
VPS54-201ENST00000272322 KCNJ14Q9UNX9 436 aa19.37■□□□□ 0.69
VPS54-201ENST00000272322 MTMR7Q9Y216 660 aa19.37■□□□□ 0.69
VPS54-201ENST00000272322 KCNQ2O43526 872 aa19.36■□□□□ 0.69
VPS54-201ENST00000272322 GTF2E1P29083 439 aaPredicted RBP19.36■□□□□ 0.69
VPS54-201ENST00000272322 FBXO18Q8NFZ0 1043 aa19.36■□□□□ 0.69
VPS54-201ENST00000272322 PRDM10Q9NQV6 1147 aa19.36■□□□□ 0.69
VPS54-201ENST00000272322 SPTLC2O15270 562 aa19.36■□□□□ 0.69
VPS54-201ENST00000272322 PDILTQ8N807 584 aa19.35■□□□□ 0.69
VPS54-201ENST00000272322 MRPS27Q92552 414 aaKnown RBP19.35■□□□□ 0.69
VPS54-201ENST00000272322 ZFYP08048 801 aaPredicted RBP19.35■□□□□ 0.69
VPS54-201ENST00000272322 FAM160A1Q05DH4 1040 aa19.35■□□□□ 0.69
VPS54-201ENST00000272322 TPD52L1Q16890 204 aaPredicted RBP19.35■□□□□ 0.69
VPS54-201ENST00000272322 MYSM1Q5VVJ2 828 aa19.35■□□□□ 0.69
VPS54-201ENST00000272322 NOL12Q9UGY1 213 aaKnown RBP eCLIP19.35■□□□□ 0.69
VPS54-201ENST00000272322 V9GYY5 206 aaPredicted RBP19.35■□□□□ 0.69
VPS54-201ENST00000272322 SIPA1L3O60292 1781 aaPredicted RBP19.35■□□□□ 0.69
VPS54-201ENST00000272322 CYP2D7A0A087X1C5 515 aa19.35■□□□□ 0.69
VPS54-201ENST00000272322 LMOD1P29536 600 aaPredicted RBP19.35■□□□□ 0.69
VPS54-201ENST00000272322 ALS2Q96Q42 1657 aa19.34■□□□□ 0.69
VPS54-201ENST00000272322 RIOK3O14730 519 aaKnown RBP19.34■□□□□ 0.69
VPS54-201ENST00000272322 PDE8AO60658 829 aa19.34■□□□□ 0.69
VPS54-201ENST00000272322 PIP4K2BP78356 416 aa19.34■□□□□ 0.69
VPS54-201ENST00000272322 BAZ2BQ9UIF8 2168 aaKnown RBP19.34■□□□□ 0.69
VPS54-201ENST00000272322 GOLGA8AA7E2F4 631 aa19.34■□□□□ 0.69
VPS54-201ENST00000272322 GYG1P46976 350 aa19.34■□□□□ 0.69
VPS54-201ENST00000272322 ZSCAN25Q6NSZ9 544 aa19.34■□□□□ 0.69
VPS54-201ENST00000272322 SPATA5Q8NB90 893 aa19.34■□□□□ 0.69
VPS54-201ENST00000272322 LINC00301Q8NCQ3 95 aa19.34■□□□□ 0.69
VPS54-201ENST00000272322 ZSWIM5Q9P217 1185 aa19.34■□□□□ 0.69
VPS54-201ENST00000272322 ANGEL1Q9UNK9 670 aaKnown RBP19.34■□□□□ 0.69
VPS54-201ENST00000272322 DHX16O60231 1041 aaKnown RBP19.34■□□□□ 0.69
VPS54-201ENST00000272322 GUCY1A2P33402 732 aa19.34■□□□□ 0.69
VPS54-201ENST00000272322 TEX13AQ9BXU3 409 aaPredicted RBP19.34■□□□□ 0.69
VPS54-201ENST00000272322 USP27XA6NNY8 438 aa19.33■□□□□ 0.69
VPS54-201ENST00000272322 STX1AQ16623 288 aa19.33■□□□□ 0.69
VPS54-201ENST00000272322 RAI14Q9P0K7 980 aa19.33■□□□□ 0.69
VPS54-201ENST00000272322 STRCP1A6NGW2 1772 aa19.33■□□□□ 0.68
VPS54-201ENST00000272322 WDHD1O75717 1129 aaPredicted RBP19.33■□□□□ 0.68
VPS54-201ENST00000272322 KRT40Q6A162 431 aa19.33■□□□□ 0.68
VPS54-201ENST00000272322 VPS37DQ86XT2 251 aa19.33■□□□□ 0.68
VPS54-201ENST00000272322 SLC4A4Q9Y6R1 1079 aa19.33■□□□□ 0.68
VPS54-201ENST00000272322 PHRF1Q9P1Y6 1649 aaKnown RBP19.33■□□□□ 0.68
VPS54-201ENST00000272322 CRYBG1Q9Y4K1 1723 aa19.33■□□□□ 0.68
VPS54-201ENST00000272322 ZBTB43O43298 467 aa19.33■□□□□ 0.68
VPS54-201ENST00000272322 CHAF1AQ13111 956 aaPredicted RBP19.33■□□□□ 0.68
VPS54-201ENST00000272322 LCORLQ8N3X6 602 aa19.33■□□□□ 0.68
VPS54-201ENST00000272322 GOLGA8FQ08AF8 430 aa19.32■□□□□ 0.68
VPS54-201ENST00000272322 GOLGA8DPQ0D2H9 430 aa19.32■□□□□ 0.68
VPS54-201ENST00000272322 ARFGEF2Q9Y6D5 1785 aa19.32■□□□□ 0.68
VPS54-201ENST00000272322 ZNF202O95125 648 aa19.32■□□□□ 0.68
VPS54-201ENST00000272322 APOA5Q6Q788 366 aa19.32■□□□□ 0.68
VPS54-201ENST00000272322 AGXT2Q9BYV1 514 aa19.32■□□□□ 0.68
VPS54-201ENST00000272322 ZNF142P52746 1687 aaPredicted RBP19.32■□□□□ 0.68
VPS54-201ENST00000272322 IARSP41252 1262 aaKnown RBP19.31■□□□□ 0.68
VPS54-201ENST00000272322 IQCB1Q15051 598 aa19.31■□□□□ 0.68
VPS54-201ENST00000272322 IFNL3Q8IZI9 196 aa19.31■□□□□ 0.68
VPS54-201ENST00000272322 EPB41L4AQ9HCS5 686 aaPredicted RBP19.31■□□□□ 0.68
VPS54-201ENST00000272322 SLC12A7Q9Y666 1083 aa19.31■□□□□ 0.68
VPS54-201ENST00000272322 CRKLP46109 303 aaKnown RBP19.31■□□□□ 0.68
VPS54-201ENST00000272322 TACC3Q9Y6A5 838 aa19.31■□□□□ 0.68
VPS54-201ENST00000272322 CCDC69A6NI79 296 aa19.31■□□□□ 0.68
VPS54-201ENST00000272322 SPDYE4A6NLX3 237 aa19.31■□□□□ 0.68
VPS54-201ENST00000272322 SLC3A2P08195 630 aaKnown RBP19.31■□□□□ 0.68
VPS54-201ENST00000272322 PUM3Q15397 648 aaKnown RBP19.31■□□□□ 0.68
VPS54-201ENST00000272322 ANO1Q5XXA6 986 aa19.31■□□□□ 0.68
VPS54-201ENST00000272322 CEP57L1Q8IYX8 460 aa19.31■□□□□ 0.68
VPS54-201ENST00000272322 STRBPQ96SI9 672 aaKnown RBP19.31■□□□□ 0.68
VPS54-201ENST00000272322 SALL1Q9NSC2 1324 aa19.31■□□□□ 0.68
VPS54-201ENST00000272322 TNNT1P13805 278 aa19.3■□□□□ 0.68
VPS54-201ENST00000272322 KIF23Q02241 960 aaPredicted RBP19.3■□□□□ 0.68
VPS54-201ENST00000272322 EVX2Q03828 476 aa19.3■□□□□ 0.68
VPS54-201ENST00000272322 TRIM28Q13263 835 aaKnown RBP19.3■□□□□ 0.68
VPS54-201ENST00000272322 ENGASEQ8NFI3 743 aa19.3■□□□□ 0.68
VPS54-201ENST00000272322 COL18A1P39060 1754 aa19.3■□□□□ 0.68
VPS54-201ENST00000272322 BTBD18B2RXH4 712 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms