RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 OR13D1Q8NGV5 346 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 OR1S1Q8NH92 325 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 STOML3Q8TAV4 291 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 OSR1Q8TAX0 266 aaPredicted RBP8.64□□□□□ -1.03
CLN3-248ENST00000636355 FAM168AQ92567 244 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 ST6GALNAC6Q969X2 333 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 R3HDM4Q96D70 268 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 PHYHIPLQ96FC7 376 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 BPESC1Q9GZL8 116 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 HEXA-AS1Q9H8Q6 139 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 CACNG5Q9UF02 275 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 WSB1Q9Y6I7 421 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 DCHS2Q6V1P9 2916 aa8.63□□□□□ -1.03
CLN3-248ENST00000636355 VWC2LB2RUY7 222 aa8.63□□□□□ -1.03
CLN3-248ENST00000636355 WRBO00258 174 aa8.63□□□□□ -1.03
CLN3-248ENST00000636355 GPR137BO60478 399 aa8.63□□□□□ -1.03
CLN3-248ENST00000636355 FCGR3BO75015 233 aa8.63□□□□□ -1.03
CLN3-248ENST00000636355 NDUFS7O75251 213 aa8.63□□□□□ -1.03
CLN3-248ENST00000636355 SCGB1D2O95969 90 aa8.63□□□□□ -1.03
CLN3-248ENST00000636355 GAPDHP04406 335 aaKnown RBP8.63□□□□□ -1.03
CLN3-248ENST00000636355 PRTN3P24158 256 aa8.63□□□□□ -1.03
CLN3-248ENST00000636355 MC5RP33032 325 aa8.63□□□□□ -1.03
CLN3-248ENST00000636355 ATP5J2P56134 94 aa8.63□□□□□ -1.03
CLN3-248ENST00000636355 ZNF816Q0VGE8 651 aaPredicted RBP8.63□□□□□ -1.03
CLN3-248ENST00000636355 NDUFA5Q16718 116 aa8.63□□□□□ -1.03
CLN3-248ENST00000636355 MIDNQ504T8 468 aa8.63□□□□□ -1.03
CLN3-248ENST00000636355 PDLIM3Q53GG5 364 aaPredicted RBP8.63□□□□□ -1.03
CLN3-248ENST00000636355 TEX261Q6UWH6 196 aa8.63□□□□□ -1.03
CLN3-248ENST00000636355 H2BFWTQ7Z2G1 175 aa8.63□□□□□ -1.03
CLN3-248ENST00000636355 ABHD12Q8N2K0 398 aa8.63□□□□□ -1.03
CLN3-248ENST00000636355 OR11H6Q8NGC7 330 aa8.63□□□□□ -1.03
CLN3-248ENST00000636355 OR5AN1Q8NGI8 311 aa8.63□□□□□ -1.03
CLN3-248ENST00000636355 C10orf105Q8TEF2 133 aa8.63□□□□□ -1.03
CLN3-248ENST00000636355 LEAP2Q969E1 77 aa8.63□□□□□ -1.03
CLN3-248ENST00000636355 GPR146Q96CH1 333 aa8.63□□□□□ -1.03
CLN3-248ENST00000636355 CIB3Q96Q77 187 aaPredicted RBP8.63□□□□□ -1.03
CLN3-248ENST00000636355 ARPC5LQ9BPX5 153 aa8.63□□□□□ -1.03
CLN3-248ENST00000636355 C11orf1Q9H5F2 150 aa8.63□□□□□ -1.03
CLN3-248ENST00000636355 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.63□□□□□ -1.03
CLN3-248ENST00000636355 LYRM2Q9NU23 88 aaPredicted RBP8.63□□□□□ -1.03
CLN3-248ENST00000636355 OR5AC2Q9NZP5 309 aa8.63□□□□□ -1.03
CLN3-248ENST00000636355 HSPB7Q9UBY9 170 aa8.63□□□□□ -1.03
CLN3-248ENST00000636355 BOLA1Q9Y3E2 137 aa8.63□□□□□ -1.03
CLN3-248ENST00000636355 U3KQ87 197 aa8.63□□□□□ -1.03
CLN3-248ENST00000636355 ANKRD17O75179 2603 aaKnown RBP8.62□□□□□ -1.03
CLN3-248ENST00000636355 HECTD1Q9ULT8 2610 aa8.62□□□□□ -1.03
CLN3-248ENST00000636355 IGHV2-70DA0A0C4DH43 119 aa8.62□□□□□ -1.03
CLN3-248ENST00000636355 A0A0G2JRQ6 117 aa8.62□□□□□ -1.03
CLN3-248ENST00000636355 OOSP1A8MZH6 123 aa8.62□□□□□ -1.03
CLN3-248ENST00000636355 TSC22D2O75157 780 aa8.62□□□□□ -1.03
CLN3-248ENST00000636355 SLC25A16P16260 332 aa8.62□□□□□ -1.03
CLN3-248ENST00000636355 EPHA1P21709 976 aa8.62□□□□□ -1.03
CLN3-248ENST00000636355 CEACAM3P40198 252 aa8.62□□□□□ -1.03
CLN3-248ENST00000636355 AP2S1P53680 142 aaPredicted RBP8.62□□□□□ -1.03
CLN3-248ENST00000636355 LMO4P61968 165 aa8.62□□□□□ -1.03
CLN3-248ENST00000636355 PAX2Q02962 417 aa8.62□□□□□ -1.03
CLN3-248ENST00000636355 TNFRSF9Q07011 255 aa8.62□□□□□ -1.03
CLN3-248ENST00000636355 SP5Q6BEB4 398 aaPredicted RBP8.62□□□□□ -1.03
CLN3-248ENST00000636355 ZNF429Q86V71 674 aa8.62□□□□□ -1.03
CLN3-248ENST00000636355 TGIF2LXQ8IUE1 241 aa8.62□□□□□ -1.03
CLN3-248ENST00000636355 LRRC75A-AS1Q8N1F1 130 aa8.62□□□□□ -1.03
CLN3-248ENST00000636355 ZNF383Q8NA42 475 aa8.62□□□□□ -1.03
CLN3-248ENST00000636355 OR52E5Q8NH55 327 aa8.62□□□□□ -1.03
CLN3-248ENST00000636355 CLDND2Q8NHS1 167 aa8.62□□□□□ -1.03
CLN3-248ENST00000636355 SLC25A31Q9H0C2 315 aa8.62□□□□□ -1.03
CLN3-248ENST00000636355 SLC35D1Q9NTN3 355 aa8.62□□□□□ -1.03
CLN3-248ENST00000636355 BEX4Q9NWD9 120 aaPredicted RBP8.62□□□□□ -1.03
CLN3-248ENST00000636355 ONECUT1Q9UBC0 465 aa8.62□□□□□ -1.03
CLN3-248ENST00000636355 LSM5Q9Y4Y9 91 aaKnown RBP8.62□□□□□ -1.03
CLN3-248ENST00000636355 PTPN13Q12923 2485 aa8.62□□□□□ -1.03
CLN3-248ENST00000636355 ODF3BA8MYP8 253 aa8.61□□□□□ -1.03
CLN3-248ENST00000636355 H0YJW9 148 aa8.61□□□□□ -1.03
CLN3-248ENST00000636355 SYNGR2O43760 224 aa8.61□□□□□ -1.03
CLN3-248ENST00000636355 CRYZL1O95825 349 aa8.61□□□□□ -1.03
CLN3-248ENST00000636355 KRASP01116 189 aa8.61□□□□□ -1.03
CLN3-248ENST00000636355 CT45A6P0DMU7 189 aa8.61□□□□□ -1.03
CLN3-248ENST00000636355 CT45A5P0DMU8 189 aa8.61□□□□□ -1.03
CLN3-248ENST00000636355 CT45A7P0DMV0 189 aa8.61□□□□□ -1.03
CLN3-248ENST00000636355 HKR1P10072 659 aa8.61□□□□□ -1.03
CLN3-248ENST00000636355 RPL12P30050 165 aaKnown RBP8.61□□□□□ -1.03
CLN3-248ENST00000636355 G6PCP35575 357 aa8.61□□□□□ -1.03
CLN3-248ENST00000636355 RPL23AP62750 156 aaKnown RBP8.61□□□□□ -1.03
CLN3-248ENST00000636355 VAMP2P63027 116 aa8.61□□□□□ -1.03
CLN3-248ENST00000636355 TMEM177Q53S58 311 aa8.61□□□□□ -1.03
CLN3-248ENST00000636355 OR2B11Q5JQS5 317 aa8.61□□□□□ -1.03
CLN3-248ENST00000636355 MINOS1Q5TGZ0 78 aa8.61□□□□□ -1.03
CLN3-248ENST00000636355 ZNF295-AS1Q8N0V1 137 aa8.61□□□□□ -1.03
CLN3-248ENST00000636355 OR8H3Q8N146 312 aa8.61□□□□□ -1.03
CLN3-248ENST00000636355 STPG2Q8N412 459 aa8.61□□□□□ -1.03
CLN3-248ENST00000636355 OR2C3Q8N628 320 aa8.61□□□□□ -1.03
CLN3-248ENST00000636355 DMBX1Q8NFW5 382 aa8.61□□□□□ -1.03
CLN3-248ENST00000636355 OR4C13Q8NGP0 309 aa8.61□□□□□ -1.03
CLN3-248ENST00000636355 OR4A5Q8NH83 315 aa8.61□□□□□ -1.03
CLN3-248ENST00000636355 VSTM2AQ8TAG5 236 aa8.61□□□□□ -1.03
CLN3-248ENST00000636355 RHOVQ96L33 236 aa8.61□□□□□ -1.03
CLN3-248ENST00000636355 MRPL20Q9BYC9 149 aaKnown RBP8.61□□□□□ -1.03
CLN3-248ENST00000636355 BET1LQ9NYM9 111 aa8.61□□□□□ -1.03
CLN3-248ENST00000636355 UBQLN2Q9UHD9 624 aa8.61□□□□□ -1.03
CLN3-248ENST00000636355 FOXA2Q9Y261 457 aaPredicted RBP8.61□□□□□ -1.03
CLN3-248ENST00000636355 WASHC3Q9Y3C0 194 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms