RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 BTN1A1Q13410 526 aa15.18■□□□□ 0.02
CLN3-263ENST00000637871 AARDQ4LEZ3 155 aa15.18■□□□□ 0.02
CLN3-263ENST00000637871 SPRNQ5BIV9 151 aa15.18■□□□□ 0.02
CLN3-263ENST00000637871 AKR1C8PQ5T2L2 129 aa15.18■□□□□ 0.02
CLN3-263ENST00000637871 SLC25A24Q6NUK1 477 aa15.18■□□□□ 0.02
CLN3-263ENST00000637871 ZNF295-AS1Q8N0V1 137 aa15.18■□□□□ 0.02
CLN3-263ENST00000637871 TMEM217Q8N7C4 229 aa15.18■□□□□ 0.02
CLN3-263ENST00000637871 NEUROG1Q92886 237 aa15.18■□□□□ 0.02
CLN3-263ENST00000637871 ABCA4P78363 2273 aa15.18■□□□□ 0.02
CLN3-263ENST00000637871 IGHV3-43A0A0B4J1X8 118 aa15.17■□□□□ 0.02
CLN3-263ENST00000637871 S1PR2O95136 353 aa15.17■□□□□ 0.02
CLN3-263ENST00000637871 IGHV3-43DP0DP04 118 aa15.17■□□□□ 0.02
CLN3-263ENST00000637871 SERF2P84101 59 aa15.17■□□□□ 0.02
CLN3-263ENST00000637871 ZNF816Q0VGE8 651 aaPredicted RBP15.17■□□□□ 0.02
CLN3-263ENST00000637871 TMEM14EPQ6UXP3 125 aa15.17■□□□□ 0.02
CLN3-263ENST00000637871 TMEM182Q6ZP80 229 aaPredicted RBP15.17■□□□□ 0.02
CLN3-263ENST00000637871 DCTN5Q9BTE1 182 aa15.17■□□□□ 0.02
CLN3-263ENST00000637871 TACC2O95359 2948 aa15.17■□□□□ 0.02
CLN3-263ENST00000637871 RAMP3O60896 148 aa15.17■□□□□ 0.02
CLN3-263ENST00000637871 G6PCP35575 357 aa15.17■□□□□ 0.02
CLN3-263ENST00000637871 THBS3P49746 956 aa15.17■□□□□ 0.02
CLN3-263ENST00000637871 ERVK-16P61578 105 aa15.17■□□□□ 0.02
CLN3-263ENST00000637871 RPP30P78346 268 aaKnown RBP15.17■□□□□ 0.02
CLN3-263ENST00000637871 HOXA4Q00056 320 aaPredicted RBP15.17■□□□□ 0.02
CLN3-263ENST00000637871 EFNB3Q15768 340 aa15.17■□□□□ 0.02
CLN3-263ENST00000637871 C17orf58Q2M2W7 97 aa15.17■□□□□ 0.02
CLN3-263ENST00000637871 OR52E5Q8NH55 327 aa15.17■□□□□ 0.02
CLN3-263ENST00000637871 C17orf50Q8WW18 174 aa15.17■□□□□ 0.02
CLN3-263ENST00000637871 SH3BGRL3Q9H299 93 aa15.17■□□□□ 0.02
CLN3-263ENST00000637871 RBKSQ9H477 322 aa15.17■□□□□ 0.02
CLN3-263ENST00000637871 IDI2-AS1Q9NZ38 188 aa15.17■□□□□ 0.02
CLN3-263ENST00000637871 LINC00312Q9Y6C7 94 aa15.17■□□□□ 0.02
CLN3-263ENST00000637871 KIAA2026Q5HYC2 2103 aa15.16■□□□□ 0.02
CLN3-263ENST00000637871 ROS1P08922 2347 aa15.16■□□□□ 0.02
CLN3-263ENST00000637871 CYB5R3P00387 301 aaPredicted RBP15.16■□□□□ 0.02
CLN3-263ENST00000637871 BRWD1-AS2P59051 145 aa15.16■□□□□ 0.02
CLN3-263ENST00000637871 GUK1Q16774 197 aa15.16■□□□□ 0.02
CLN3-263ENST00000637871 FAM213BQ8TBF2 198 aa15.16■□□□□ 0.02
CLN3-263ENST00000637871 PINX1Q96BK5 328 aaKnown RBP15.16■□□□□ 0.02
CLN3-263ENST00000637871 R3HDM4Q96D70 268 aa15.16■□□□□ 0.02
CLN3-263ENST00000637871 RAB39BQ96DA2 213 aa15.16■□□□□ 0.02
CLN3-263ENST00000637871 S1PR3Q99500 378 aa15.16■□□□□ 0.02
CLN3-263ENST00000637871 ABHD14AQ9BUJ0 271 aa15.16■□□□□ 0.02
CLN3-263ENST00000637871 TMA7Q9Y2S6 64 aaKnown RBP15.16■□□□□ 0.02
CLN3-263ENST00000637871 TIMM9Q9Y5J7 89 aa15.16■□□□□ 0.02
CLN3-263ENST00000637871 TRAV1-1A0A0B4J248 108 aa15.15■□□□□ 0.02
CLN3-263ENST00000637871 LINC00473A8K010 186 aa15.15■□□□□ 0.02
CLN3-263ENST00000637871 PPIHO43447 177 aaKnown RBP15.15■□□□□ 0.02
CLN3-263ENST00000637871 NDUFA2O43678 99 aa15.15■□□□□ 0.02
CLN3-263ENST00000637871 IAPPP10997 89 aa15.15■□□□□ 0.02
CLN3-263ENST00000637871 APOBEC3AP31941 199 aaPredicted RBP15.15■□□□□ 0.02
CLN3-263ENST00000637871 ZNF273Q14593 569 aa15.15■□□□□ 0.02
CLN3-263ENST00000637871 IZUMO4Q1ZYL8 232 aa15.15■□□□□ 0.02
CLN3-263ENST00000637871 LRRC75BQ2VPJ9 315 aa15.15■□□□□ 0.02
CLN3-263ENST00000637871 BTNL3Q6UXE8 466 aa15.15■□□□□ 0.02
CLN3-263ENST00000637871 LILRB2Q8N423 598 aa15.15■□□□□ 0.02
CLN3-263ENST00000637871 ZNF525Q8N782 197 aa15.15■□□□□ 0.02
CLN3-263ENST00000637871 RBMXL1Q96E39 390 aaKnown RBP15.15■□□□□ 0.02
CLN3-263ENST00000637871 CLCC1Q96S66 551 aa15.15■□□□□ 0.02
CLN3-263ENST00000637871 AIFM2Q9BRQ8 373 aa15.15■□□□□ 0.02
CLN3-263ENST00000637871 IFI27L2Q9H2X8 130 aa15.15■□□□□ 0.02
CLN3-263ENST00000637871 GAL3ST2Q9H3Q3 398 aa15.15■□□□□ 0.02
CLN3-263ENST00000637871 SAP30LQ9HAJ7 183 aa15.15■□□□□ 0.02
CLN3-263ENST00000637871 ARID1AO14497 2285 aa15.15■□□□□ 0.02
CLN3-263ENST00000637871 PPIAL4EA0A075B759 164 aa15.14■□□□□ 0.01
CLN3-263ENST00000637871 MARCH11A6NNE9 402 aa15.14■□□□□ 0.01
CLN3-263ENST00000637871 B9A039 149 aa15.14■□□□□ 0.01
CLN3-263ENST00000637871 PPIAL4DF5H284 164 aa15.14■□□□□ 0.01
CLN3-263ENST00000637871 M0R1X1 148 aa15.14■□□□□ 0.01
CLN3-263ENST00000637871 SOX15O60248 233 aa15.14■□□□□ 0.01
CLN3-263ENST00000637871 NXPH3O95157 252 aa15.14■□□□□ 0.01
CLN3-263ENST00000637871 CD3EP07766 207 aa15.14■□□□□ 0.01
CLN3-263ENST00000637871 H2AFB1P0C5Y9 115 aa15.14■□□□□ 0.01
CLN3-263ENST00000637871 PPIAL4FP0DN26 164 aa15.14■□□□□ 0.01
CLN3-263ENST00000637871 NQO2P16083 231 aa15.14■□□□□ 0.01
CLN3-263ENST00000637871 PDLIM3Q53GG5 364 aaPredicted RBP15.14■□□□□ 0.01
CLN3-263ENST00000637871 SPANXN5Q5MJ07 72 aa15.14■□□□□ 0.01
CLN3-263ENST00000637871 NCR3LG1Q68D85 454 aa15.14■□□□□ 0.01
CLN3-263ENST00000637871 OR4S2Q8NH73 311 aa15.14■□□□□ 0.01
CLN3-263ENST00000637871 UNKLQ9H9P5 680 aaKnown RBP15.14■□□□□ 0.01
CLN3-263ENST00000637871 PPIAL4AQ9Y536 164 aa15.14■□□□□ 0.01
CLN3-263ENST00000637871 ASH1LQ9NR48 2969 aaKnown RBP15.14■□□□□ 0.01
CLN3-263ENST00000637871 SHISA9B4DS77 424 aa15.14■□□□□ 0.01
CLN3-263ENST00000637871 TMEM178BH3BS89 294 aa15.14■□□□□ 0.01
CLN3-263ENST00000637871 SFTA3P0C7M3 94 aa15.14■□□□□ 0.01
CLN3-263ENST00000637871 METTL15P1P0C7V9 234 aa15.14■□□□□ 0.01
CLN3-263ENST00000637871 SRSF3P84103 164 aaKnown RBP15.14■□□□□ 0.01
CLN3-263ENST00000637871 AKR1C1Q04828 323 aa15.14■□□□□ 0.01
CLN3-263ENST00000637871 PUSL1Q8N0Z8 303 aaKnown RBP15.14■□□□□ 0.01
CLN3-263ENST00000637871 DTD1Q8TEA8 209 aa15.14■□□□□ 0.01
CLN3-263ENST00000637871 CCL13Q99616 98 aa15.14■□□□□ 0.01
CLN3-263ENST00000637871 KIAA1456Q9P272 454 aa15.14■□□□□ 0.01
CLN3-263ENST00000637871 UNC79Q9P2D8 2635 aa15.13■□□□□ 0.01
CLN3-263ENST00000637871 FSTL3O95633 263 aa15.13■□□□□ 0.01
CLN3-263ENST00000637871 GYPAP02724 150 aa15.13■□□□□ 0.01
CLN3-263ENST00000637871 ADCYAP1P18509 176 aa15.13■□□□□ 0.01
CLN3-263ENST00000637871 SPCS3P61009 180 aa15.13■□□□□ 0.01
CLN3-263ENST00000637871 GNB2P62879 340 aa15.13■□□□□ 0.01
CLN3-263ENST00000637871 CCL8P80075 99 aa15.13■□□□□ 0.01
CLN3-263ENST00000637871 TMEM267Q0VDI3 215 aaPredicted RBP15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms